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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HUTP ANTITERMINATION COMPLEX BOUND MRNA
Keywords HUTP, RNA-BINDING, HUTP-RNA COMPLEX, ANTI-TERMINATION, TRANS REGULATION, ACTIVATOR, HISTIDINE METABOLISM, TRANSCRIPTION- COMPLEX, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON P STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3BOY     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA/RNA    D 22 435 0
2  Protein   HUT OPERON POSITIVE REGULATORY PROTEIN  A 147 1131 0
3  Protein   HUT OPERON POSITIVE REGULATORY PROTEIN  B 147 1131 0
4  Protein   HUT OPERON POSITIVE REGULATORY PROTEIN  C 147 1131 0
5  Protein   HUT OPERON POSITIVE REGULATORY PROTEIN  A 4 0 34
6  Ligand   HUT OPERON POSITIVE REGULATORY PROTEIN  B 1 0 1
7  Ligand   HUT OPERON POSITIVE REGULATORY PROTEIN  C 1 0 1
8 Water     406 0 406
total       875 3828 442

Proteins
Unit 2 THR2 LEU3 HIS4 LYS5 GLU6 ARG7 ARG8 ILE9 GLY10 ARG11 LEU12 SER13 VAL14 LEU15 LEU16 LEU17 LEU18 ASN19 GLU20 ALA21 GLU22 GLU23 SER24 THR25 GLN26 VAL27 GLU28 GLU29 LEU30 GLU31 ARG32 ASP33 GLY34 TRP35 LYS36 VAL37 CYS38 LEU39 GLY40 LYS41 VAL42 GLY43 SER44 MET45 ASP46 ALA47 HIS48 LYS49 VAL50 ILE51 ALA52 ALA53 ILE54 GLU55 THR56 ALA57 SER58 LYS59 LYS60 SER61 GLY62 VAL63 ILE64 GLN65 SER66 GLU67 GLY68 TYR69 ARG70 GLU71 SER72 HIS73 ALA74 LEU75 TYR76 HIS77 ALA78 THR79 MET80 GLU81 ALA82 LEU83 HIS84 GLY85 VAL86 THR87 ARG88 GLY89 GLU90 MET91 LEU92 LEU93 GLY94 SER95 LEU96 LEU97 ARG98 THR99 VAL100 GLY101 LEU102 ARG103 PHE104 ALA105 VAL106 LEU107 ARG108 GLY109 ASN110 PRO111 TYR112 GLU113 SER114 GLU115 ALA116 GLU117 GLY118 ASP119 TRP120 ILE121 ALA122 VAL123 SER124 LEU125 TYR126 GLY127 THR128 ILE129 GLY130 ALA131 PRO132 ILE133 LYS134 GLY135 LEU136 GLU137 HIS138 GLU139 THR140 PHE141 GLY142 VAL143 GLY144 ILE145 ASN146 HIS147 ILE148
Unit 3 THR2 LEU3 HIS4 LYS5 GLU6 ARG7 ARG8 ILE9 GLY10 ARG11 LEU12 SER13 VAL14 LEU15 LEU16 LEU17 LEU18 ASN19 GLU20 ALA21 GLU22 GLU23 SER24 THR25 GLN26 VAL27 GLU28 GLU29 LEU30 GLU31 ARG32 ASP33 GLY34 TRP35 LYS36 VAL37 CYS38 LEU39 GLY40 LYS41 VAL42 GLY43 SER44 MET45 ASP46 ALA47 HIS48 LYS49 VAL50 ILE51 ALA52 ALA53 ILE54 GLU55 THR56 ALA57 SER58 LYS59 LYS60 SER61 GLY62 VAL63 ILE64 GLN65 SER66 GLU67 GLY68 TYR69 ARG70 GLU71 SER72 HIS73 ALA74 LEU75 TYR76 HIS77 ALA78 THR79 MET80 GLU81 ALA82 LEU83 HIS84 GLY85 VAL86 THR87 ARG88 GLY89 GLU90 MET91 LEU92 LEU93 GLY94 SER95 LEU96 LEU97 ARG98 THR99 VAL100 GLY101 LEU102 ARG103 PHE104 ALA105 VAL106 LEU107 ARG108 GLY109 ASN110 PRO111 TYR112 GLU113 SER114 GLU115 ALA116 GLU117 GLY118 ASP119 TRP120 ILE121 ALA122 VAL123 SER124 LEU125 TYR126 GLY127 THR128 ILE129 GLY130 ALA131 PRO132 ILE133 LYS134 GLY135 LEU136 GLU137 HIS138 GLU139 THR140 PHE141 GLY142 VAL143 GLY144 ILE145 ASN146 HIS147 ILE148
Unit 4 THR2 LEU3 HIS4 LYS5 GLU6 ARG7 ARG8 ILE9 GLY10 ARG11 LEU12 SER13 VAL14 LEU15 LEU16 LEU17 LEU18 ASN19 GLU20 ALA21 GLU22 GLU23 SER24 THR25 GLN26 VAL27 GLU28 GLU29 LEU30 GLU31 ARG32 ASP33 GLY34 TRP35 LYS36 VAL37 CYS38 LEU39 GLY40 LYS41 VAL42 GLY43 SER44 MET45 ASP46 ALA47 HIS48 LYS49 VAL50 ILE51 ALA52 ALA53 ILE54 GLU55 THR56 ALA57 SER58 LYS59 LYS60 SER61 GLY62 VAL63 ILE64 GLN65 SER66 GLU67 GLY68 TYR69 ARG70 GLU71 SER72 HIS73 ALA74 LEU75 TYR76 HIS77 ALA78 THR79 MET80 GLU81 ALA82 LEU83 HIS84 GLY85 VAL86 THR87 ARG88 GLY89 GLU90 MET91 LEU92 LEU93 GLY94 SER95 LEU96 LEU97 ARG98 THR99 VAL100 GLY101 LEU102 ARG103 PHE104 ALA105 VAL106 LEU107 ARG108 GLY109 ASN110 PRO111 TYR112 GLU113 SER114 GLU115 ALA116 GLU117 GLY118 ASP119 TRP120 ILE121 ALA122 VAL123 SER124 LEU125 TYR126 GLY127 THR128 ILE129 GLY130 ALA131 PRO132 ILE133 LYS134 GLY135 LEU136 GLU137 HIS138 GLU139 THR140 PHE141 GLY142 VAL143 GLY144 ILE145 ASN146 HIS147 ILE148
Unit 5 HIS1001 HIS2001 MG2002 HIS3001

Nucleic acids
Unit 1 U1 U2 U3 A4 G5 U6 U7 U8 U9 U10 A11 G12 U13 U14 U15 U16 U17 A18 G19 U20 U21 U22

Ligands
Unit 6 MG3002
Unit 7 MG1002

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany