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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF HUMAN HISTONE DEACETYLASE HDAC7
Keywords HISTONE DEACETYLASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, ALTERNATIVE SPLICING, CHROMATIN REGULATOR, CYTOPLASM, HYDROLASE, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3C0Y     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HISTONE DEACETYLASE 7A  A 386 2925 0
2  Protein   HISTONE DEACETYLASE 7A  B 367 2786 0
3  Protein   HISTONE DEACETYLASE 7A  C 358 2718 0
4  Ligand   HISTONE DEACETYLASE 7A  A 4 0 4
5  Ligand   HISTONE DEACETYLASE 7A  B 4 0 4
6  Ligand   HISTONE DEACETYLASE 7A  C 4 0 4
7 Water     350 0 350
total       1473 8429 362

Proteins
Unit 1 THR515 LEU516 PRO517 PHE518 THR519 THR520 GLY521 LEU522 ILE523 TYR524 ASP525 SER526 VAL527 MET528 LEU529 LYS530 HIS531 GLN532 CYS533 SER534 CYS535 GLY536 ASP537 ASN538 SER539 ARG540 HIS541 PRO542 GLU543 HIS544 ALA545 GLY546 ARG547 ILE548 GLN549 SER550 ILE551 TRP552 SER553 ARG554 LEU555 GLN556 GLU557 ARG558 GLY559 LEU560 ARG561 SER562 GLN563 CYS564 GLU565 CYS566 LEU567 ARG568 GLY569 ARG570 LYS571 ALA572 SER573 LEU574 GLU575 GLU576 LEU577 GLN578 SER579 VAL580 HIS581 SER582 GLU583 ARG584 HIS585 VAL586 LEU587 LEU588 TYR589 GLY590 THR591 ASN592 PRO593 LEU594 SER595 ARG596 LEU597 LYS598 LEU599 ASP600 ASN601 GLY602 LYS603 LEU604 ALA605 GLY606 LEU607 LEU608 ALA609 GLN610 ARG611 MET612 PHE613 VAL614 MET615 LEU616 PRO617 CYS618 GLY619 GLY620 VAL621 GLY622 VAL623 ASP624 THR625 ASP626 THR627 ILE628 TRP629 ASN630 GLU631 LEU632 HIS633 SER634 SER635 ASN636 ALA637 ALA638 ARG639 TRP640 ALA641 ALA642 GLY643 SER644 VAL645 THR646 ASP647 LEU648 ALA649 PHE650 LYS651 VAL652 ALA653 SER654 ARG655 GLU656 LEU657 LYS658 ASN659 GLY660 PHE661 ALA662 VAL663 VAL664 ARG665 PRO666 PRO667 GLY668 HIS669 HIS670 ALA671 ASP672 HIS673 SER674 THR675 ALA676 MET677 GLY678 PHE679 CYS680 PHE681 PHE682 ASN683 SER684 VAL685 ALA686 ILE687 ALA688 CYS689 ARG690 GLN691 LEU692 GLN693 GLN694 GLN695 SER696 LYS697 ALA698 SER699 LYS700 ILE701 LEU702 ILE703 VAL704 ASP705 TRP706 ASP707 VAL708 HIS709 HIS710 GLY711 ASN712 GLY713 THR714 GLN715 GLN716 THR717 PHE718 TYR719 GLN720 ASP721 PRO722 SER723 VAL724 LEU725 TYR726 ILE727 SER728 LEU729 HIS730 ARG731 HIS732 ASP733 ASP734 GLY735 ASN736 PHE737 PHE738 PRO739 GLY740 SER741 GLY742 ALA743 VAL744 ASP745 GLU746 VAL747 GLY748 ALA749 GLY750 SER751 GLY752 GLU753 GLY754 PHE755 ASN756 VAL757 ASN758 VAL759 ALA760 TRP761 ALA762 GLY763 GLY764 LEU765 ASP766 PRO767 PRO768 MET769 GLY770 ASP771 PRO772 GLU773 TYR774 LEU775 ALA776 ALA777 PHE778 ARG779 ILE780 VAL781 VAL782 MET783 PRO784 ILE785 ALA786 ARG787 GLU788 PHE789 SER790 PRO791 ASP792 LEU793 VAL794 LEU795 VAL796 SER797 ALA798 GLY799 PHE800 ASP801 ALA802 ALA803 GLU804 GLY805 HIS806 PRO807 ALA808 PRO809 LEU810 GLY811 GLY812 TYR813 HIS814 VAL815 SER816 ALA817 LYS818 CYS819 PHE820 GLY821 TYR822 MET823 THR824 GLN825 GLN826 LEU827 MET828 ASN829 LEU830 ALA831 GLY832 GLY833 ALA834 VAL835 VAL836 LEU837 ALA838 LEU839 GLU840 GLY841 GLY842 HIS843 ASP844 LEU845 THR846 ALA847 ILE848 CYS849 ASP850 ALA851 SER852 GLU853 ALA854 CYS855 VAL856 ALA857 ALA858 LEU859 LEU860 GLY861 ASN862 ARG863 VAL864 ASP865 PRO866 LEU867 SER868 GLU869 GLU870 GLY871 TRP872 LYS873 GLN874 LYS875 PRO876 ASN877 LEU878 ASN879 ALA880 ILE881 ARG882 SER883 LEU884 GLU885 ALA886 VAL887 ILE888 ARG889 VAL890 HIS891 SER892 LYS893 TYR894 TRP895 GLY896 CYS897 MET898 GLN899 ARG900
Unit 2 PRO517 PHE518 THR519 THR520 GLY521 LEU522 ILE523 TYR524 ASP525 SER526 VAL527 MET528 LEU529 LYS530 HIS531 GLN532 CYS533 SER534 CYS535 GLY536 ASP537 ASN538 SER539 ARG540 HIS541 PRO542 GLU543 HIS544 ALA545 GLY546 ARG547 ILE548 GLN549 SER550 ILE551 TRP552 SER553 ARG554 LEU555 GLN556 GLU557 ARG558 GLY559 LEU560 ARG561 SER562 GLN563 CYS564 GLU565 CYS566 LEU567 ARG568 GLY569 ARG570 LYS571 ALA572 SER573 LEU574 GLU575 GLU576 LEU577 GLN578 SER579 VAL580 HIS581 SER582 GLU583 ARG584 HIS585 VAL586 LEU587 LEU588 TYR589 GLY590 THR591 ASN592 PRO593 LEU594 SER595 VAL614 MET615 LEU616 PRO617 CYS618 GLY619 GLY620 VAL621 GLY622 VAL623 ASP624 THR625 ASP626 THR627 ILE628 TRP629 ASN630 GLU631 LEU632 HIS633 SER634 SER635 ASN636 ALA637 ALA638 ARG639 TRP640 ALA641 ALA642 GLY643 SER644 VAL645 THR646 ASP647 LEU648 ALA649 PHE650 LYS651 VAL652 ALA653 SER654 ARG655 GLU656 LEU657 LYS658 ASN659 GLY660 PHE661 ALA662 VAL663 VAL664 ARG665 PRO666 PRO667 GLY668 HIS669 HIS670 ALA671 ASP672 HIS673 SER674 THR675 ALA676 MET677 GLY678 PHE679 CYS680 PHE681 PHE682 ASN683 SER684 VAL685 ALA686 ILE687 ALA688 CYS689 ARG690 GLN691 LEU692 GLN693 GLN694 GLN695 SER696 LYS697 ALA698 SER699 LYS700 ILE701 LEU702 ILE703 VAL704 ASP705 TRP706 ASP707 VAL708 HIS709 HIS710 GLY711 ASN712 GLY713 THR714 GLN715 GLN716 THR717 PHE718 TYR719 GLN720 ASP721 PRO722 SER723 VAL724 LEU725 TYR726 ILE727 SER728 LEU729 HIS730 ARG731 HIS732 ASP733 ASP734 GLY735 ASN736 PHE737 PHE738 PRO739 GLY740 SER741 GLY742 ALA743 VAL744 ASP745 GLU746 VAL747 GLY748 ALA749 GLY750 SER751 GLY752 GLU753 GLY754 PHE755 ASN756 VAL757 ASN758 VAL759 ALA760 TRP761 ALA762 GLY763 GLY764 LEU765 ASP766 PRO767 PRO768 MET769 GLY770 ASP771 PRO772 GLU773 TYR774 LEU775 ALA776 ALA777 PHE778 ARG779 ILE780 VAL781 VAL782 MET783 PRO784 ILE785 ALA786 ARG787 GLU788 PHE789 SER790 PRO791 ASP792 LEU793 VAL794 LEU795 VAL796 SER797 ALA798 GLY799 PHE800 ASP801 ALA802 ALA803 GLU804 GLY805 HIS806 PRO807 ALA808 PRO809 LEU810 GLY811 GLY812 TYR813 HIS814 VAL815 SER816 ALA817 LYS818 CYS819 PHE820 GLY821 TYR822 MET823 THR824 GLN825 GLN826 LEU827 MET828 ASN829 LEU830 ALA831 GLY832 GLY833 ALA834 VAL835 VAL836 LEU837 ALA838 LEU839 GLU840 GLY841 GLY842 HIS843 ASP844 LEU845 THR846 ALA847 ILE848 CYS849 ASP850 ALA851 SER852 GLU853 ALA854 CYS855 VAL856 ALA857 ALA858 LEU859 LEU860 GLY861 ASN862 ARG863 VAL864 ASP865 PRO866 LEU867 SER868 GLU869 GLU870 GLY871 TRP872 LYS873 GLN874 LYS875 PRO876 ASN877 LEU878 ASN879 ALA880 ILE881 ARG882 SER883 LEU884 GLU885 ALA886 VAL887 ILE888 ARG889 VAL890 HIS891 SER892 LYS893 TYR894 TRP895 GLY896 CYS897 MET898 GLN899 ARG900 LEU901
Unit 3 THR519 THR520 GLY521 LEU522 ILE523 TYR524 ASP525 SER526 VAL527 MET528 LEU529 LYS530 HIS531 GLN532 CYS533 SER534 CYS535 GLY536 ASP537 ASN538 SER539 ARG540 HIS541 PRO542 GLU543 HIS544 ALA545 GLY546 ARG547 ILE548 GLN549 SER550 ILE551 TRP552 SER553 ARG554 LEU555 GLN556 GLU557 ARG558 GLY559 LEU560 ARG561 SER562 GLN563 CYS564 GLU565 CYS566 LEU567 ARG568 GLY569 ARG570 LYS571 ALA572 SER573 LEU574 GLU575 GLU576 LEU577 GLN578 SER579 VAL580 HIS581 SER582 GLU583 ARG584 HIS585 VAL586 LEU587 LEU588 TYR589 GLY590 THR591 ASN592 LEU616 PRO617 CYS618 GLY619 GLY620 VAL621 GLY622 VAL623 ASP624 THR625 ASP626 THR627 ILE628 TRP629 ASN630 GLU631 LEU632 HIS633 SER634 SER635 ASN636 ALA637 ALA638 ARG639 TRP640 ALA641 ALA642 GLY643 SER644 VAL645 THR646 ASP647 LEU648 ALA649 PHE650 LYS651 VAL652 ALA653 SER654 ARG655 GLU656 LEU657 LYS658 ASN659 GLY660 PHE661 ALA662 VAL663 VAL664 ARG665 PRO666 PRO667 GLY668 HIS669 HIS670 ALA671 ASP672 HIS673 SER674 THR675 ALA676 MET677 GLY678 PHE679 CYS680 PHE681 PHE682 ASN683 SER684 VAL685 ALA686 ILE687 ALA688 CYS689 ARG690 GLN691 LEU692 GLN693 GLN694 GLN695 SER696 LYS697 ALA698 SER699 LYS700 ILE701 LEU702 ILE703 VAL704 ASP705 TRP706 ASP707 VAL708 HIS709 HIS710 GLY711 ASN712 GLY713 THR714 GLN715 GLN716 THR717 PHE718 TYR719 GLN720 ASP721 PRO722 SER723 VAL724 LEU725 TYR726 ILE727 SER728 LEU729 HIS730 ARG731 HIS732 ASP733 ASP734 GLY735 ASN736 PHE737 PHE738 PRO739 GLY740 SER741 GLY742 ALA743 VAL744 ASP745 GLU746 VAL747 GLY748 ALA749 GLY750 SER751 GLY752 GLU753 GLY754 PHE755 ASN756 VAL757 ASN758 VAL759 ALA760 TRP761 ALA762 GLY763 GLY764 LEU765 ASP766 PRO767 PRO768 MET769 GLY770 ASP771 PRO772 GLU773 TYR774 LEU775 ALA776 ALA777 PHE778 ARG779 ILE780 VAL781 VAL782 MET783 PRO784 ILE785 ALA786 ARG787 GLU788 PHE789 SER790 PRO791 ASP792 LEU793 VAL794 LEU795 VAL796 SER797 ALA798 GLY799 PHE800 ASP801 ALA802 ALA803 GLU804 GLY805 HIS806 PRO807 ALA808 PRO809 LEU810 GLY811 GLY812 TYR813 HIS814 VAL815 SER816 ALA817 LYS818 CYS819 PHE820 GLY821 TYR822 MET823 THR824 GLN825 GLN826 LEU827 MET828 ASN829 LEU830 ALA831 GLY832 GLY833 ALA834 VAL835 VAL836 LEU837 ALA838 LEU839 GLU840 GLY841 GLY842 HIS843 ASP844 LEU845 THR846 ALA847 ILE848 CYS849 ASP850 ALA851 SER852 GLU853 ALA854 CYS855 VAL856 ALA857 ALA858 LEU859 LEU860 GLY861 ASN862 ARG863 VAL864 ASP865 PRO866 LEU867 SER868 GLU869 GLU870 GLY871 TRP872 LYS873 GLN874 LYS875 PRO876 ASN877 LEU878 ASN879 ALA880 ILE881 ARG882 SER883 LEU884 GLU885 ALA886 VAL887 ILE888 ARG889 VAL890 HIS891 SER892 LYS893 TYR894 TRP895 GLY896 CYS897 MET898 GLN899

Ligands
Unit 4 ZN401 ZN402 K904 K905
Unit 5 ZN403 ZN404 K904 K905
Unit 6 ZN405 ZN406 K904 K905

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany