Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title A RELAXED ACTIVE SITE FOLLOWING EXON LIGATION BY A GROUP I I
Keywords GROUP I INTRON, AZOARCUS, RIBOZYME, LIGATION, ACETYLATION, M PROCESSING, MRNA SPLICING, NUCLEUS, RIBONUCLEOPROTEIN, RNA- SPLICEOSOME, NUCLEAR PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3BO4     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    B 197 4184 57
2  RNA    C 16 338 0
3  RNA    D 9 187 0
4  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  A 95 775 0
5  Ligand   GROUP I INTRON P9  B 18 0 18
6 Water     33 0 33
total       368 5484 108

Proteins
Unit 4 PRO4 GLU5 THR6 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93 ILE94 ALA95 LYS96 MET97 LYS98

Nucleic acids
Unit 1 GTP4 G5 C6 C7 G8 U9 G10 U11 G12 C13 C14 U15 U16 G17 C18 G19 C20 C21 G22 G23 G24 A25 A26 A27 C28 C29 A30 C31 G32 C33 A34 A35 G36 G37 G38 A39 U40 G41 G42 U43 G44 U45 C46 A47 A48 A49 U50 U51 C52 G53 G54 C55 G56 A57 A58 A59 C60 C61 U62 A63 A64 G65 C66 G67 C68 C69 C70 G71 C72 C73 C74 G75 G76 G77 C78 G79 U80 A81 U82 G83 G84 C85 A86 A87 C88 G89 C90 C91 G92 A93 G94 C95 C96 A97 A98 G99 C100 U101 U102 C103 G104 C105 A106 G107 C112 U113 G114 C115 G116 A117 U118 G119 A120 A121 G122 G123 U124 G125 U126 A127 G128 A129 G130 A131 C132 U133 A134 G135 A136 C137 G138 G139 C140 A141 C142 C143 C144 A145 C146 C147 U148 A149 A150 G151 G152 C153 A154 A155 A156 C157 G158 C159 U160 A161 U162 G163 G164 U165 G166 A167 A168 G169 G170 C171 A172 U173 A174 G175 U176 C177 C178 A179 G180 G181 G182 A183 G184 U185 G186 G187 C188 G189 A23190 C1001 C1002 A1003 U1004 U1005 G1006 C1007 A1008 C1009 U1010 C1011 C1012 G1013 G1014
Unit 2 A191 A192 G193 C194 C195 A196 C197 A198 C199 A200 A201 A202 C203 C204 A205 DG206
Unit 3 C1 A2 DT3 A4 C5 G6 G7 C8 C9

Ligands
Unit 5 MG1 MG2 MG3 K1015 K1016 K1017 MG1018 MG1019 MG1020 MG1021 MG1022 MG1023 MG1024 MG1025 K1026 MG1027 K1028 K1029

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany