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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE RAP-RAPGAP COMPLEX
Keywords GAP, G PROTEINS, GTPASE, RAP, GTPASE ACTIVATION, GTP- BINDING, GTP BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3BRW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RAP1 GTPASE-ACTIVATING PROTEIN 1  A 336 2706 0
2  Protein   RAP1 GTPASE-ACTIVATING PROTEIN 1  B 337 2709 0
3  Protein   RAP1 GTPASE-ACTIVATING PROTEIN 1  C 332 2675 0
4  Protein   RAS-RELATED PROTEIN RAP-1B  D 167 1332 0
5  Ligand   RAS-RELATED PROTEIN RAP-1B  D 3 0 33
6 Water     10 0 10
total       1185 9422 43

Proteins
Unit 1 THR76 THR77 LYS78 VAL79 LYS80 LEU81 GLU82 CYS83 ASN84 PRO85 THR86 ALA87 ARG88 ILE89 TYR90 ARG91 LYS92 HIS93 PHE94 LEU95 GLY96 LYS97 GLU98 HIS99 PHE100 ASN101 TYR102 TYR103 SER104 LEU105 ASP106 THR107 ALA108 LEU109 GLY110 HIS111 LEU112 VAL113 PHE114 SER115 LEU116 LYS117 TYR118 ASP119 VAL120 ILE121 GLY122 ASP123 GLN124 GLU125 HIS126 LEU127 ARG128 LEU129 LEU130 LEU131 ARG132 THR133 LYS134 CYS135 ARG136 THR137 TYR138 HIS139 ASP140 VAL141 ILE142 PRO143 ILE144 SER145 CYS146 LEU147 THR148 GLU149 PHE150 PRO151 ASN152 VAL153 VAL154 GLN155 MET156 ALA157 LYS158 LEU159 VAL160 CYS161 GLU162 ASP163 VAL164 ASN165 VAL166 ASP167 ARG168 PHE169 TYR170 PRO171 VAL172 LEU173 TYR174 PRO175 LYS176 ALA177 SER178 ARG179 LEU180 ILE181 VAL182 THR183 PHE184 ASP185 GLU186 HIS187 VAL188 ILE189 SER190 ASN191 ASN192 PHE193 LYS194 PHE195 GLY196 VAL197 ILE198 TYR199 GLN200 LYS201 LEU202 GLY203 ALA204 THR205 SER206 GLU207 GLU208 GLU209 LEU210 PHE211 SER212 THR213 ASN214 GLU215 GLU216 SER217 PRO218 ALA219 PHE220 VAL221 GLU222 PHE223 LEU224 GLU225 PHE226 LEU227 GLY228 GLN229 LYS230 VAL231 LYS232 LEU233 GLN234 ASP235 PHE236 LYS237 GLY238 PHE239 ARG240 GLY241 GLY242 LEU243 ASP244 VAL245 THR246 HIS247 GLY248 GLN249 THR250 GLY251 THR252 GLU253 SER254 VAL255 TYR256 CYS257 ASN258 PHE259 ARG260 ASN261 LYS262 GLU263 ILE264 MET265 PHE266 HIS267 VAL268 SER269 THR270 LYS271 LEU272 PRO273 TYR274 THR275 GLU276 GLY277 ASP278 ALA279 GLN280 GLN281 LEU282 GLN283 ARG284 LYS285 ARG286 HIS287 ILE288 GLY289 ASN290 ASP291 ILE292 VAL293 ALA294 VAL295 VAL296 PHE297 GLN298 ASP299 GLU300 ASN301 THR302 PRO303 PHE304 VAL305 PRO306 ASP307 MET308 ILE309 ALA310 SER311 ASN312 PHE313 LEU314 HIS315 ALA316 TYR317 VAL318 VAL319 VAL320 GLN321 ALA322 GLU323 GLY324 GLY325 GLY326 PRO327 ASP328 GLY329 PRO330 LEU331 TYR332 LYS333 VAL334 SER335 VAL336 THR337 ALA338 ARG339 ASP340 ASP341 VAL342 PRO343 PHE344 PHE345 GLY346 PRO347 PRO348 LEU349 PRO350 ASP351 PRO352 ALA353 VAL354 PHE355 ARG356 LYS357 GLY358 PRO359 GLU360 PHE361 GLN362 GLU363 PHE364 LEU365 LEU366 THR367 LYS368 LEU369 ILE370 ASN371 ALA372 GLU373 TYR374 ALA375 CYS376 TYR377 LYS378 ALA379 GLU380 LYS381 PHE382 ALA383 LYS384 LEU385 GLU386 GLU387 ARG388 THR389 ARG390 ALA391 ALA392 LEU393 LEU394 GLU395 THR396 LEU397 TYR398 GLU399 GLU400 LEU401 HIS402 ILE403 HIS404 SER405 GLN406 SER407 MET408 MET409 GLY410 LEU411
Unit 2 LYS78 VAL79 LYS80 LEU81 GLU82 CYS83 ASN84 PRO85 THR86 ALA87 ARG88 ILE89 TYR90 ARG91 LYS92 HIS93 PHE94 LEU95 GLY96 LYS97 GLU98 HIS99 PHE100 ASN101 TYR102 TYR103 SER104 LEU105 ASP106 THR107 ALA108 LEU109 GLY110 HIS111 LEU112 VAL113 PHE114 SER115 LEU116 LYS117 TYR118 ASP119 VAL120 ILE121 GLY122 ASP123 GLN124 GLU125 HIS126 LEU127 ARG128 LEU129 LEU130 LEU131 ARG132 THR133 LYS134 CYS135 ARG136 THR137 TYR138 HIS139 ASP140 VAL141 ILE142 PRO143 ILE144 SER145 CYS146 LEU147 THR148 GLU149 PHE150 PRO151 ASN152 VAL153 VAL154 GLN155 MET156 ALA157 LYS158 LEU159 VAL160 CYS161 GLU162 ASP163 VAL164 ASN165 VAL166 ASP167 ARG168 PHE169 TYR170 PRO171 VAL172 LEU173 TYR174 PRO175 LYS176 ALA177 SER178 ARG179 LEU180 ILE181 VAL182 THR183 PHE184 ASP185 GLU186 HIS187 VAL188 ILE189 SER190 ASN191 ASN192 PHE193 LYS194 PHE195 GLY196 VAL197 ILE198 TYR199 GLN200 LYS201 LEU202 GLY203 ALA204 THR205 SER206 GLU207 GLU208 GLU209 LEU210 PHE211 SER212 THR213 ASN214 GLU215 GLU216 SER217 PRO218 ALA219 PHE220 VAL221 GLU222 PHE223 LEU224 GLU225 PHE226 LEU227 GLY228 GLN229 LYS230 VAL231 LYS232 LEU233 GLN234 ASP235 PHE236 LYS237 GLY238 PHE239 ARG240 GLY241 GLY242 LEU243 ASP244 VAL245 THR246 HIS247 GLY248 GLN249 THR250 GLY251 THR252 GLU253 SER254 VAL255 TYR256 CYS257 ASN258 PHE259 ARG260 ASN261 LYS262 GLU263 ILE264 MET265 PHE266 HIS267 VAL268 SER269 THR270 LYS271 LEU272 PRO273 TYR274 THR275 GLU276 GLY277 ASP278 ALA279 GLN280 GLN281 LEU282 GLN283 ARG284 LYS285 ARG286 HIS287 ILE288 GLY289 ASN290 ASP291 ILE292 VAL293 ALA294 VAL295 VAL296 PHE297 GLN298 ASP299 GLU300 ASN301 THR302 PRO303 PHE304 VAL305 PRO306 ASP307 MET308 ILE309 ALA310 SER311 ASN312 PHE313 LEU314 HIS315 ALA316 TYR317 VAL318 VAL319 VAL320 GLN321 ALA322 GLU323 GLY324 GLY325 GLY326 PRO327 ASP328 GLY329 PRO330 LEU331 TYR332 LYS333 VAL334 SER335 VAL336 THR337 ALA338 ARG339 ASP340 ASP341 VAL342 PRO343 PHE344 PHE345 GLY346 PRO347 PRO348 LEU349 PRO350 ASP351 PRO352 ALA353 VAL354 PHE355 ARG356 LYS357 GLY358 PRO359 GLU360 PHE361 GLN362 GLU363 PHE364 LEU365 LEU366 THR367 LYS368 LEU369 ILE370 ASN371 ALA372 GLU373 TYR374 ALA375 CYS376 TYR377 LYS378 ALA379 GLU380 LYS381 PHE382 ALA383 LYS384 LEU385 GLU386 GLU387 ARG388 THR389 ARG390 ALA391 ALA392 LEU393 LEU394 GLU395 THR396 LEU397 TYR398 GLU399 GLU400 LEU401 HIS402 ILE403 HIS404 SER405 GLN406 SER407 MET408 MET409 GLY410 LEU411 GLY412 GLY413 ASP414
Unit 3 LYS78 VAL79 LYS80 LEU81 GLU82 CYS83 ASN84 PRO85 THR86 ALA87 ARG88 ILE89 TYR90 ARG91 LYS92 HIS93 PHE94 LEU95 GLY96 LYS97 GLU98 HIS99 PHE100 ASN101 TYR102 TYR103 SER104 LEU105 ASP106 THR107 ALA108 LEU109 GLY110 HIS111 LEU112 VAL113 PHE114 SER115 LEU116 LYS117 TYR118 ASP119 VAL120 ILE121 GLY122 ASP123 GLN124 GLU125 HIS126 LEU127 ARG128 LEU129 LEU130 LEU131 ARG132 THR133 LYS134 CYS135 ARG136 THR137 TYR138 HIS139 ASP140 VAL141 ILE142 PRO143 ILE144 SER145 CYS146 LEU147 THR148 GLU149 PHE150 PRO151 ASN152 VAL153 VAL154 GLN155 MET156 ALA157 LYS158 LEU159 VAL160 CYS161 GLU162 ASP163 VAL164 ASN165 VAL166 ASP167 ARG168 PHE169 TYR170 PRO171 VAL172 LEU173 TYR174 PRO175 LYS176 ALA177 SER178 ARG179 LEU180 ILE181 VAL182 THR183 PHE184 ASP185 GLU186 HIS187 VAL188 ILE189 SER190 ASN191 ASN192 PHE193 LYS194 PHE195 GLY196 VAL197 ILE198 TYR199 GLN200 LYS201 LEU202 GLY203 ALA204 THR205 SER206 GLU207 GLU208 GLU209 LEU210 PHE211 SER212 THR213 ASN214 GLU215 GLU216 SER217 PRO218 ALA219 PHE220 VAL221 GLU222 PHE223 LEU224 GLU225 PHE226 LEU227 GLY228 GLN229 LYS230 VAL231 LYS232 LEU233 GLN234 ASP235 PHE236 LYS237 GLY238 PHE239 ARG240 GLY241 GLY242 LEU243 ASP244 VAL245 THR246 HIS247 GLY248 GLN249 THR250 GLY251 THR252 GLU253 SER254 VAL255 TYR256 CYS257 ASN258 PHE259 ARG260 ASN261 LYS262 GLU263 ILE264 MET265 PHE266 HIS267 VAL268 SER269 THR270 LYS271 LEU272 PRO273 TYR274 THR275 GLU276 GLY277 ASP278 ALA279 GLN280 GLN281 LEU282 GLN283 ARG284 LYS285 ARG286 HIS287 ILE288 GLY289 ASN290 ASP291 ILE292 VAL293 ALA294 VAL295 VAL296 PHE297 GLN298 ASP299 GLU300 ASN301 THR302 PRO303 PHE304 VAL305 PRO306 ASP307 MET308 ILE309 ALA310 SER311 ASN312 PHE313 LEU314 HIS315 ALA316 TYR317 VAL318 VAL319 VAL320 GLN321 ALA322 GLU323 GLY324 GLY325 PRO330 LEU331 TYR332 LYS333 VAL334 SER335 VAL336 THR337 ALA338 ARG339 ASP340 ASP341 VAL342 PRO343 PHE344 PHE345 GLY346 PRO347 PRO348 LEU349 PRO350 ASP351 PRO352 ALA353 VAL354 PHE355 ARG356 LYS357 GLY358 PRO359 GLU360 PHE361 GLN362 GLU363 PHE364 LEU365 LEU366 THR367 LYS368 LEU369 ILE370 ASN371 ALA372 GLU373 TYR374 ALA375 CYS376 TYR377 LYS378 ALA379 GLU380 LYS381 PHE382 ALA383 LYS384 LEU385 GLU386 GLU387 ARG388 THR389 ARG390 ALA391 ALA392 LEU393 LEU394 GLU395 THR396 LEU397 TYR398 GLU399 GLU400 LEU401 HIS402 ILE403 HIS404 SER405 GLN406 SER407 MET408 MET409 GLY410 LEU411 GLY412 GLY413
Unit 4 MET1 ARG2 GLU3 TYR4 LYS5 LEU6 VAL7 VAL8 LEU9 GLY10 SER11 GLY12 GLY13 VAL14 GLY15 LYS16 SER17 ALA18 LEU19 THR20 VAL21 GLN22 PHE23 VAL24 GLN25 GLY26 ILE27 PHE28 VAL29 GLU30 LYS31 TYR32 ASP33 PRO34 THR35 ILE36 GLU37 ASP38 SER39 TYR40 ARG41 LYS42 GLN43 VAL44 GLU45 VAL46 ASP47 ALA48 GLN49 GLN50 CYS51 MET52 LEU53 GLU54 ILE55 LEU56 ASP57 THR58 ALA59 GLY60 THR61 GLU62 GLN63 PHE64 THR65 ALA66 MET67 ARG68 ASP69 LEU70 TYR71 MET72 LYS73 ASN74 GLY75 GLN76 GLY77 PHE78 ALA79 LEU80 VAL81 TYR82 SER83 ILE84 THR85 ALA86 GLN87 SER88 THR89 PHE90 ASN91 ASP92 LEU93 GLN94 ASP95 LEU96 ARG97 GLU98 GLN99 ILE100 LEU101 ARG102 VAL103 LYS104 ASP105 THR106 ASP107 ASP108 VAL109 PRO110 MET111 ILE112 LEU113 VAL114 GLY115 ASN116 LYS117 CYS118 ASP119 LEU120 GLU121 ASP122 GLU123 ARG124 VAL125 VAL126 GLY127 LYS128 GLU129 GLN130 GLY131 GLN132 ASN133 LEU134 ALA135 ARG136 GLN137 TRP138 ASN139 ASN140 CYS141 ALA142 PHE143 LEU144 GLU145 SER146 SER147 ALA148 LYS149 SER150 LYS151 ILE152 ASN153 VAL154 ASN155 GLU156 ILE157 PHE158 TYR159 ASP160 LEU161 VAL162 ARG163 GLN164 ILE165 ASN166 ARG167

Ligands
Unit 5 BEF170 GDP171 MG172

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany