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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE TRMA WITH 19 NUCLEOTIDE T-ARM ANALOGUE
Keywords METHYLURIDINE, METHYLTRANSFERASE, TRMA, RUMT, S-ADENOSYL-L- METHIONINE, TRNA PROCESSING, TRANSFERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3BT7     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRNA (URACIL-5-)-METHYLTRANSFERASE  A 369 2955 0
2  Protein   TRNA (URACIL-5-)-METHYLTRANSFERASE  B 369 2959 0
3  RNA    C 19 381 21
4  RNA    D 19 381 21
5 Water     261 0 261
total       1037 6676 303
Proteins
Unit 1 GLY-2 SER-1 HIS0 MET1 THR2 PRO3 GLU4 HIS5 LEU6 PRO7 THR8 GLU9 GLN10 TYR11 GLU12 ALA13 GLN14 LEU15 ALA16 GLU17 LYS18 VAL19 VAL20 ARG21 LEU22 GLN23 SER24 MET25 MET26 ALA27 PRO28 PHE29 SER30 ASP31 LEU32 VAL33 PRO34 GLU35 VAL36 PHE37 ARG38 SER39 PRO40 VAL41 SER42 HIS43 TYR44 ARG45 MET46 ARG47 ALA48 GLU49 PHE50 ARG51 ILE52 TRP53 HIS54 ASP55 GLY56 ASP57 ASP58 LEU59 TYR60 HIS61 ILE62 ILE63 PHE64 ASP65 GLN66 GLN67 THR68 LYS69 SER70 ARG71 ILE72 ARG73 VAL74 ASP75 SER76 PHE77 PRO78 ALA79 ALA80 SER81 GLU82 LEU83 ILE84 ASN85 GLN86 LEU87 MET88 THR89 ALA90 MET91 ILE92 ALA93 GLY94 VAL95 ARG96 ASN97 ASN98 PRO99 VAL100 LEU101 ARG102 HIS103 LYS104 LEU105 PHE106 GLN107 ILE108 ASP109 TYR110 LEU111 THR112 THR113 LEU114 SER115 ASN116 GLN117 ALA118 VAL119 VAL120 SER121 LEU122 LEU123 TYR124 HIS125 LYS126 LYS127 LEU128 ASP129 ASP130 GLU131 TRP132 ARG133 GLN134 GLU135 ALA136 GLU137 ALA138 LEU139 ARG140 ASP141 ALA142 LEU143 ARG144 ALA145 GLN146 ASN147 LEU148 ASN149 VAL150 HIS151 LEU152 ILE153 GLY154 ARG155 ALA156 THR157 LYS158 THR159 LYS160 ILE161 GLU162 LEU163 ASP164 GLN165 ASP166 TYR167 ILE168 ASP169 GLU170 ARG171 LEU172 PRO173 VAL174 ALA175 GLY176 LYS177 GLU178 MET179 ILE180 TYR181 ARG182 GLN183 VAL184 GLU185 ASN186 SER187 PHE188 THR189 GLN190 PRO191 ASN192 ALA193 ALA194 MET195 ASN196 ILE197 GLN198 MET199 LEU200 GLU201 TRP202 ALA203 LEU204 ASP205 VAL206 THR207 LYS208 GLY209 SER210 LYS211 GLY212 ASP213 LEU214 LEU215 GLU216 LEU217 TYR218 CYS219 GLY220 ASN221 GLY222 ASN223 PHE224 SER225 LEU226 ALA227 LEU228 ALA229 ARG230 ASN231 PHE232 ASP233 ARG234 VAL235 LEU236 ALA237 THR238 GLU239 ILE240 ALA241 LYS242 PRO243 SER244 VAL245 ALA246 ALA247 ALA248 GLN249 TYR250 ASN251 ILE252 ALA253 ALA254 ASN255 HIS256 ILE257 ASP258 ASN259 VAL260 GLN261 ILE262 ILE263 ARG264 MET265 ALA266 ALA267 GLU268 GLU269 PHE270 THR271 GLN272 ALA273 MET274 ASN275 GLY276 VAL277 ARG278 GLU279 PHE280 ASN281 ARG282 LEU283 GLN284 GLY285 ILE286 ASP287 LEU288 LYS289 SER290 TYR291 GLN292 CYS293 GLU294 THR295 ILE296 PHE297 VAL298 ASP299 PRO300 PRO301 ARG302 SER303 GLY304 LEU305 ASP306 SER307 GLU308 THR309 GLU310 LYS311 MET312 VAL313 GLN314 ALA315 TYR316 PRO317 ARG318 ILE319 LEU320 TYR321 ILE322 SER323 CYS324 ASN325 PRO326 GLU327 THR328 LEU329 CYS330 LYS331 ASN332 LEU333 GLU334 THR335 LEU336 SER337 GLN338 THR339 HIS340 LYS341 VAL342 GLU343 ARG344 LEU345 ALA346 LEU347 PHE348 ASP349 GLN350 PHE351 PRO352 TYR353 THR354 HIS355 HIS356 MET357 GLN358 CYS359 GLY360 VAL361 LEU362 LEU363 THR364 ALA365 LYS366
Unit 2 GLY-2 SER-1 HIS0 MET1 THR2 PRO3 GLU4 HIS5 LEU6 PRO7 THR8 GLU9 GLN10 TYR11 GLU12 ALA13 GLN14 LEU15 ALA16 GLU17 LYS18 VAL19 VAL20 ARG21 LEU22 GLN23 SER24 MET25 MET26 ALA27 PRO28 PHE29 SER30 ASP31 LEU32 VAL33 PRO34 GLU35 VAL36 PHE37 ARG38 SER39 PRO40 VAL41 SER42 HIS43 TYR44 ARG45 MET46 ARG47 ALA48 GLU49 PHE50 ARG51 ILE52 TRP53 HIS54 ASP55 GLY56 ASP57 ASP58 LEU59 TYR60 HIS61 ILE62 ILE63 PHE64 ASP65 GLN66 GLN67 THR68 LYS69 SER70 ARG71 ILE72 ARG73 VAL74 ASP75 SER76 PHE77 PRO78 ALA79 ALA80 SER81 GLU82 LEU83 ILE84 ASN85 GLN86 LEU87 MET88 THR89 ALA90 MET91 ILE92 ALA93 GLY94 VAL95 ARG96 ASN97 ASN98 PRO99 VAL100 LEU101 ARG102 HIS103 LYS104 LEU105 PHE106 GLN107 ILE108 ASP109 TYR110 LEU111 THR112 THR113 LEU114 SER115 ASN116 GLN117 ALA118 VAL119 VAL120 SER121 LEU122 LEU123 TYR124 HIS125 LYS126 LYS127 LEU128 ASP129 ASP130 GLU131 TRP132 ARG133 GLN134 GLU135 ALA136 GLU137 ALA138 LEU139 ARG140 ASP141 ALA142 LEU143 ARG144 ALA145 GLN146 ASN147 LEU148 ASN149 VAL150 HIS151 LEU152 ILE153 GLY154 ARG155 ALA156 THR157 LYS158 THR159 LYS160 ILE161 GLU162 LEU163 ASP164 GLN165 ASP166 TYR167 ILE168 ASP169 GLU170 ARG171 LEU172 PRO173 VAL174 ALA175 GLY176 LYS177 GLU178 MET179 ILE180 TYR181 ARG182 GLN183 VAL184 GLU185 ASN186 SER187 PHE188 THR189 GLN190 PRO191 ASN192 ALA193 ALA194 MET195 ASN196 ILE197 GLN198 MET199 LEU200 GLU201 TRP202 ALA203 LEU204 ASP205 VAL206 THR207 LYS208 GLY209 SER210 LYS211 GLY212 ASP213 LEU214 LEU215 GLU216 LEU217 TYR218 CYS219 GLY220 ASN221 GLY222 ASN223 PHE224 SER225 LEU226 ALA227 LEU228 ALA229 ARG230 ASN231 PHE232 ASP233 ARG234 VAL235 LEU236 ALA237 THR238 GLU239 ILE240 ALA241 LYS242 PRO243 SER244 VAL245 ALA246 ALA247 ALA248 GLN249 TYR250 ASN251 ILE252 ALA253 ALA254 ASN255 HIS256 ILE257 ASP258 ASN259 VAL260 GLN261 ILE262 ILE263 ARG264 MET265 ALA266 ALA267 GLU268 GLU269 PHE270 THR271 GLN272 ALA273 MET274 ASN275 GLY276 VAL277 ARG278 GLU279 PHE280 ASN281 ARG282 LEU283 GLN284 GLY285 ILE286 ASP287 LEU288 LYS289 SER290 TYR291 GLN292 CYS293 GLU294 THR295 ILE296 PHE297 VAL298 ASP299 PRO300 PRO301 ARG302 SER303 GLY304 LEU305 ASP306 SER307 GLU308 THR309 GLU310 LYS311 MET312 VAL313 GLN314 ALA315 TYR316 PRO317 ARG318 ILE319 LEU320 TYR321 ILE322 SER323 CYS324 ASN325 PRO326 GLU327 THR328 LEU329 CYS330 LYS331 ASN332 LEU333 GLU334 THR335 LEU336 SER337 GLN338 THR339 HIS340 LYS341 VAL342 GLU343 ARG344 LEU345 ALA346 LEU347 PHE348 ASP349 GLN350 PHE351 PRO352 TYR353 THR354 HIS355 HIS356 MET357 GLN358 CYS359 GLY360 VAL361 LEU362 LEU363 THR364 ALA365 LYS366
Nucleic acids
Unit 3 G48 C49 U50 G51 U52 G53 5MU54 U55 C56 G57 A58 U59 C60 C61 A62 C63 A64 G65 C66
Unit 4 G48 C49 U50 G51 U52 G53 5MU54 U55 C56 G57 A58 U59 C60 C61 A62 C63 A64 G65 C66
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany