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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN SPERMINE SYNTHASE IN COMPLEX WITH SPERMIDINE AND 5-METHYLTHIOADENOSINE
Keywords SPERMIDINE AMINOPROPYLTRANSFERASE, SPMSY, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, PHOSPHOPROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3C6K     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SPERMINE SYNTHASE  A 335 2681 0
2  Protein   SPERMINE SYNTHASE  B 345 2753 0
3  Protein   SPERMINE SYNTHASE  C 346 2758 0
4  Protein   SPERMINE SYNTHASE  D 348 2764 0
5  Ligand   SPERMINE SYNTHASE  A 2 0 30
6  Ligand   SPERMINE SYNTHASE  B 2 0 30
7  Ligand   SPERMINE SYNTHASE  C 2 0 30
8  Ligand   SPERMINE SYNTHASE  D 2 0 30
9 Water     1164 0 1164
total       2546 10956 1284
Proteins
Unit 1 GLY5 SER6 ARG7 HIS8 SER9 THR10 LEU11 ASP12 PHE13 MET14 LEU15 GLU22 THR23 ILE24 LEU25 LYS26 GLY27 LEU28 GLN29 SER30 ILE31 PHE32 GLN33 GLU34 GLN35 GLY36 MET37 ALA38 GLU39 SER40 VAL41 HIS42 THR43 TRP44 GLN45 ASP46 HIS47 GLY48 TYR49 LEU50 ALA51 THR52 TYR53 THR54 ASN55 LYS56 ASN57 GLY58 SER59 PHE60 ALA61 ASN62 LEU63 ARG64 ILE65 TYR66 PRO67 HIS68 GLY69 LEU70 VAL71 LEU72 LEU73 ASP74 LEU75 GLN76 SER77 TYR78 GLU86 GLU87 ILE88 ASP89 SER90 ILE91 LEU92 ASN93 LYS94 VAL95 GLU96 GLU97 ARG98 MET99 LYS100 GLU101 ARG109 VAL110 LYS111 ARG112 LEU113 PRO114 PRO115 ILE116 VAL117 ARG118 GLY119 GLY120 ALA121 ILE122 ASP123 ARG124 TYR125 TRP126 PRO127 THR128 ALA129 ASP130 GLY131 ARG132 LEU133 VAL134 GLU135 TYR136 ASP137 ILE138 ASP139 GLU140 VAL141 VAL142 TYR143 ASP144 GLU145 ASP146 SER147 PRO148 TYR149 GLN150 ASN151 ILE152 LYS153 ILE154 LEU155 HIS156 SER157 LYS158 GLN159 PHE160 GLY161 ASN162 ILE163 LEU164 ILE165 LEU166 SER167 GLY168 ASP169 VAL170 ASN171 LEU172 ALA173 GLU174 SER175 ASP176 LEU177 ALA178 TYR179 THR180 ARG181 ALA182 ILE183 MET184 GLY185 SER186 GLY187 LYS188 GLU189 ASP190 TYR191 THR192 GLY193 LYS194 ASP195 VAL196 LEU197 ILE198 LEU199 GLY200 GLY201 GLY202 ASP203 GLY204 GLY205 ILE206 LEU207 CYS208 GLU209 ILE210 VAL211 LYS212 LEU213 LYS214 PRO215 LYS216 MET217 VAL218 THR219 MET220 VAL221 GLU222 ILE223 ASP224 GLN225 MET226 VAL227 ILE228 ASP229 GLY230 CYS231 LYS232 LYS233 TYR234 MET235 ARG236 LYS237 VAL242 LEU243 ASP244 ASN245 LEU246 LYS247 GLY248 ASP249 CYS250 TYR251 GLN252 VAL253 LEU254 ILE255 GLU256 ASP257 CYS258 ILE259 PRO260 VAL261 LEU262 LYS263 ARG264 TYR265 ALA266 LYS267 GLU268 GLY269 ARG270 GLU271 PHE272 ASP273 TYR274 VAL275 ILE276 ASN277 ASP278 LEU279 THR280 ALA281 VAL282 PRO283 ILE284 SER285 THR286 SER287 SER292 THR293 TRP294 GLU295 PHE296 LEU297 ARG298 LEU299 ILE300 LEU301 ASP302 LEU303 SER304 MET305 LYS306 VAL307 LEU308 LYS309 GLN310 ASP311 GLY312 LYS313 TYR314 PHE315 THR316 GLN317 GLY318 ASN319 CYS320 VAL321 ASN322 LEU323 THR324 GLU325 ALA326 LEU327 SER328 LEU329 TYR330 GLU331 GLU332 GLN333 LEU334 GLY335 ARG336 LEU337 TYR338 CYS339 PRO340 VAL341 GLU342 PHE343 SER344 LYS345 GLU346 ILE347 VAL348 CYS349 VAL350 PRO351 SER352 TYR353 LEU354 GLU355 LEU356 TRP357 VAL358 PHE359 TYR360 THR361 VAL362 TRP363 LYS364 LYS365 ALA366 LYS367
Unit 2 SER6 ARG7 HIS8 SER9 THR10 LEU11 ASP12 PHE13 MET14 LEU15 GLY16 ASP20 GLY21 GLU22 THR23 ILE24 LEU25 LYS26 GLY27 LEU28 GLN29 SER30 ILE31 PHE32 GLN33 GLU34 GLN35 GLY36 MET37 ALA38 GLU39 SER40 VAL41 HIS42 THR43 TRP44 GLN45 ASP46 HIS47 GLY48 TYR49 LEU50 ALA51 THR52 TYR53 THR54 ASN55 LYS56 ASN57 GLY58 SER59 PHE60 ALA61 ASN62 LEU63 ARG64 ILE65 TYR66 PRO67 HIS68 GLY69 LEU70 VAL71 LEU72 LEU73 ASP74 LEU75 GLN76 SER77 TYR78 ASP79 GLN83 GLY84 LYS85 GLU86 GLU87 ILE88 ASP89 SER90 ILE91 LEU92 ASN93 LYS94 VAL95 GLU96 GLU97 ARG98 MET99 LYS100 GLU101 LEU102 SER103 ARG109 VAL110 LYS111 ARG112 LEU113 PRO114 PRO115 ILE116 VAL117 ARG118 GLY119 GLY120 ALA121 ILE122 ASP123 ARG124 TYR125 TRP126 PRO127 THR128 ALA129 ASP130 GLY131 ARG132 LEU133 VAL134 GLU135 TYR136 ASP137 ILE138 ASP139 GLU140 VAL141 VAL142 TYR143 ASP144 GLU145 ASP146 SER147 PRO148 TYR149 GLN150 ASN151 ILE152 LYS153 ILE154 LEU155 HIS156 SER157 LYS158 GLN159 PHE160 GLY161 ASN162 ILE163 LEU164 ILE165 LEU166 SER167 GLY168 ASP169 VAL170 ASN171 LEU172 ALA173 GLU174 SER175 ASP176 LEU177 ALA178 TYR179 THR180 ARG181 ALA182 ILE183 MET184 GLY185 SER186 GLY187 LYS188 GLU189 ASP190 TYR191 THR192 GLY193 LYS194 ASP195 VAL196 LEU197 ILE198 LEU199 GLY200 GLY201 GLY202 ASP203 GLY204 GLY205 ILE206 LEU207 CYS208 GLU209 ILE210 VAL211 LYS212 LEU213 LYS214 PRO215 LYS216 MET217 VAL218 THR219 MET220 VAL221 GLU222 ILE223 ASP224 GLN225 MET226 VAL227 ILE228 ASP229 GLY230 CYS231 LYS232 LYS233 TYR234 MET235 ARG236 LYS237 VAL242 LEU243 ASP244 ASN245 LEU246 LYS247 GLY248 ASP249 CYS250 TYR251 GLN252 VAL253 LEU254 ILE255 GLU256 ASP257 CYS258 ILE259 PRO260 VAL261 LEU262 LYS263 ARG264 TYR265 ALA266 LYS267 GLU268 GLY269 ARG270 GLU271 PHE272 ASP273 TYR274 VAL275 ILE276 ASN277 ASP278 LEU279 THR280 ALA281 VAL282 PRO283 ILE284 SER285 THR286 SER287 PRO288 SER292 THR293 TRP294 GLU295 PHE296 LEU297 ARG298 LEU299 ILE300 LEU301 ASP302 LEU303 SER304 MET305 LYS306 VAL307 LEU308 LYS309 GLN310 ASP311 GLY312 LYS313 TYR314 PHE315 THR316 GLN317 GLY318 ASN319 CYS320 VAL321 ASN322 LEU323 THR324 GLU325 ALA326 LEU327 SER328 LEU329 TYR330 GLU331 GLU332 GLN333 LEU334 GLY335 ARG336 LEU337 TYR338 CYS339 PRO340 VAL341 GLU342 PHE343 SER344 LYS345 GLU346 ILE347 VAL348 CYS349 VAL350 PRO351 SER352 TYR353 LEU354 GLU355 LEU356 TRP357 VAL358 PHE359 TYR360 THR361 VAL362 TRP363 LYS364 LYS365 ALA366 LYS367 PRO368
Unit 3 GLY5 SER6 ARG7 HIS8 SER9 THR10 LEU11 ASP12 PHE13 MET14 LEU15 ASP20 GLY21 GLU22 THR23 ILE24 LEU25 LYS26 GLY27 LEU28 GLN29 SER30 ILE31 PHE32 GLN33 GLU34 GLN35 GLY36 MET37 ALA38 GLU39 SER40 VAL41 HIS42 THR43 TRP44 GLN45 ASP46 HIS47 GLY48 TYR49 LEU50 ALA51 THR52 TYR53 THR54 ASN55 LYS56 ASN57 GLY58 SER59 PHE60 ALA61 ASN62 LEU63 ARG64 ILE65 TYR66 PRO67 HIS68 GLY69 LEU70 VAL71 LEU72 LEU73 ASP74 LEU75 GLN76 SER77 TYR78 ASP79 GLN83 GLY84 LYS85 GLU86 GLU87 ILE88 ASP89 SER90 ILE91 LEU92 ASN93 LYS94 VAL95 GLU96 GLU97 ARG98 MET99 LYS100 GLU101 LEU102 SER103 GLN104 GLY108 ARG109 VAL110 LYS111 ARG112 LEU113 PRO114 PRO115 ILE116 VAL117 ARG118 GLY119 GLY120 ALA121 ILE122 ASP123 ARG124 TYR125 TRP126 PRO127 THR128 ALA129 ASP130 GLY131 ARG132 LEU133 VAL134 GLU135 TYR136 ASP137 ILE138 ASP139 GLU140 VAL141 VAL142 TYR143 ASP144 GLU145 ASP146 SER147 PRO148 TYR149 GLN150 ASN151 ILE152 LYS153 ILE154 LEU155 HIS156 SER157 LYS158 GLN159 PHE160 GLY161 ASN162 ILE163 LEU164 ILE165 LEU166 SER167 GLY168 ASP169 VAL170 ASN171 LEU172 ALA173 GLU174 SER175 ASP176 LEU177 ALA178 TYR179 THR180 ARG181 ALA182 ILE183 MET184 GLY185 SER186 GLY187 LYS188 GLU189 ASP190 TYR191 THR192 GLY193 LYS194 ASP195 VAL196 LEU197 ILE198 LEU199 GLY200 GLY201 GLY202 ASP203 GLY204 GLY205 ILE206 LEU207 CYS208 GLU209 ILE210 VAL211 LYS212 LEU213 LYS214 PRO215 LYS216 MET217 VAL218 THR219 MET220 VAL221 GLU222 ILE223 ASP224 GLN225 MET226 VAL227 ILE228 ASP229 GLY230 CYS231 LYS232 LYS233 TYR234 MET235 ARG236 LYS237 LEU243 ASP244 ASN245 LEU246 LYS247 GLY248 ASP249 CYS250 TYR251 GLN252 VAL253 LEU254 ILE255 GLU256 ASP257 CYS258 ILE259 PRO260 VAL261 LEU262 LYS263 ARG264 TYR265 ALA266 LYS267 GLU268 GLY269 ARG270 GLU271 PHE272 ASP273 TYR274 VAL275 ILE276 ASN277 ASP278 LEU279 THR280 ALA281 VAL282 PRO283 ILE284 SER285 THR286 SER287 PRO288 SER292 THR293 TRP294 GLU295 PHE296 LEU297 ARG298 LEU299 ILE300 LEU301 ASP302 LEU303 SER304 MET305 LYS306 VAL307 LEU308 LYS309 GLN310 ASP311 GLY312 LYS313 TYR314 PHE315 THR316 GLN317 GLY318 ASN319 CYS320 VAL321 ASN322 LEU323 THR324 GLU325 ALA326 LEU327 SER328 LEU329 TYR330 GLU331 GLU332 GLN333 LEU334 GLY335 ARG336 LEU337 TYR338 CYS339 PRO340 VAL341 GLU342 PHE343 SER344 LYS345 GLU346 ILE347 VAL348 CYS349 VAL350 PRO351 SER352 TYR353 LEU354 GLU355 LEU356 TRP357 VAL358 PHE359 TYR360 THR361 VAL362 TRP363 LYS364 LYS365 ALA366 LYS367 PRO368
Unit 4 GLY5 SER6 ARG7 HIS8 SER9 THR10 LEU11 ASP12 PHE13 MET14 LEU15 ASP20 GLY21 GLU22 THR23 ILE24 LEU25 LYS26 GLY27 LEU28 GLN29 SER30 ILE31 PHE32 GLN33 GLU34 GLN35 GLY36 MET37 ALA38 GLU39 SER40 VAL41 HIS42 THR43 TRP44 GLN45 ASP46 HIS47 GLY48 TYR49 LEU50 ALA51 THR52 TYR53 THR54 ASN55 LYS56 ASN57 GLY58 SER59 PHE60 ALA61 ASN62 LEU63 ARG64 ILE65 TYR66 PRO67 HIS68 GLY69 LEU70 VAL71 LEU72 LEU73 ASP74 LEU75 GLN76 SER77 TYR78 ASP79 GLY80 ASP81 ALA82 GLN83 GLY84 LYS85 GLU86 GLU87 ILE88 ASP89 SER90 ILE91 LEU92 ASN93 LYS94 VAL95 GLU96 GLU97 ARG98 MET99 LYS100 GLU101 LEU102 GLY108 ARG109 VAL110 LYS111 ARG112 LEU113 PRO114 PRO115 ILE116 VAL117 ARG118 GLY119 GLY120 ALA121 ILE122 ASP123 ARG124 TYR125 TRP126 PRO127 THR128 ALA129 ASP130 GLY131 ARG132 LEU133 VAL134 GLU135 TYR136 ASP137 ILE138 ASP139 GLU140 VAL141 VAL142 TYR143 ASP144 GLU145 ASP146 SER147 PRO148 TYR149 GLN150 ASN151 ILE152 LYS153 ILE154 LEU155 HIS156 SER157 LYS158 GLN159 PHE160 GLY161 ASN162 ILE163 LEU164 ILE165 LEU166 SER167 GLY168 ASP169 VAL170 ASN171 LEU172 ALA173 GLU174 SER175 ASP176 LEU177 ALA178 TYR179 THR180 ARG181 ALA182 ILE183 MET184 GLY185 SER186 GLY187 LYS188 GLU189 ASP190 TYR191 THR192 GLY193 LYS194 ASP195 VAL196 LEU197 ILE198 LEU199 GLY200 GLY201 GLY202 ASP203 GLY204 GLY205 ILE206 LEU207 CYS208 GLU209 ILE210 VAL211 LYS212 LEU213 LYS214 PRO215 LYS216 MET217 VAL218 THR219 MET220 VAL221 GLU222 ILE223 ASP224 GLN225 MET226 VAL227 ILE228 ASP229 GLY230 CYS231 LYS232 LYS233 TYR234 MET235 ARG236 LYS237 ASP241 VAL242 LEU243 ASP244 ASN245 LEU246 LYS247 GLY248 ASP249 CYS250 TYR251 GLN252 VAL253 LEU254 ILE255 GLU256 ASP257 CYS258 ILE259 PRO260 VAL261 LEU262 LYS263 ARG264 TYR265 ALA266 LYS267 GLU268 GLY269 ARG270 GLU271 PHE272 ASP273 TYR274 VAL275 ILE276 ASN277 ASP278 LEU279 THR280 ALA281 VAL282 PRO283 ILE284 SER285 THR286 SER287 PRO288 SER292 THR293 TRP294 GLU295 PHE296 LEU297 ARG298 LEU299 ILE300 LEU301 ASP302 LEU303 SER304 MET305 LYS306 VAL307 LEU308 LYS309 GLN310 ASP311 GLY312 LYS313 TYR314 PHE315 THR316 GLN317 GLY318 ASN319 CYS320 VAL321 ASN322 LEU323 THR324 GLU325 ALA326 LEU327 SER328 LEU329 TYR330 GLU331 GLU332 GLN333 LEU334 GLY335 ARG336 LEU337 TYR338 CYS339 PRO340 VAL341 GLU342 PHE343 SER344 LYS345 GLU346 ILE347 VAL348 CYS349 VAL350 PRO351 SER352 TYR353 LEU354 GLU355 LEU356 TRP357 VAL358 PHE359 TYR360 THR361 VAL362 TRP363 LYS364 LYS365 ALA366 LYS367
Ligands
Unit 5 MTA401 SPD501
Unit 6 MTA401 SPD501
Unit 7 MTA401 SPD501
Unit 8 MTA401 SPD501
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany