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Sequence, Chains, Asymmetric and Biological Units

Title THE PSEUDO-ATOMIC STRUCTURE OF DENGUE IMMATURE VIRUS
Keywords ICOSAHEDRAL VIRION, HELICASE, HYDROLASE, NUCLEOTIDE-BINDING, REPLICATION, TRANSMEMBRANE, ATP-BINDING, CAPSID PROTEIN, CL PAIR OF BASIC RESIDUES, ENDOPLASMIC RETICULUM, ENVELOPE PRO GLYCOPROTEIN, METAL-BINDING, MULTIFUNCTIONAL ENZYME, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, PROTEASE, RIBONUCLEOPROTEIN, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE SECRETED, SERINE PROTEASE, TRANSCRIPTION, TRANSCRIPTION REG TRANSFERASE, VIRAL NUCLEOPROTEIN, ICOSAHEDRAL VIRUS, VIRUS
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3C6D     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   POLYPROTEIN  A 390 390 0
2  Protein   POLYPROTEIN  B 390 390 0
3  Protein   POLYPROTEIN  C 390 390 0
4  Protein   PRM  D 81 81 0
5  Protein   PRM  E 81 81 0
6  Protein   PRM  F 81 81 0
total       1413 1413 0
Proteins
Unit 1 MET1 ARG2 CYS3 ILE4 GLY5 ILE6 SER7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 VAL15 SER16 SER19 TRP20 VAL21 ASP22 ILE23 VAL24 LEU25 GLU26 HIS27 GLY28 SER29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 PHE43 GLU44 LEU45 ILE46 LYS47 THR48 GLU49 ALA50 LYS51 PRO53 ALA54 THR55 LEU56 ARG57 LYS58 TYR59 CYS60 ILE61 GLU62 ALA63 LYS64 LEU65 THR66 ASN67 THR68 THR69 THR70 GLU71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 PRO80 SER81 LEU82 ASN83 GLU84 GLU85 GLN86 ASP87 LYS88 ARG89 PHE90 VAL91 CYS92 LYS93 HIS94 SER95 MET96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 GLY112 ILE113 VAL114 THR115 CYS116 ALA117 MET118 PHE119 ARG120 CYS121 LYS122 LYS123 ASN124 MET125 GLU126 GLY127 LYS128 VAL129 VAL130 GLN131 PRO132 GLU133 ASN134 LEU135 GLU136 TYR137 THR138 VAL139 VAL140 ILE141 THR142 PRO143 HIS144 SER145 GLY146 GLU147 GLU148 HIS149 ALA150 VAL151 GLY152 ASN153 ASP154 THR155 GLY156 LYS157 HIS158 GLY159 LYS160 GLU161 VAL162 LYS163 ILE164 THR165 PRO166 GLN167 SER168 SER169 ILE170 THR171 GLU172 ALA173 GLU174 LEU175 THR176 GLY177 TYR178 GLY179 THR180 VAL181 THR182 MET183 GLU184 CYS185 SER186 PRO187 ARG188 THR189 GLY190 LEU191 ASP192 GLU195 MET196 VAL197 LEU198 LEU199 GLN200 MET201 GLU202 ASN203 LYS204 ALA205 TRP206 LEU207 VAL208 HIS209 ARG210 GLN211 TRP212 PHE213 LEU214 ASP215 LEU216 PRO217 LEU218 PRO219 TRP220 LEU221 PRO222 GLY223 ALA224 ASP225 THR226 GLN227 GLY228 SER229 ASN230 TRP231 ILE232 GLN233 LYS234 GLU235 THR236 LEU237 VAL238 THR239 PHE240 LYS241 ASN242 PRO243 HIS244 ALA245 LYS246 LYS247 GLN248 ASP249 VAL250 VAL251 VAL252 LEU253 GLY254 SER255 GLN256 GLU257 GLY258 ALA259 MET260 HIS261 THR262 ALA263 LEU264 THR265 GLY266 ALA267 THR268 GLU269 ILE270 GLN271 MET272 SER273 SER274 GLY275 ASN276 LEU277 LEU278 PHE279 THR280 GLY281 HIS282 LEU283 LYS284 CYS285 ARG286 LEU287 ARG288 MET289 ASP290 LYS291 LEU292 GLN293 LEU294 LYS295 GLY296 MET297 SER298 TYR299 SER300 MET301 CYS302 THR303 GLY304 LYS305 PHE306 LYS307 VAL308 VAL309 LYS310 GLU311 ILE312 ALA313 GLU314 THR315 GLN316 HIS317 GLY318 THR319 ILE320 VAL321 ILE322 ARG323 VAL324 GLN325 TYR326 GLU327 GLY328 ASP329 GLY330 SER331 PRO332 CYS333 LYS334 ILE335 PRO336 PHE337 GLU338 ILE339 MET340 ASP341 LEU342 GLU343 LYS344 ARG345 HIS346 VAL347 LEU348 GLY349 ARG350 LEU351 ILE352 THR353 VAL354 ASN355 PRO356 ILE357 VAL358 THR359 GLU360 LYS361 ASP362 SER363 PRO364 VAL365 ASN366 ILE367 GLU368 ALA369 GLU370 PRO371 PRO372 PHE373 GLY374 ASP375 SER376 TYR377 ILE378 ILE379 ILE380 GLY381 VAL382 GLU383 PRO384 GLY385 GLN386 LEU387 LYS388 LEU389 ASP390 TRP391 PHE392 LYS393 LYS394 GLY395
Unit 2 MET1 ARG2 CYS3 ILE4 GLY5 ILE6 SER7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 VAL15 SER16 SER19 TRP20 VAL21 ASP22 ILE23 VAL24 LEU25 GLU26 HIS27 GLY28 SER29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 PHE43 GLU44 LEU45 ILE46 LYS47 THR48 GLU49 ALA50 LYS51 PRO53 ALA54 THR55 LEU56 ARG57 LYS58 TYR59 CYS60 ILE61 GLU62 ALA63 LYS64 LEU65 THR66 ASN67 THR68 THR69 THR70 GLU71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 PRO80 SER81 LEU82 ASN83 GLU84 GLU85 GLN86 ASP87 LYS88 ARG89 PHE90 VAL91 CYS92 LYS93 HIS94 SER95 MET96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 GLY112 ILE113 VAL114 THR115 CYS116 ALA117 MET118 PHE119 ARG120 CYS121 LYS122 LYS123 ASN124 MET125 GLU126 GLY127 LYS128 VAL129 VAL130 GLN131 PRO132 GLU133 ASN134 LEU135 GLU136 TYR137 THR138 VAL139 VAL140 ILE141 THR142 PRO143 HIS144 SER145 GLY146 GLU147 GLU148 HIS149 ALA150 VAL151 GLY152 ASN153 ASP154 THR155 GLY156 LYS157 HIS158 GLY159 LYS160 GLU161 VAL162 LYS163 ILE164 THR165 PRO166 GLN167 SER168 SER169 ILE170 THR171 GLU172 ALA173 GLU174 LEU175 THR176 GLY177 TYR178 GLY179 THR180 VAL181 THR182 MET183 GLU184 CYS185 SER186 PRO187 ARG188 THR189 GLY190 LEU191 ASP192 GLU195 MET196 VAL197 LEU198 LEU199 GLN200 MET201 GLU202 ASN203 LYS204 ALA205 TRP206 LEU207 VAL208 HIS209 ARG210 GLN211 TRP212 PHE213 LEU214 ASP215 LEU216 PRO217 LEU218 PRO219 TRP220 LEU221 PRO222 GLY223 ALA224 ASP225 THR226 GLN227 GLY228 SER229 ASN230 TRP231 ILE232 GLN233 LYS234 GLU235 THR236 LEU237 VAL238 THR239 PHE240 LYS241 ASN242 PRO243 HIS244 ALA245 LYS246 LYS247 GLN248 ASP249 VAL250 VAL251 VAL252 LEU253 GLY254 SER255 GLN256 GLU257 GLY258 ALA259 MET260 HIS261 THR262 ALA263 LEU264 THR265 GLY266 ALA267 THR268 GLU269 ILE270 GLN271 MET272 SER273 SER274 GLY275 ASN276 LEU277 LEU278 PHE279 THR280 GLY281 HIS282 LEU283 LYS284 CYS285 ARG286 LEU287 ARG288 MET289 ASP290 LYS291 LEU292 GLN293 LEU294 LYS295 GLY296 MET297 SER298 TYR299 SER300 MET301 CYS302 THR303 GLY304 LYS305 PHE306 LYS307 VAL308 VAL309 LYS310 GLU311 ILE312 ALA313 GLU314 THR315 GLN316 HIS317 GLY318 THR319 ILE320 VAL321 ILE322 ARG323 VAL324 GLN325 TYR326 GLU327 GLY328 ASP329 GLY330 SER331 PRO332 CYS333 LYS334 ILE335 PRO336 PHE337 GLU338 ILE339 MET340 ASP341 LEU342 GLU343 LYS344 ARG345 HIS346 VAL347 LEU348 GLY349 ARG350 LEU351 ILE352 THR353 VAL354 ASN355 PRO356 ILE357 VAL358 THR359 GLU360 LYS361 ASP362 SER363 PRO364 VAL365 ASN366 ILE367 GLU368 ALA369 GLU370 PRO371 PRO372 PHE373 GLY374 ASP375 SER376 TYR377 ILE378 ILE379 ILE380 GLY381 VAL382 GLU383 PRO384 GLY385 GLN386 LEU387 LYS388 LEU389 ASP390 TRP391 PHE392 LYS393 LYS394 GLY395
Unit 3 MET1 ARG2 CYS3 ILE4 GLY5 ILE6 SER7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 VAL15 SER16 SER19 TRP20 VAL21 ASP22 ILE23 VAL24 LEU25 GLU26 HIS27 GLY28 SER29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 PHE43 GLU44 LEU45 ILE46 LYS47 THR48 GLU49 ALA50 LYS51 PRO53 ALA54 THR55 LEU56 ARG57 LYS58 TYR59 CYS60 ILE61 GLU62 ALA63 LYS64 LEU65 THR66 ASN67 THR68 THR69 THR70 GLU71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 PRO80 SER81 LEU82 ASN83 GLU84 GLU85 GLN86 ASP87 LYS88 ARG89 PHE90 VAL91 CYS92 LYS93 HIS94 SER95 MET96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 GLY112 ILE113 VAL114 THR115 CYS116 ALA117 MET118 PHE119 ARG120 CYS121 LYS122 LYS123 ASN124 MET125 GLU126 GLY127 LYS128 VAL129 VAL130 GLN131 PRO132 GLU133 ASN134 LEU135 GLU136 TYR137 THR138 VAL139 VAL140 ILE141 THR142 PRO143 HIS144 SER145 GLY146 GLU147 GLU148 HIS149 ALA150 VAL151 GLY152 ASN153 ASP154 THR155 GLY156 LYS157 HIS158 GLY159 LYS160 GLU161 VAL162 LYS163 ILE164 THR165 PRO166 GLN167 SER168 SER169 ILE170 THR171 GLU172 ALA173 GLU174 LEU175 THR176 GLY177 TYR178 GLY179 THR180 VAL181 THR182 MET183 GLU184 CYS185 SER186 PRO187 ARG188 THR189 GLY190 LEU191 ASP192 GLU195 MET196 VAL197 LEU198 LEU199 GLN200 MET201 GLU202 ASN203 LYS204 ALA205 TRP206 LEU207 VAL208 HIS209 ARG210 GLN211 TRP212 PHE213 LEU214 ASP215 LEU216 PRO217 LEU218 PRO219 TRP220 LEU221 PRO222 GLY223 ALA224 ASP225 THR226 GLN227 GLY228 SER229 ASN230 TRP231 ILE232 GLN233 LYS234 GLU235 THR236 LEU237 VAL238 THR239 PHE240 LYS241 ASN242 PRO243 HIS244 ALA245 LYS246 LYS247 GLN248 ASP249 VAL250 VAL251 VAL252 LEU253 GLY254 SER255 GLN256 GLU257 GLY258 ALA259 MET260 HIS261 THR262 ALA263 LEU264 THR265 GLY266 ALA267 THR268 GLU269 ILE270 GLN271 MET272 SER273 SER274 GLY275 ASN276 LEU277 LEU278 PHE279 THR280 GLY281 HIS282 LEU283 LYS284 CYS285 ARG286 LEU287 ARG288 MET289 ASP290 LYS291 LEU292 GLN293 LEU294 LYS295 GLY296 MET297 SER298 TYR299 SER300 MET301 CYS302 THR303 GLY304 LYS305 PHE306 LYS307 VAL308 VAL309 LYS310 GLU311 ILE312 ALA313 GLU314 THR315 GLN316 HIS317 GLY318 THR319 ILE320 VAL321 ILE322 ARG323 VAL324 GLN325 TYR326 GLU327 GLY328 ASP329 GLY330 SER331 PRO332 CYS333 LYS334 ILE335 PRO336 PHE337 GLU338 ILE339 MET340 ASP341 LEU342 GLU343 LYS344 ARG345 HIS346 VAL347 LEU348 GLY349 ARG350 LEU351 ILE352 THR353 VAL354 ASN355 PRO356 ILE357 VAL358 THR359 GLU360 LYS361 ASP362 SER363 PRO364 VAL365 ASN366 ILE367 GLU368 ALA369 GLU370 PRO371 PRO372 PHE373 GLY374 ASP375 SER376 TYR377 ILE378 ILE379 ILE380 GLY381 VAL382 GLU383 PRO384 GLY385 GLN386 LEU387 LYS388 LEU389 ASP390 TRP391 PHE392 LYS393 LYS394 GLY395
Unit 4 PHE1 HIS2 LEU3 THR4 THR5 ARG6 ASN7 GLY8 GLU9 PRO10 HIS11 MET12 ILE13 VAL14 SER15 ARG16 GLN17 GLU18 LYS19 GLY20 LYS21 SER22 LEU23 LEU24 PHE25 LYS26 THR27 GLU28 ASP29 GLY30 VAL31 ASN32 MET33 CYS34 THR35 LEU36 MET37 ALA38 MET39 ASP40 LEU41 GLY42 GLU43 LEU44 CYS45 GLU46 ASP47 THR48 ILE49 THR50 TYR51 LYS52 CYS53 PRO54 LEU55 LEU56 ARG57 GLN58 ASN59 GLU60 PRO61 GLU62 ASP63 ILE64 ASP65 CYS66 TRP67 CYS68 ASN69 SER70 THR71 SER72 THR73 TRP74 VAL75 THR76 TYR77 GLY78 THR79 CYS80 THR81
Unit 5 PHE1 HIS2 LEU3 THR4 THR5 ARG6 ASN7 GLY8 GLU9 PRO10 HIS11 MET12 ILE13 VAL14 SER15 ARG16 GLN17 GLU18 LYS19 GLY20 LYS21 SER22 LEU23 LEU24 PHE25 LYS26 THR27 GLU28 ASP29 GLY30 VAL31 ASN32 MET33 CYS34 THR35 LEU36 MET37 ALA38 MET39 ASP40 LEU41 GLY42 GLU43 LEU44 CYS45 GLU46 ASP47 THR48 ILE49 THR50 TYR51 LYS52 CYS53 PRO54 LEU55 LEU56 ARG57 GLN58 ASN59 GLU60 PRO61 GLU62 ASP63 ILE64 ASP65 CYS66 TRP67 CYS68 ASN69 SER70 THR71 SER72 THR73 TRP74 VAL75 THR76 TYR77 GLY78 THR79 CYS80 THR81
Unit 6 PHE1 HIS2 LEU3 THR4 THR5 ARG6 ASN7 GLY8 GLU9 PRO10 HIS11 MET12 ILE13 VAL14 SER15 ARG16 GLN17 GLU18 LYS19 GLY20 LYS21 SER22 LEU23 LEU24 PHE25 LYS26 THR27 GLU28 ASP29 GLY30 VAL31 ASN32 MET33 CYS34 THR35 LEU36 MET37 ALA38 MET39 ASP40 LEU41 GLY42 GLU43 LEU44 CYS45 GLU46 ASP47 THR48 ILE49 THR50 TYR51 LYS52 CYS53 PRO54 LEU55 LEU56 ARG57 GLN58 ASN59 GLU60 PRO61 GLU62 ASP63 ILE64 ASP65 CYS66 TRP67 CYS68 ASN69 SER70 THR71 SER72 THR73 TRP74 VAL75 THR76 TYR77 GLY78 THR79 CYS80 THR81
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany