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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF FREE SV40 VP1 PENTAMER
Keywords SV40, POLYOMAVIRUS, GANGLIOSIDE, GM1, VIRAL RECEPTOR, VIRUS ATTACHMENT, CAPSID PROTEIN, LATE PROTEIN, NUCLEUS, VIRION, PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3BWQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CAPSID PROTEIN VP1  A 267 2055 0
2  Protein   CAPSID PROTEIN VP1  B 255 1973 0
3  Protein   CAPSID PROTEIN VP1  C 267 2055 0
4  Protein   CAPSID PROTEIN VP1  D 265 2040 0
5  Protein   CAPSID PROTEIN VP1  E 265 2041 0
6 Water     676 0 676
total       1995 10164 676
Proteins
Unit 1 GLY31 ILE32 GLU33 VAL34 LEU35 GLY36 VAL37 LYS38 THR39 GLY40 VAL41 ASP42 SER43 PHE44 THR45 GLU46 VAL47 GLU48 CYS49 PHE50 LEU51 ASN52 PRO53 GLN54 MET55 GLY56 ASN57 PRO58 ASP59 GLU60 HIS61 GLN62 LYS63 GLY64 LEU65 SER66 LYS67 SER68 LEU69 ALA70 ALA71 GLU72 LYS73 GLN74 PHE75 THR76 ASP77 ASP78 SER79 PRO80 ASP81 LYS82 GLU83 GLN84 LEU85 PRO86 CYS87 TYR88 SER89 VAL90 ALA91 ARG92 ILE93 PRO94 LEU95 PRO96 ASN97 ILE98 ASN99 GLU100 ASP101 LEU102 THR103 CYS104 GLY105 ASN106 ILE107 LEU108 MET109 TRP110 GLU111 ALA112 VAL113 THR114 VAL115 LYS116 THR117 GLU118 VAL119 ILE120 GLY121 VAL122 THR123 ALA124 MET125 LEU126 ASN127 LEU128 HIS129 SER130 GLY131 THR132 GLN133 LYS134 THR135 HIS136 GLU137 ASN138 GLY139 ALA140 GLY141 LYS142 PRO143 ILE144 GLN145 GLY146 SER147 ASN148 PHE149 HIS150 PHE151 PHE152 ALA153 VAL154 GLY155 GLY156 GLU157 PRO158 LEU159 GLU160 LEU161 GLN162 GLY163 VAL164 LEU165 ALA166 ASN167 TYR168 ARG169 THR170 LYS171 TYR172 PRO173 ALA174 GLN175 THR176 VAL177 THR178 PRO179 LYS180 ASN181 ALA182 THR183 VAL184 ASP185 SER186 GLN187 GLN188 MET189 ASN190 THR191 ASP192 HIS193 LYS194 ALA195 VAL196 LEU197 ASP198 LYS199 ASP200 ASN201 ALA202 TYR203 PRO204 VAL205 GLU206 CYS207 TRP208 VAL209 PRO210 ASP211 PRO212 SER213 LYS214 ASN215 GLU216 ASN217 THR218 ARG219 TYR220 PHE221 GLY222 THR223 TYR224 THR225 GLY226 GLY227 GLU228 ASN229 VAL230 PRO231 PRO232 VAL233 LEU234 HIS235 ILE236 THR237 ASN238 THR239 ALA240 THR241 THR242 VAL243 LEU244 LEU245 ASP246 GLU247 GLN248 GLY249 VAL250 GLY251 PRO252 LEU253 CYS254 LYS255 ALA256 ASP257 SER258 LEU259 TYR260 VAL261 SER262 ALA263 VAL264 ASP265 ILE266 CYS267 GLY268 LEU269 PHE270 THR271 ASN272 THR273 SER274 GLY275 THR276 GLN277 GLN278 TRP279 LYS280 GLY281 LEU282 PRO283 ARG284 TYR285 PHE286 LYS287 ILE288 THR289 LEU290 ARG291 LYS292 ARG293 SER294 VAL295 LYS296 ASN297
Unit 2 SER43 PHE44 THR45 GLU46 VAL47 GLU48 CYS49 PHE50 LEU51 ASN52 PRO53 GLN54 MET55 GLY56 ASN57 PRO58 ASP59 GLU60 HIS61 GLN62 LYS63 GLY64 LEU65 SER66 LYS67 SER68 LEU69 ALA70 ALA71 GLU72 LYS73 GLN74 PHE75 THR76 ASP77 ASP78 SER79 PRO80 ASP81 LYS82 GLU83 GLN84 LEU85 PRO86 CYS87 TYR88 SER89 VAL90 ALA91 ARG92 ILE93 PRO94 LEU95 PRO96 ASN97 ILE98 ASN99 GLU100 ASP101 LEU102 THR103 CYS104 GLY105 ASN106 ILE107 LEU108 MET109 TRP110 GLU111 ALA112 VAL113 THR114 VAL115 LYS116 THR117 GLU118 VAL119 ILE120 GLY121 VAL122 THR123 ALA124 MET125 LEU126 ASN127 LEU128 HIS129 SER130 GLY131 THR132 GLN133 LYS134 THR135 HIS136 GLU137 ASN138 GLY139 ALA140 GLY141 LYS142 PRO143 ILE144 GLN145 GLY146 SER147 ASN148 PHE149 HIS150 PHE151 PHE152 ALA153 VAL154 GLY155 GLY156 GLU157 PRO158 LEU159 GLU160 LEU161 GLN162 GLY163 VAL164 LEU165 ALA166 ASN167 TYR168 ARG169 THR170 LYS171 TYR172 PRO173 ALA174 GLN175 THR176 VAL177 THR178 PRO179 LYS180 ASN181 ALA182 THR183 VAL184 ASP185 SER186 GLN187 GLN188 MET189 ASN190 THR191 ASP192 HIS193 LYS194 ALA195 VAL196 LEU197 ASP198 LYS199 ASP200 ASN201 ALA202 TYR203 PRO204 VAL205 GLU206 CYS207 TRP208 VAL209 PRO210 ASP211 PRO212 SER213 LYS214 ASN215 GLU216 ASN217 THR218 ARG219 TYR220 PHE221 GLY222 THR223 TYR224 THR225 GLY226 GLY227 GLU228 ASN229 VAL230 PRO231 PRO232 VAL233 LEU234 HIS235 ILE236 THR237 ASN238 THR239 ALA240 THR241 THR242 VAL243 LEU244 LEU245 ASP246 GLU247 GLN248 GLY249 VAL250 GLY251 PRO252 LEU253 CYS254 LYS255 ALA256 ASP257 SER258 LEU259 TYR260 VAL261 SER262 ALA263 VAL264 ASP265 ILE266 CYS267 GLY268 LEU269 PHE270 THR271 ASN272 THR273 SER274 GLY275 THR276 GLN277 GLN278 TRP279 LYS280 GLY281 LEU282 PRO283 ARG284 TYR285 PHE286 LYS287 ILE288 THR289 LEU290 ARG291 LYS292 ARG293 SER294 VAL295 LYS296 ASN297
Unit 3 GLY31 ILE32 GLU33 VAL34 LEU35 GLY36 VAL37 LYS38 THR39 GLY40 VAL41 ASP42 SER43 PHE44 THR45 GLU46 VAL47 GLU48 CYS49 PHE50 LEU51 ASN52 PRO53 GLN54 MET55 GLY56 ASN57 PRO58 ASP59 GLU60 HIS61 GLN62 LYS63 GLY64 LEU65 SER66 LYS67 SER68 LEU69 ALA70 ALA71 GLU72 LYS73 GLN74 PHE75 THR76 ASP77 ASP78 SER79 PRO80 ASP81 LYS82 GLU83 GLN84 LEU85 PRO86 CYS87 TYR88 SER89 VAL90 ALA91 ARG92 ILE93 PRO94 LEU95 PRO96 ASN97 ILE98 ASN99 GLU100 ASP101 LEU102 THR103 CYS104 GLY105 ASN106 ILE107 LEU108 MET109 TRP110 GLU111 ALA112 VAL113 THR114 VAL115 LYS116 THR117 GLU118 VAL119 ILE120 GLY121 VAL122 THR123 ALA124 MET125 LEU126 ASN127 LEU128 HIS129 SER130 GLY131 THR132 GLN133 LYS134 THR135 HIS136 GLU137 ASN138 GLY139 ALA140 GLY141 LYS142 PRO143 ILE144 GLN145 GLY146 SER147 ASN148 PHE149 HIS150 PHE151 PHE152 ALA153 VAL154 GLY155 GLY156 GLU157 PRO158 LEU159 GLU160 LEU161 GLN162 GLY163 VAL164 LEU165 ALA166 ASN167 TYR168 ARG169 THR170 LYS171 TYR172 PRO173 ALA174 GLN175 THR176 VAL177 THR178 PRO179 LYS180 ASN181 ALA182 THR183 VAL184 ASP185 SER186 GLN187 GLN188 MET189 ASN190 THR191 ASP192 HIS193 LYS194 ALA195 VAL196 LEU197 ASP198 LYS199 ASP200 ASN201 ALA202 TYR203 PRO204 VAL205 GLU206 CYS207 TRP208 VAL209 PRO210 ASP211 PRO212 SER213 LYS214 ASN215 GLU216 ASN217 THR218 ARG219 TYR220 PHE221 GLY222 THR223 TYR224 THR225 GLY226 GLY227 GLU228 ASN229 VAL230 PRO231 PRO232 VAL233 LEU234 HIS235 ILE236 THR237 ASN238 THR239 ALA240 THR241 THR242 VAL243 LEU244 LEU245 ASP246 GLU247 GLN248 GLY249 VAL250 GLY251 PRO252 LEU253 CYS254 LYS255 ALA256 ASP257 SER258 LEU259 TYR260 VAL261 SER262 ALA263 VAL264 ASP265 ILE266 CYS267 GLY268 LEU269 PHE270 THR271 ASN272 THR273 SER274 GLY275 THR276 GLN277 GLN278 TRP279 LYS280 GLY281 LEU282 PRO283 ARG284 TYR285 PHE286 LYS287 ILE288 THR289 LEU290 ARG291 LYS292 ARG293 SER294 VAL295 LYS296 ASN297
Unit 4 GLY31 ILE32 GLU33 VAL34 LEU35 GLY36 VAL37 LYS38 THR39 GLY40 SER43 PHE44 THR45 GLU46 VAL47 GLU48 CYS49 PHE50 LEU51 ASN52 PRO53 GLN54 MET55 GLY56 ASN57 PRO58 ASP59 GLU60 HIS61 GLN62 LYS63 GLY64 LEU65 SER66 LYS67 SER68 LEU69 ALA70 ALA71 GLU72 LYS73 GLN74 PHE75 THR76 ASP77 ASP78 SER79 PRO80 ASP81 LYS82 GLU83 GLN84 LEU85 PRO86 CYS87 TYR88 SER89 VAL90 ALA91 ARG92 ILE93 PRO94 LEU95 PRO96 ASN97 ILE98 ASN99 GLU100 ASP101 LEU102 THR103 CYS104 GLY105 ASN106 ILE107 LEU108 MET109 TRP110 GLU111 ALA112 VAL113 THR114 VAL115 LYS116 THR117 GLU118 VAL119 ILE120 GLY121 VAL122 THR123 ALA124 MET125 LEU126 ASN127 LEU128 HIS129 SER130 GLY131 THR132 GLN133 LYS134 THR135 HIS136 GLU137 ASN138 GLY139 ALA140 GLY141 LYS142 PRO143 ILE144 GLN145 GLY146 SER147 ASN148 PHE149 HIS150 PHE151 PHE152 ALA153 VAL154 GLY155 GLY156 GLU157 PRO158 LEU159 GLU160 LEU161 GLN162 GLY163 VAL164 LEU165 ALA166 ASN167 TYR168 ARG169 THR170 LYS171 TYR172 PRO173 ALA174 GLN175 THR176 VAL177 THR178 PRO179 LYS180 ASN181 ALA182 THR183 VAL184 ASP185 SER186 GLN187 GLN188 MET189 ASN190 THR191 ASP192 HIS193 LYS194 ALA195 VAL196 LEU197 ASP198 LYS199 ASP200 ASN201 ALA202 TYR203 PRO204 VAL205 GLU206 CYS207 TRP208 VAL209 PRO210 ASP211 PRO212 SER213 LYS214 ASN215 GLU216 ASN217 THR218 ARG219 TYR220 PHE221 GLY222 THR223 TYR224 THR225 GLY226 GLY227 GLU228 ASN229 VAL230 PRO231 PRO232 VAL233 LEU234 HIS235 ILE236 THR237 ASN238 THR239 ALA240 THR241 THR242 VAL243 LEU244 LEU245 ASP246 GLU247 GLN248 GLY249 VAL250 GLY251 PRO252 LEU253 CYS254 LYS255 ALA256 ASP257 SER258 LEU259 TYR260 VAL261 SER262 ALA263 VAL264 ASP265 ILE266 CYS267 GLY268 LEU269 PHE270 THR271 ASN272 THR273 SER274 GLY275 THR276 GLN277 GLN278 TRP279 LYS280 GLY281 LEU282 PRO283 ARG284 TYR285 PHE286 LYS287 ILE288 THR289 LEU290 ARG291 LYS292 ARG293 SER294 VAL295 LYS296 ASN297
Unit 5 ILE32 GLU33 VAL34 LEU35 GLY36 VAL37 LYS38 THR39 GLY40 ASP42 SER43 PHE44 THR45 GLU46 VAL47 GLU48 CYS49 PHE50 LEU51 ASN52 PRO53 GLN54 MET55 GLY56 ASN57 PRO58 ASP59 GLU60 HIS61 GLN62 LYS63 GLY64 LEU65 SER66 LYS67 SER68 LEU69 ALA70 ALA71 GLU72 LYS73 GLN74 PHE75 THR76 ASP77 ASP78 SER79 PRO80 ASP81 LYS82 GLU83 GLN84 LEU85 PRO86 CYS87 TYR88 SER89 VAL90 ALA91 ARG92 ILE93 PRO94 LEU95 PRO96 ASN97 ILE98 ASN99 GLU100 ASP101 LEU102 THR103 CYS104 GLY105 ASN106 ILE107 LEU108 MET109 TRP110 GLU111 ALA112 VAL113 THR114 VAL115 LYS116 THR117 GLU118 VAL119 ILE120 GLY121 VAL122 THR123 ALA124 MET125 LEU126 ASN127 LEU128 HIS129 SER130 GLY131 THR132 GLN133 LYS134 THR135 HIS136 GLU137 ASN138 GLY139 ALA140 GLY141 LYS142 PRO143 ILE144 GLN145 GLY146 SER147 ASN148 PHE149 HIS150 PHE151 PHE152 ALA153 VAL154 GLY155 GLY156 GLU157 PRO158 LEU159 GLU160 LEU161 GLN162 GLY163 VAL164 LEU165 ALA166 ASN167 TYR168 ARG169 THR170 LYS171 TYR172 PRO173 ALA174 GLN175 THR176 VAL177 THR178 PRO179 LYS180 ASN181 ALA182 THR183 VAL184 ASP185 SER186 GLN187 GLN188 MET189 ASN190 THR191 ASP192 HIS193 LYS194 ALA195 VAL196 LEU197 ASP198 LYS199 ASP200 ASN201 ALA202 TYR203 PRO204 VAL205 GLU206 CYS207 TRP208 VAL209 PRO210 ASP211 PRO212 SER213 LYS214 ASN215 GLU216 ASN217 THR218 ARG219 TYR220 PHE221 GLY222 THR223 TYR224 THR225 GLY226 GLY227 GLU228 ASN229 VAL230 PRO231 PRO232 VAL233 LEU234 HIS235 ILE236 THR237 ASN238 THR239 ALA240 THR241 THR242 VAL243 LEU244 LEU245 ASP246 GLU247 GLN248 GLY249 VAL250 GLY251 PRO252 LEU253 CYS254 LYS255 ALA256 ASP257 SER258 LEU259 TYR260 VAL261 SER262 ALA263 VAL264 ASP265 ILE266 CYS267 GLY268 LEU269 PHE270 THR271 ASN272 THR273 SER274 GLY275 THR276 GLN277 GLN278 TRP279 LYS280 GLY281 LEU282 PRO283 ARG284 TYR285 PHE286 LYS287 ILE288 THR289 LEU290 ARG291 LYS292 ARG293 SER294 VAL295 LYS296 ASN297
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany