3C25 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF NOTI RESTRICTION ENDONUCLEASE BOUND TO DNA
• Keywords: PROTEIN-DNA COMPLEX, RESTRICTION ENZYME FOLD, PD-(D/E)-XK, RESTRICTION ENDONUCLEASE, RARE-CUTTING, FE-CYS4 MOTIF, IRON PROTEIN, HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3C25	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Other macromolecule	DNA (5'- D(*DCP*DGP*DGP*DAP*DGP*DGP*DCP*DGP*DCP*DGP*DGP*DCP*DCP*DGP* P*DCP*DGP*DCP*DCP*DG)-3')	C	22	450	0
2	Other macromolecule	DNA (5'- D(*DCP*DGP*DGP*DCP*DGP*DGP*DCP*DGP*DCP*DGP*DGP*DCP*DCP*DGP* P*DCP*DTP*DCP*DCP*DG)-3')	D	22	446	0
3	Protein	NOTI RESTRICTION ENDONUCLEASE	A	354	2720	0
4	Protein	NOTI RESTRICTION ENDONUCLEASE	B	353	2718	0
5	Ligand	NOTI RESTRICTION ENDONUCLEASE	A	3	0	3
6	Ligand	NOTI RESTRICTION ENDONUCLEASE	B	3	0	3
7	Water			168	0	168
total				925	6334	174

Proteins

Unit 3

ALA 12 ASN 13 PHE 14 ILE 15 ALA 16 GLU 17 PHE 18 PHE 19 GLY 20 HIS 21 ARG 22 VAL 23 TYR 24 PRO 25 GLU 26 VAL 27 VAL 28 SER 29 THR 30 GLU 31 ALA 32 ALA 33 ARG 34 ASN 35 ASP 36 GLN 37 ALA 38 THR 39 GLY 40 THR 41 CYS 42 PRO 43 PHE 44 LEU 45 THR 46 ALA 47 ALA 48 LYS 49 LEU 50 VAL 51 GLU 52 THR 53 SER 54 CYS 55 VAL 56 LYS 57 ALA 58 GLU 59 THR 60 SER 61 ARG 62 GLY 63 VAL 64 CYS 65 VAL 66 VAL 67 ASN 68 THR 69 ALA 70 VAL 71 ASP 72 ASN 73 GLU 74 ARG 75 TYR 76 ASP 77 TRP 78 LEU 79 VAL 80 CYS 81 PRO 82 ASN 83 ARG 84 ALA 85 LEU 86 ASP 87 PRO 88 LEU 89 PHE 90 MET 91 SER 92 ALA 93 ALA 94 SER 95 ARG 96 LYS 97 LEU 98 PHE 99 GLY 100 TYR 101 GLY 102 PRO 103 THR 104 GLU 105 PRO 106 LEU 107 GLN 108 PHE 109 ILE 110 ALA 111 ALA 112 PRO 113 THR 114 LEU 115 ALA 116 ASP 117 GLN 118 ALA 119 VAL 120 ARG 121 ASP 122 GLY 123 ILE 124 ARG 125 GLU 126 TRP 127 LEU 128 ASP 129 ARG 130 GLY 131 VAL 132 HIS 133 VAL 134 VAL 135 ALA 136 TYR 137 PHE 138 GLN 139 GLU 140 LYS 141 LEU 142 GLY 143 GLY 144 GLU 145 LEU 146 SER 147 ILE 148 SER 149 LYS 150 THR 151 ASP 152 SER 153 SER 154 PRO 155 GLU 156 PHE 157 SER 158 PHE 159 ASP 160 TRP 161 THR 162 LEU 163 ALA 164 GLU 165 VAL 166 GLU 167 SER 168 ILE 169 TYR 170 PRO 171 VAL 172 PRO 173 LYS 174 ILE 175 LYS 176 ARG 177 TYR 178 GLY 179 VAL 180 LEU 181 GLU 182 ILE 183 GLN 184 THR 185 MET 186 ASP 187 PHE 188 HIS 189 GLY 190 SER 191 TYR 192 LYS 193 HIS 194 ALA 195 VAL 196 GLY 197 ALA 198 ILE 199 ASP 200 ILE 201 ALA 202 LEU 203 VAL 204 GLU 205 GLY 206 ILE 207 ASP 208 PHE 209 HIS 210 GLY 211 TRP 212 LEU 213 PRO 214 THR 215 PRO 216 ALA 217 GLY 218 ARG 219 ALA 220 ALA 221 LEU 222 SER 223 LYS 224 LYS 225 MET 226 GLU 227 GLY 228 PRO 229 ASN 230 LEU 231 SER 232 ASN 233 VAL 234 PHE 235 LYS 236 ARG 237 THR 238 PHE 239 TYR 240 GLN 241 MET 242 ALA 243 TYR 244 LYS 245 PHE 246 ALA 247 LEU 248 SER 249 GLY 250 HIS 251 GLN 252 ARG 253 CYS 254 ALA 255 GLY 256 THR 257 GLY 258 PHE 259 ALA 260 ILE 261 PRO 262 GLN 263 SER 264 VAL 265 TRP 266 LYS 267 SER 268 TRP 269 LEU 270 ARG 271 HIS 272 LEU 273 ALA 274 ASN 275 PRO 276 THR 277 LEU 278 ILE 279 ASP 280 ASN 281 GLY 282 ASP 283 GLY 284 THR 285 PHE 286 SER 287 LEU 288 GLY 289 ASP 290 THR 291 ARG 292 ASN 293 ASP 294 SER 295 GLU 296 ASN 297 ALA 298 TRP 299 ILE 300 PHE 301 VAL 302 PHE 303 GLU 304 LEU 305 ASP 306 PRO 307 ASP 308 THR 309 ASP 310 ALA 311 SER 312 PRO 313 ARG 314 PRO 315 LEU 316 ALA 317 PRO 318 HIS 319 LEU 320 GLU 321 ILE 322 ARG 323 VAL 324 ASN 325 VAL 326 ASP 327 THR 328 LEU 329 ILE 330 ASP 331 LEU 332 ALA 333 LEU 334 ARG 335 GLU 336 SER 337 PRO 338 ARG 339 ALA 340 ALA 341 LEU 342 GLY 343 PRO 344 SER 345 GLY 346 PRO 347 VAL 348 ALA 349 THR 350 PHE 351 THR 352 ASP 353 LYS 354 VAL 355 GLU 356 ALA 357 ARG 358 MET 359 LEU 360 ARG 361 PHE 362 TRP 363 PRO 364 LYS 365

Unit 4

ALA 12 ASN 13 PHE 14 ILE 15 ALA 16 GLU 17 PHE 18 PHE 19 GLY 20 HIS 21 ARG 22 VAL 23 TYR 24 PRO 25 GLU 26 VAL 27 VAL 28 SER 29 THR 30 GLU 31 ALA 32 ALA 33 ARG 34 ASN 35 ASP 36 GLN 37 ALA 38 THR 39 GLY 40 THR 41 CYS 42 PRO 43 PHE 44 LEU 45 THR 46 ALA 47 ALA 48 LYS 49 LEU 50 VAL 51 GLU 52 THR 53 SER 54 CYS 55 VAL 56 LYS 57 ALA 58 GLU 59 THR 60 SER 61 ARG 62 GLY 63 VAL 64 CYS 65 VAL 66 VAL 67 ASN 68 THR 69 ALA 70 VAL 71 ASP 72 ASN 73 GLU 74 ARG 75 TYR 76 ASP 77 TRP 78 LEU 79 VAL 80 CYS 81 PRO 82 ASN 83 ARG 84 ALA 85 LEU 86 ASP 87 PRO 88 LEU 89 PHE 90 MET 91 SER 92 ALA 93 ALA 94 SER 95 ARG 96 LYS 97 LEU 98 PHE 99 GLY 100 TYR 101 GLY 102 PRO 103 THR 104 GLU 105 PRO 106 LEU 107 GLN 108 PHE 109 ILE 110 ALA 111 ALA 112 PRO 113 THR 114 LEU 115 ALA 116 ASP 117 GLN 118 ALA 119 VAL 120 ARG 121 ASP 122 GLY 123 ILE 124 ARG 125 GLU 126 TRP 127 LEU 128 ASP 129 ARG 130 GLY 131 VAL 132 HIS 133 VAL 134 VAL 135 ALA 136 TYR 137 PHE 138 GLN 139 GLU 140 LYS 141 LEU 142 GLY 143 GLY 144 GLU 145 LEU 146 SER 147 ILE 148 SER 149 LYS 150 THR 151 ASP 152 SER 153 SER 154 PRO 155 GLU 156 PHE 157 SER 158 PHE 159 ASP 160 TRP 161 THR 162 LEU 163 ALA 164 GLU 165 VAL 166 GLU 167 SER 168 ILE 169 TYR 170 PRO 171 VAL 172 PRO 173 LYS 174 ILE 175 LYS 176 ARG 177 TYR 178 GLY 179 VAL 180 LEU 181 GLU 182 ILE 183 GLN 184 THR 185 MET 186 ASP 187 PHE 188 HIS 189 GLY 190 SER 191 TYR 192 LYS 193 HIS 194 ALA 195 VAL 196 GLY 197 ALA 198 ILE 199 ASP 200 ILE 201 ALA 202 LEU 203 VAL 204 GLU 205 GLY 206 ILE 207 ASP 208 PHE 209 HIS 210 GLY 211 TRP 212 LEU 213 PRO 214 THR 215 PRO 216 ALA 217 GLY 218 ARG 219 ALA 220 ALA 221 LEU 222 SER 223 LYS 224 LYS 225 MET 226 GLU 227 GLY 228 PRO 229 ASN 230 LEU 231 SER 232 ASN 233 VAL 234 PHE 235 LYS 236 ARG 237 THR 238 PHE 239 TYR 240 GLN 241 MET 242 ALA 243 TYR 244 LYS 245 PHE 246 ALA 247 LEU 248 SER 249 GLY 250 HIS 251 GLN 252 ARG 253 CYS 254 ALA 255 GLY 256 THR 257 GLY 258 PHE 259 ALA 260 ILE 261 PRO 262 GLN 263 SER 264 VAL 265 TRP 266 LYS 267 SER 268 TRP 269 LEU 270 ARG 271 HIS 272 LEU 273 ALA 274 ASN 275 PRO 276 THR 277 LEU 278 ILE 279 ASP 280 ASN 281 GLY 282 ASP 283 GLY 284 THR 285 PHE 286 SER 287 LEU 288 GLY 289 ASP 290 THR 291 ARG 292 ASN 293 ASP 294 SER 295 GLU 296 ASN 297 ALA 298 TRP 299 ILE 300 PHE 301 VAL 302 PHE 303 GLU 304 LEU 305 ASP 306 PRO 307 ASP 308 THR 309 ASP 310 ALA 311 SER 312 PRO 313 ARG 314 PRO 315 LEU 316 ALA 317 PRO 318 HIS 319 LEU 320 GLU 321 ILE 322 ARG 323 VAL 324 ASN 325 VAL 326 ASP 327 THR 328 LEU 329 ILE 330 ASP 331 LEU 332 ALA 333 LEU 334 ARG 335 GLU 336 SER 337 PRO 338 ARG 339 ALA 340 ALA 341 LEU 342 GLY 343 PRO 344 SER 345 GLY 346 PRO 347 VAL 348 ALA 349 THR 350 PHE 351 THR 352 ASP 353 LYS 354 VAL 355 GLU 356 ALA 357 ARG 358 MET 359 LEU 360 ARG 361 PHE 362 TRP 363 PRO 364

Other macromolecules

Unit 1	DC 1 DG 2 DG 3 DA 4 DG 5 DG 6 DC 7 DG 8 DC 9 DG 10 DG 11 DC 12 DC 13 DG 14 DC 15 DG 16 DC 17 DC 18 DG 19 DC 20 DC 21 DG 22
Unit 2	DC 1 DG 2 DG 3 DC 4 DG 5 DG 6 DC 7 DG 8 DC 9 DG 10 DG 11 DC 12 DC 13 DG 14 DC 15 DG 16 DC 17 DC 18 DT 19 DC 20 DC 21 DG 22

Ligands

Unit 5	CA 801 CA 802 FE 901
Unit 6	CA 803 CA 804 FE 902