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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN SPERMINE SYNTHASE IN COMPLEX WITH SPERMINE AND 5-METHYLTHIOADENOSINE
Keywords SPERMIDINE AMINOPROPYLTRANSFERASE, SPMSY, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, PHOSPHOPROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3C6M     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SPERMINE SYNTHASE  A 336 2676 0
2  Protein   SPERMINE SYNTHASE  B 342 2719 0
3  Protein   SPERMINE SYNTHASE  C 291 2325 0
4  Protein   SPERMINE SYNTHASE  D 278 2222 0
5  Ligand   SPERMINE SYNTHASE  A 2 0 34
6  Ligand   SPERMINE SYNTHASE  B 2 0 34
7  Ligand   SPERMINE SYNTHASE  C 2 0 34
8  Ligand   SPERMINE SYNTHASE  D 2 0 34
9 Water     300 0 300
total       1555 9942 436
Proteins
Unit 1 SER4 ARG5 HIS6 SER7 THR8 LEU9 ASP10 PHE11 MET12 LEU13 GLY14 ASP18 GLY19 GLU20 THR21 ILE22 LEU23 LYS24 GLY25 LEU26 GLN27 SER28 ILE29 PHE30 GLN31 GLU32 GLN33 GLY34 MET35 ALA36 GLU37 SER38 VAL39 HIS40 THR41 TRP42 GLN43 ASP44 HIS45 GLY46 TYR47 LEU48 ALA49 THR50 TYR51 THR52 ASN53 LYS54 ASN55 GLY56 SER57 PHE58 ALA59 ASN60 LEU61 ARG62 ILE63 TYR64 PRO65 HIS66 GLY67 LEU68 VAL69 LEU70 LEU71 ASP72 LEU73 GLN74 SER75 TYR76 ASP87 SER88 ILE89 LEU90 ASN91 LYS92 VAL93 GLU94 GLU95 ARG96 MET97 LYS98 GLU99 LEU100 SER101 VAL108 LYS109 ARG110 LEU111 PRO112 PRO113 ILE114 VAL115 ARG116 GLY117 GLY118 ALA119 ILE120 ASP121 ARG122 TYR123 TRP124 PRO125 THR126 ALA127 ASP128 GLY129 ARG130 LEU131 VAL132 GLU133 TYR134 ASP135 ILE136 ASP137 GLU138 VAL139 VAL140 TYR141 ASP142 GLU143 ASP144 SER145 PRO146 TYR147 GLN148 ASN149 ILE150 LYS151 ILE152 LEU153 HIS154 SER155 LYS156 GLN157 PHE158 GLY159 ASN160 ILE161 LEU162 ILE163 LEU164 SER165 GLY166 ASP167 VAL168 ASN169 LEU170 ALA171 GLU172 SER173 ASP174 LEU175 ALA176 TYR177 THR178 ARG179 ALA180 ILE181 MET182 GLY183 SER184 GLY185 LYS186 GLU187 ASP188 TYR189 THR190 GLY191 LYS192 ASP193 VAL194 LEU195 ILE196 LEU197 GLY198 GLY199 GLY200 ASP201 GLY202 GLY203 ILE204 LEU205 CYS206 GLU207 ILE208 VAL209 LYS210 LEU211 LYS212 PRO213 LYS214 MET215 VAL216 THR217 MET218 VAL219 GLU220 ILE221 ASP222 GLN223 MET224 VAL225 ILE226 ASP227 GLY228 CYS229 LYS230 LYS231 TYR232 MET233 ARG234 LYS235 THR236 CYS237 GLY238 ASP239 VAL240 LEU241 ASP242 ASN243 LEU244 LYS245 GLY246 ASP247 CYS248 TYR249 GLN250 VAL251 LEU252 ILE253 GLU254 ASP255 CYS256 ILE257 PRO258 VAL259 LEU260 LYS261 ARG262 TYR263 ALA264 LYS265 GLU266 GLY267 ARG268 GLU269 PHE270 ASP271 TYR272 VAL273 ILE274 ASN275 ASP276 LEU277 THR278 ALA279 VAL280 PRO281 ILE282 SER283 THR284 THR291 TRP292 GLU293 PHE294 LEU295 ARG296 LEU297 ILE298 LEU299 ASP300 LEU301 SER302 MET303 LYS304 VAL305 LEU306 LYS307 GLN308 ASP309 GLY310 LYS311 TYR312 PHE313 THR314 GLN315 GLY316 ASN317 CYS318 VAL319 ASN320 LEU321 THR322 GLU323 ALA324 LEU325 SER326 LEU327 TYR328 GLU329 GLU330 GLN331 LEU332 GLY333 ARG334 LEU335 TYR336 CYS337 PRO338 VAL339 GLU340 PHE341 SER342 LYS343 GLU344 ILE345 VAL346 CYS347 VAL348 PRO349 SER350 TYR351 LEU352 GLU353 LEU354 TRP355 VAL356 PHE357 TYR358 THR359 VAL360 TRP361 LYS362 LYS363 ALA364
Unit 2 SER4 ARG5 HIS6 SER7 THR8 LEU9 ASP10 PHE11 MET12 LEU13 GLY14 GLU20 THR21 ILE22 LEU23 LYS24 GLY25 LEU26 GLN27 SER28 ILE29 PHE30 GLN31 GLU32 GLN33 GLY34 MET35 ALA36 GLU37 SER38 VAL39 HIS40 THR41 TRP42 GLN43 ASP44 HIS45 GLY46 TYR47 LEU48 ALA49 THR50 TYR51 THR52 ASN53 LYS54 ASN55 GLY56 SER57 PHE58 ALA59 ASN60 LEU61 ARG62 ILE63 TYR64 PRO65 HIS66 GLY67 LEU68 VAL69 LEU70 LEU71 ASP72 LEU73 GLN74 SER75 GLY82 LYS83 GLU84 GLU85 ILE86 ASP87 SER88 ILE89 LEU90 ASN91 LYS92 VAL93 GLU94 GLU95 ARG96 MET97 LYS98 GLU99 LEU100 SER101 ARG107 VAL108 LYS109 ARG110 LEU111 PRO112 PRO113 ILE114 VAL115 ARG116 GLY117 GLY118 ALA119 ILE120 ASP121 ARG122 TYR123 TRP124 PRO125 THR126 ALA127 ASP128 GLY129 ARG130 LEU131 VAL132 GLU133 TYR134 ASP135 ILE136 ASP137 GLU138 VAL139 VAL140 TYR141 ASP142 GLU143 ASP144 SER145 PRO146 TYR147 GLN148 ASN149 ILE150 LYS151 ILE152 LEU153 HIS154 SER155 LYS156 GLN157 PHE158 GLY159 ASN160 ILE161 LEU162 ILE163 LEU164 SER165 GLY166 ASP167 VAL168 ASN169 LEU170 ALA171 GLU172 SER173 ASP174 LEU175 ALA176 TYR177 THR178 ARG179 ALA180 ILE181 MET182 GLY183 SER184 GLY185 LYS186 GLU187 ASP188 TYR189 THR190 GLY191 LYS192 ASP193 VAL194 LEU195 ILE196 LEU197 GLY198 GLY199 GLY200 ASP201 GLY202 GLY203 ILE204 LEU205 CYS206 GLU207 ILE208 VAL209 LYS210 LEU211 LYS212 PRO213 LYS214 MET215 VAL216 THR217 MET218 VAL219 GLU220 ILE221 ASP222 GLN223 MET224 VAL225 ILE226 ASP227 GLY228 CYS229 LYS230 LYS231 TYR232 MET233 ARG234 LYS235 THR236 CYS237 GLY238 ASP239 VAL240 LEU241 ASP242 ASN243 LEU244 LYS245 GLY246 ASP247 CYS248 TYR249 GLN250 VAL251 LEU252 ILE253 GLU254 ASP255 CYS256 ILE257 PRO258 VAL259 LEU260 LYS261 ARG262 TYR263 ALA264 LYS265 GLU266 GLY267 ARG268 GLU269 PHE270 ASP271 TYR272 VAL273 ILE274 ASN275 ASP276 LEU277 THR278 ALA279 VAL280 PRO281 ILE282 SER283 THR284 SER285 SER290 THR291 TRP292 GLU293 PHE294 LEU295 ARG296 LEU297 ILE298 LEU299 ASP300 LEU301 SER302 MET303 LYS304 VAL305 LEU306 LYS307 GLN308 ASP309 GLY310 LYS311 TYR312 PHE313 THR314 GLN315 GLY316 ASN317 CYS318 VAL319 ASN320 LEU321 THR322 GLU323 ALA324 LEU325 SER326 LEU327 TYR328 GLU329 GLU330 GLN331 LEU332 GLY333 ARG334 LEU335 TYR336 CYS337 PRO338 VAL339 GLU340 PHE341 SER342 LYS343 GLU344 ILE345 VAL346 CYS347 VAL348 PRO349 SER350 TYR351 LEU352 GLU353 LEU354 TRP355 VAL356 PHE357 TYR358 THR359 VAL360 TRP361 LYS362 LYS363 ALA364 LYS365
Unit 3 ARG5 HIS6 SER7 THR8 LEU9 ASP10 PHE11 MET12 LEU68 VAL69 LEU70 LEU71 ASP72 LEU73 GLN74 SER75 GLN81 GLY82 LYS83 GLU84 GLU85 ILE86 ASP87 SER88 ILE89 LEU90 ASN91 LYS92 VAL93 GLU94 GLU95 ARG96 MET97 LYS98 ARG107 VAL108 LYS109 ARG110 LEU111 PRO112 PRO113 ILE114 VAL115 ARG116 GLY117 GLY118 ALA119 ILE120 ASP121 ARG122 TYR123 TRP124 PRO125 THR126 ALA127 ASP128 GLY129 ARG130 LEU131 VAL132 GLU133 TYR134 ASP135 ILE136 ASP137 GLU138 VAL139 VAL140 TYR141 ASP142 GLU143 ASP144 SER145 PRO146 TYR147 GLN148 ASN149 ILE150 LYS151 ILE152 LEU153 HIS154 SER155 LYS156 GLN157 PHE158 GLY159 ASN160 ILE161 LEU162 ILE163 LEU164 SER165 GLY166 ASP167 VAL168 ASN169 LEU170 ALA171 GLU172 SER173 ASP174 LEU175 ALA176 TYR177 THR178 ARG179 ALA180 ILE181 MET182 GLY183 SER184 GLY185 LYS186 GLU187 ASP188 TYR189 THR190 GLY191 LYS192 ASP193 VAL194 LEU195 ILE196 LEU197 GLY198 GLY199 GLY200 ASP201 GLY202 GLY203 ILE204 LEU205 CYS206 GLU207 ILE208 VAL209 LYS210 LEU211 LYS212 PRO213 LYS214 MET215 VAL216 THR217 MET218 VAL219 GLU220 ILE221 ASP222 GLN223 MET224 VAL225 ILE226 ASP227 GLY228 CYS229 LYS230 LYS231 TYR232 MET233 ARG234 LYS235 THR236 CYS237 GLY238 ASP239 VAL240 LEU241 ASP242 ASN243 LEU244 LYS245 GLY246 ASP247 CYS248 TYR249 GLN250 VAL251 LEU252 ILE253 GLU254 ASP255 CYS256 ILE257 PRO258 VAL259 LEU260 LYS261 ARG262 TYR263 ALA264 LYS265 GLU266 GLY267 ARG268 GLU269 PHE270 ASP271 TYR272 VAL273 ILE274 ASN275 ASP276 LEU277 THR278 ALA279 VAL280 PRO281 ILE282 SER283 THR284 SER285 PRO286 SER290 THR291 TRP292 GLU293 PHE294 LEU295 ARG296 LEU297 ILE298 LEU299 ASP300 LEU301 SER302 MET303 LYS304 VAL305 LEU306 LYS307 GLN308 ASP309 GLY310 LYS311 TYR312 PHE313 THR314 GLN315 GLY316 ASN317 CYS318 VAL319 ASN320 LEU321 THR322 GLU323 ALA324 LEU325 SER326 LEU327 TYR328 GLU329 GLU330 GLN331 LEU332 GLY333 ARG334 LEU335 TYR336 CYS337 PRO338 VAL339 GLU340 PHE341 SER342 LYS343 GLU344 ILE345 VAL346 CYS347 VAL348 PRO349 SER350 TYR351 LEU352 GLU353 LEU354 TRP355 VAL356 PHE357 TYR358 THR359 VAL360 TRP361 LYS362 LYS363 ALA364 LYS365 PRO366
Unit 4 SER4 ARG5 HIS6 SER7 THR8 LEU9 ASP10 PHE11 MET12 LEU13 LEU61 ARG62 ILE63 TYR64 PRO65 HIS66 GLY67 LEU68 VAL69 LEU70 LEU71 ASP72 LEU73 GLN74 SER75 ARG107 VAL108 LYS109 ARG110 LEU111 PRO112 PRO113 ILE114 VAL115 ARG116 GLY117 GLY118 ALA119 ILE120 ASP121 ARG122 TYR123 TRP124 PRO125 THR126 ALA127 ASP128 GLY129 ARG130 LEU131 VAL132 GLU133 TYR134 ASP135 ILE136 ASP137 GLU138 VAL139 VAL140 TYR141 ASP142 GLU143 ASP144 SER145 PRO146 TYR147 GLN148 ASN149 ILE150 LYS151 ILE152 LEU153 HIS154 SER155 LYS156 GLN157 PHE158 GLY159 ASN160 ILE161 LEU162 ILE163 LEU164 SER165 GLY166 ASP167 VAL168 ASN169 LEU170 ALA171 GLU172 SER173 ASP174 LEU175 ALA176 TYR177 THR178 ARG179 ALA180 ILE181 MET182 GLY183 SER184 GLY185 LYS186 GLU187 ASP188 TYR189 THR190 GLY191 LYS192 ASP193 VAL194 LEU195 ILE196 LEU197 GLY198 GLY199 GLY200 ASP201 GLY202 GLY203 ILE204 LEU205 CYS206 GLU207 ILE208 VAL209 LYS210 LEU211 LYS212 PRO213 LYS214 MET215 VAL216 THR217 MET218 VAL219 GLU220 ILE221 ASP222 GLN223 MET224 VAL225 ILE226 ASP227 GLY228 CYS229 LYS230 LYS231 TYR232 MET233 ARG234 LYS235 THR236 CYS237 GLY238 ASP239 VAL240 LEU241 ASP242 ASN243 LEU244 LYS245 GLY246 ASP247 CYS248 TYR249 GLN250 VAL251 LEU252 ILE253 GLU254 ASP255 CYS256 ILE257 PRO258 VAL259 LEU260 LYS261 ARG262 TYR263 ALA264 LYS265 GLU266 GLY267 ARG268 GLU269 PHE270 ASP271 TYR272 VAL273 ILE274 ASN275 ASP276 LEU277 THR278 ALA279 VAL280 PRO281 ILE282 SER283 THR284 SER285 THR291 TRP292 GLU293 PHE294 LEU295 ARG296 LEU297 ILE298 LEU299 ASP300 LEU301 SER302 MET303 LYS304 VAL305 LEU306 LYS307 GLN308 ASP309 GLY310 LYS311 TYR312 PHE313 THR314 GLN315 GLY316 ASN317 CYS318 VAL319 ASN320 LEU321 THR322 GLU323 ALA324 LEU325 SER326 LEU327 TYR328 GLU329 GLU330 GLN331 LEU332 GLY333 ARG334 LEU335 TYR336 CYS337 PRO338 VAL339 GLU340 PHE341 SER342 LYS343 GLU344 ILE345 VAL346 CYS347 VAL348 PRO349 SER350 TYR351 LEU352 GLU353 LEU354 TRP355 VAL356 PHE357 TYR358 THR359 VAL360 TRP361 LYS362 LYS363 ALA364
Ligands
Unit 5 MTA401 SPM501
Unit 6 MTA401 SPM501
Unit 7 MTA401 SPM501
Unit 8 MTA401 SPM501
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany