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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE STAPHYLOCOCCUS AUREUS AGRA LYTTR DOMAIN BOUND TO DNA REVEALS A BETA FOLD WITH A NOVEL MODE OF BINDING
Keywords LYTTR, AGRA, RESPONSE REGULATOR, DNA BINDING DOMAIN, ACTIVATOR, CYTOPLASM, DNA-BINDING, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, TWO-COMPONENT REGULATORY SYSTEM, TRANSCRIPTION REGULATOR
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3BS1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ACCESSORY GENE REGULATOR PROTEIN A  A 103 869 0
2  DNA    B 16 306 20
3  DNA    C 16 304 20
4  Ligand   ACCESSORY GENE REGULATOR PROTEIN A  A 2 0 2
5 Water     223 0 223
total       360 1479 265

Proteins
Unit 1 MET136 ASP137 ASN138 SER139 VAL140 GLU141 THR142 ILE143 GLU144 LEU145 LYS146 ARG147 GLY148 SER149 ASN150 SER151 VAL152 TYR153 VAL154 GLN155 TYR156 ASP157 ASP158 ILE159 MET160 PHE161 PHE162 GLU163 SER164 SER165 THR166 LYS167 SER168 HIS169 ARG170 LEU171 ILE172 ALA173 HIS174 LEU175 ASP176 ASN177 ARG178 GLN179 ILE180 GLU181 PHE182 TYR183 GLY184 ASN185 LEU186 LYS187 GLU188 LEU189 SER190 GLN191 LEU192 ASP193 ASP194 ARG195 PHE196 PHE197 ARG198 CYS199 HIS200 ASN201 SER202 PHE203 VAL204 VAL205 ASN206 ARG207 HIS208 ASN209 ILE210 GLU211 SER212 ILE213 ASP214 SER215 LYS216 GLU217 ARG218 ILE219 VAL220 TYR221 PHE222 LYS223 ASN224 LYS225 GLU226 HIS227 CYS228 TYR229 ALA230 SER231 VAL232 ARG233 ASN234 VAL235 LYS236 LYS237 ILE238

Nucleic acids
Unit 2 DT1 DT2 DT3 DA4 DA5 DC6 DA7 DG8 DT9 DT10 DA11 DA12 DG13 BRU14 DA15 DT16
Unit 3 DA1 DA2 BRU3 DA4 DC5 DT6 DT7 DA8 DA9 DC10 DT11 DG12 DT13 DT14 DA15 DA16

Ligands
Unit 4 MG1 MG2

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany