3BIM - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE BCL6 BTB DOMAIN DIMER IN COMPLEX WI BCOR BBD COREPRESSOR PEPTIDE
• Keywords: PROTEIN-PEPTIDE COMPEX, ACTIVATOR, CHROMOSOMAL REARRANGEMENT BINDING, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHI PROTO-ONCOGENE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REG ZINC, ZINC-FINGER, ALTERNATIVE SPLICING, ANK REPEAT, CHROMA REGULATOR, DISEASE MUTATION, TRANSCRIPTION REPRESSOR
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3BIM	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	B-CELL LYMPHOMA 6 PROTEIN	A	125	1008	0
2	Protein	BCL-6 COREPRESSOR	I	17	126	0
3	Protein	B-CELL LYMPHOMA 6 PROTEIN	B	124	998	0
4	Protein	BCL-6 COREPRESSOR	J	17	126	0
5	Protein	B-CELL LYMPHOMA 6 PROTEIN	C	125	1008	0
6	Protein	BCL-6 COREPRESSOR	K	17	126	0
7	Protein	B-CELL LYMPHOMA 6 PROTEIN	D	124	998	0
8	Protein	BCL-6 COREPRESSOR	L	16	115	0
9	Protein	B-CELL LYMPHOMA 6 PROTEIN	E	123	993	0
10	Protein	BCL-6 COREPRESSOR	M	17	126	0
11	Protein	B-CELL LYMPHOMA 6 PROTEIN	F	122	987	0
12	Protein	BCL-6 COREPRESSOR	N	16	115	0
13	Protein	B-CELL LYMPHOMA 6 PROTEIN	G	122	985	0
14	Protein	BCL-6 COREPRESSOR	O	17	126	0
15	Protein	B-CELL LYMPHOMA 6 PROTEIN	H	122	987	0
16	Protein	BCL-6 COREPRESSOR	P	17	126	0
17	Water			141	0	141
total				1262	8950	141

Proteins

Unit 1	ALA 5 ASP 6 SER 7 GLN 8 ILE 9 GLN 10 PHE 11 THR 12 ARG 13 HIS 14 ALA 15 SER 16 ASP 17 VAL 18 LEU 19 LEU 20 ASN 21 LEU 22 ASN 23 ARG 24 LEU 25 ARG 26 SER 27 ARG 28 ASP 29 ILE 30 LEU 31 THR 32 ASP 33 VAL 34 VAL 35 ILE 36 VAL 37 VAL 38 SER 39 ARG 40 GLU 41 GLN 42 PHE 43 ARG 44 ALA 45 HIS 46 LYS 47 THR 48 VAL 49 LEU 50 MET 51 ALA 52 CYS 53 SER 54 GLY 55 LEU 56 PHE 57 TYR 58 SER 59 ILE 60 PHE 61 THR 62 ASP 63 GLN 64 LEU 65 LYS 66 ARG 67 ASN 68 LEU 69 SER 70 VAL 71 ILE 72 ASN 73 LEU 74 ASP 75 PRO 76 GLU 77 ILE 78 ASN 79 PRO 80 GLU 81 GLY 82 PHE 83 ASN 84 ILE 85 LEU 86 LEU 87 ASP 88 PHE 89 MET 90 TYR 91 THR 92 SER 93 ARG 94 LEU 95 ASN 96 LEU 97 ARG 98 GLU 99 GLY 100 ASN 101 ILE 102 MET 103 ALA 104 VAL 105 MET 106 ALA 107 THR 108 ALA 109 MET 110 TYR 111 LEU 112 GLN 113 MET 114 GLU 115 HIS 116 VAL 117 VAL 118 ASP 119 THR 120 CYS 121 ARG 122 LYS 123 PHE 124 ILE 125 LYS 126 ALA 127 SER 128 GLU 129
Unit 2	ARG 498 SER 499 GLU 500 ILE 501 ILE 502 SER 503 THR 504 ALA 505 PRO 506 SER 507 SER 508 TRP 509 VAL 510 VAL 511 PRO 512 GLY 513 PRO 514
Unit 3	ALA 5 ASP 6 SER 7 GLN 8 ILE 9 GLN 10 PHE 11 THR 12 ARG 13 HIS 14 ALA 15 SER 16 ASP 17 VAL 18 LEU 19 LEU 20 ASN 21 LEU 22 ASN 23 ARG 24 LEU 25 ARG 26 SER 27 ARG 28 ASP 29 ILE 30 LEU 31 THR 32 ASP 33 VAL 34 VAL 35 ILE 36 VAL 37 VAL 38 SER 39 ARG 40 GLU 41 GLN 42 PHE 43 ARG 44 ALA 45 HIS 46 LYS 47 THR 48 VAL 49 LEU 50 MET 51 ALA 52 CYS 53 SER 54 GLY 55 LEU 56 PHE 57 TYR 58 SER 59 ILE 60 PHE 61 THR 62 ASP 63 GLN 64 LEU 65 LYS 66 ARG 67 ASN 68 LEU 69 SER 70 VAL 71 ILE 72 ASN 73 LEU 74 ASP 75 PRO 76 GLU 77 ILE 78 ASN 79 PRO 80 GLU 81 GLY 82 PHE 83 ASN 84 ILE 85 LEU 86 LEU 87 ASP 88 PHE 89 MET 90 TYR 91 THR 92 SER 93 ARG 94 LEU 95 ASN 96 LEU 97 ARG 98 GLU 99 GLY 100 ASN 101 ILE 102 MET 103 ALA 104 VAL 105 MET 106 ALA 107 THR 108 ALA 109 MET 110 TYR 111 LEU 112 GLN 113 MET 114 GLU 115 HIS 116 VAL 117 VAL 118 ASP 119 THR 120 CYS 121 ARG 122 LYS 123 PHE 124 ILE 125 LYS 126 ALA 127 SER 128
Unit 4	ARG 498 SER 499 GLU 500 ILE 501 ILE 502 SER 503 THR 504 ALA 505 PRO 506 SER 507 SER 508 TRP 509 VAL 510 VAL 511 PRO 512 GLY 513 PRO 514
Unit 5	ALA 5 ASP 6 SER 7 GLN 8 ILE 9 GLN 10 PHE 11 THR 12 ARG 13 HIS 14 ALA 15 SER 16 ASP 17 VAL 18 LEU 19 LEU 20 ASN 21 LEU 22 ASN 23 ARG 24 LEU 25 ARG 26 SER 27 ARG 28 ASP 29 ILE 30 LEU 31 THR 32 ASP 33 VAL 34 VAL 35 ILE 36 VAL 37 VAL 38 SER 39 ARG 40 GLU 41 GLN 42 PHE 43 ARG 44 ALA 45 HIS 46 LYS 47 THR 48 VAL 49 LEU 50 MET 51 ALA 52 CYS 53 SER 54 GLY 55 LEU 56 PHE 57 TYR 58 SER 59 ILE 60 PHE 61 THR 62 ASP 63 GLN 64 LEU 65 LYS 66 ARG 67 ASN 68 LEU 69 SER 70 VAL 71 ILE 72 ASN 73 LEU 74 ASP 75 PRO 76 GLU 77 ILE 78 ASN 79 PRO 80 GLU 81 GLY 82 PHE 83 ASN 84 ILE 85 LEU 86 LEU 87 ASP 88 PHE 89 MET 90 TYR 91 THR 92 SER 93 ARG 94 LEU 95 ASN 96 LEU 97 ARG 98 GLU 99 GLY 100 ASN 101 ILE 102 MET 103 ALA 104 VAL 105 MET 106 ALA 107 THR 108 ALA 109 MET 110 TYR 111 LEU 112 GLN 113 MET 114 GLU 115 HIS 116 VAL 117 VAL 118 ASP 119 THR 120 CYS 121 ARG 122 LYS 123 PHE 124 ILE 125 LYS 126 ALA 127 SER 128 GLU 129
Unit 6	ARG 498 SER 499 GLU 500 ILE 501 ILE 502 SER 503 THR 504 ALA 505 PRO 506 SER 507 SER 508 TRP 509 VAL 510 VAL 511 PRO 512 GLY 513 PRO 514
Unit 7	ALA 5 ASP 6 SER 7 GLN 8 ILE 9 GLN 10 PHE 11 THR 12 ARG 13 HIS 14 ALA 15 SER 16 ASP 17 VAL 18 LEU 19 LEU 20 ASN 21 LEU 22 ASN 23 ARG 24 LEU 25 ARG 26 SER 27 ARG 28 ASP 29 ILE 30 LEU 31 THR 32 ASP 33 VAL 34 VAL 35 ILE 36 VAL 37 VAL 38 SER 39 ARG 40 GLU 41 GLN 42 PHE 43 ARG 44 ALA 45 HIS 46 LYS 47 THR 48 VAL 49 LEU 50 MET 51 ALA 52 CYS 53 SER 54 GLY 55 LEU 56 PHE 57 TYR 58 SER 59 ILE 60 PHE 61 THR 62 ASP 63 GLN 64 LEU 65 LYS 66 ARG 67 ASN 68 LEU 69 SER 70 VAL 71 ILE 72 ASN 73 LEU 74 ASP 75 PRO 76 GLU 77 ILE 78 ASN 79 PRO 80 GLU 81 GLY 82 PHE 83 ASN 84 ILE 85 LEU 86 LEU 87 ASP 88 PHE 89 MET 90 TYR 91 THR 92 SER 93 ARG 94 LEU 95 ASN 96 LEU 97 ARG 98 GLU 99 GLY 100 ASN 101 ILE 102 MET 103 ALA 104 VAL 105 MET 106 ALA 107 THR 108 ALA 109 MET 110 TYR 111 LEU 112 GLN 113 MET 114 GLU 115 HIS 116 VAL 117 VAL 118 ASP 119 THR 120 CYS 121 ARG 122 LYS 123 PHE 124 ILE 125 LYS 126 ALA 127 SER 128
Unit 8	SER 499 GLU 500 ILE 501 ILE 502 SER 503 THR 504 ALA 505 PRO 506 SER 507 SER 508 TRP 509 VAL 510 VAL 511 PRO 512 GLY 513 PRO 514
Unit 9	ASP 6 SER 7 GLN 8 ILE 9 GLN 10 PHE 11 THR 12 ARG 13 HIS 14 ALA 15 SER 16 ASP 17 VAL 18 LEU 19 LEU 20 ASN 21 LEU 22 ASN 23 ARG 24 LEU 25 ARG 26 SER 27 ARG 28 ASP 29 ILE 30 LEU 31 THR 32 ASP 33 VAL 34 VAL 35 ILE 36 VAL 37 VAL 38 SER 39 ARG 40 GLU 41 GLN 42 PHE 43 ARG 44 ALA 45 HIS 46 LYS 47 THR 48 VAL 49 LEU 50 MET 51 ALA 52 CYS 53 SER 54 GLY 55 LEU 56 PHE 57 TYR 58 SER 59 ILE 60 PHE 61 THR 62 ASP 63 GLN 64 LEU 65 LYS 66 ARG 67 ASN 68 LEU 69 SER 70 VAL 71 ILE 72 ASN 73 LEU 74 ASP 75 PRO 76 GLU 77 ILE 78 ASN 79 PRO 80 GLU 81 GLY 82 PHE 83 ASN 84 ILE 85 LEU 86 LEU 87 ASP 88 PHE 89 MET 90 TYR 91 THR 92 SER 93 ARG 94 LEU 95 ASN 96 LEU 97 ARG 98 GLU 99 GLY 100 ASN 101 ILE 102 MET 103 ALA 104 VAL 105 MET 106 ALA 107 THR 108 ALA 109 MET 110 TYR 111 LEU 112 GLN 113 MET 114 GLU 115 HIS 116 VAL 117 VAL 118 ASP 119 THR 120 CYS 121 ARG 122 LYS 123 PHE 124 ILE 125 LYS 126 ALA 127 SER 128
Unit 10	ARG 498 SER 499 GLU 500 ILE 501 ILE 502 SER 503 THR 504 ALA 505 PRO 506 SER 507 SER 508 TRP 509 VAL 510 VAL 511 PRO 512 GLY 513 PRO 514
Unit 11	ALA 5 ASP 6 SER 7 GLN 8 ILE 9 GLN 10 PHE 11 THR 12 ARG 13 HIS 14 ALA 15 SER 16 ASP 17 VAL 18 LEU 19 LEU 20 ASN 21 LEU 22 ASN 23 ARG 24 LEU 25 ARG 26 SER 27 ARG 28 ASP 29 ILE 30 LEU 31 THR 32 ASP 33 VAL 34 VAL 35 ILE 36 VAL 37 VAL 38 SER 39 ARG 40 GLU 41 GLN 42 PHE 43 ARG 44 ALA 45 HIS 46 LYS 47 THR 48 VAL 49 LEU 50 MET 51 ALA 52 CYS 53 SER 54 GLY 55 LEU 56 PHE 57 TYR 58 SER 59 ILE 60 PHE 61 THR 62 ASP 63 GLN 64 LEU 65 LYS 66 ARG 67 ASN 68 LEU 69 SER 70 VAL 71 ILE 72 ASN 73 LEU 74 ASP 75 PRO 76 GLU 77 ILE 78 ASN 79 PRO 80 GLU 81 GLY 82 PHE 83 ASN 84 ILE 85 LEU 86 LEU 87 ASP 88 PHE 89 MET 90 TYR 91 THR 92 SER 93 ARG 94 LEU 95 ASN 96 LEU 97 ARG 98 GLU 99 GLY 100 ASN 101 ILE 102 MET 103 ALA 104 VAL 105 MET 106 ALA 107 THR 108 ALA 109 MET 110 TYR 111 LEU 112 GLN 113 MET 114 GLU 115 HIS 116 VAL 117 VAL 118 ASP 119 THR 120 CYS 121 ARG 122 LYS 123 PHE 124 ILE 125 LYS 126
Unit 12	SER 499 GLU 500 ILE 501 ILE 502 SER 503 THR 504 ALA 505 PRO 506 SER 507 SER 508 TRP 509 VAL 510 VAL 511 PRO 512 GLY 513 PRO 514
Unit 13	SER 7 GLN 8 ILE 9 GLN 10 PHE 11 THR 12 ARG 13 HIS 14 ALA 15 SER 16 ASP 17 VAL 18 LEU 19 LEU 20 ASN 21 LEU 22 ASN 23 ARG 24 LEU 25 ARG 26 SER 27 ARG 28 ASP 29 ILE 30 LEU 31 THR 32 ASP 33 VAL 34 VAL 35 ILE 36 VAL 37 VAL 38 SER 39 ARG 40 GLU 41 GLN 42 PHE 43 ARG 44 ALA 45 HIS 46 LYS 47 THR 48 VAL 49 LEU 50 MET 51 ALA 52 CYS 53 SER 54 GLY 55 LEU 56 PHE 57 TYR 58 SER 59 ILE 60 PHE 61 THR 62 ASP 63 GLN 64 LEU 65 LYS 66 ARG 67 ASN 68 LEU 69 SER 70 VAL 71 ILE 72 ASN 73 LEU 74 ASP 75 PRO 76 GLU 77 ILE 78 ASN 79 PRO 80 GLU 81 GLY 82 PHE 83 ASN 84 ILE 85 LEU 86 LEU 87 ASP 88 PHE 89 MET 90 TYR 91 THR 92 SER 93 ARG 94 LEU 95 ASN 96 LEU 97 ARG 98 GLU 99 GLY 100 ASN 101 ILE 102 MET 103 ALA 104 VAL 105 MET 106 ALA 107 THR 108 ALA 109 MET 110 TYR 111 LEU 112 GLN 113 MET 114 GLU 115 HIS 116 VAL 117 VAL 118 ASP 119 THR 120 CYS 121 ARG 122 LYS 123 PHE 124 ILE 125 LYS 126 ALA 127 SER 128
Unit 14	ARG 498 SER 499 GLU 500 ILE 501 ILE 502 SER 503 THR 504 ALA 505 PRO 506 SER 507 SER 508 TRP 509 VAL 510 VAL 511 PRO 512 GLY 513 PRO 514
Unit 15	ASP 6 SER 7 GLN 8 ILE 9 GLN 10 PHE 11 THR 12 ARG 13 HIS 14 ALA 15 SER 16 ASP 17 VAL 18 LEU 19 LEU 20 ASN 21 LEU 22 ASN 23 ARG 24 LEU 25 ARG 26 SER 27 ARG 28 ASP 29 ILE 30 LEU 31 THR 32 ASP 33 VAL 34 VAL 35 ILE 36 VAL 37 VAL 38 SER 39 ARG 40 GLU 41 GLN 42 PHE 43 ARG 44 ALA 45 HIS 46 LYS 47 THR 48 VAL 49 LEU 50 MET 51 ALA 52 CYS 53 SER 54 GLY 55 LEU 56 PHE 57 TYR 58 SER 59 ILE 60 PHE 61 THR 62 ASP 63 GLN 64 LEU 65 LYS 66 ARG 67 ASN 68 LEU 69 SER 70 VAL 71 ILE 72 ASN 73 LEU 74 ASP 75 PRO 76 GLU 77 ILE 78 ASN 79 PRO 80 GLU 81 GLY 82 PHE 83 ASN 84 ILE 85 LEU 86 LEU 87 ASP 88 PHE 89 MET 90 TYR 91 THR 92 SER 93 ARG 94 LEU 95 ASN 96 LEU 97 ARG 98 GLU 99 GLY 100 ASN 101 ILE 102 MET 103 ALA 104 VAL 105 MET 106 ALA 107 THR 108 ALA 109 MET 110 TYR 111 LEU 112 GLN 113 MET 114 GLU 115 HIS 116 VAL 117 VAL 118 ASP 119 THR 120 CYS 121 ARG 122 LYS 123 PHE 124 ILE 125 LYS 126 ALA 127
Unit 16	ARG 498 SER 499 GLU 500 ILE 501 ILE 502 SER 503 THR 504 ALA 505 PRO 506 SER 507 SER 508 TRP 509 VAL 510 VAL 511 PRO 512 GLY 513 PRO 514