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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ESCHERICHIA COLI SIGNAL PEPTIDE PEPTIDA NATIVE CRYSTALS
Keywords PROTEASE, BACTERIAL, HYDROLASE, INNER MEMBRANE, MEMBRANE, TRANSMEMBRANE, SER/LYS PROTEASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3BF0     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEASE 4  A 474 3587 0
2  Protein   PROTEASE 4  B 474 3583 0
3  Protein   PROTEASE 4  C 478 3606 0
4  Protein   PROTEASE 4  D 476 3601 0
5 Water     488 0 488
total       2390 14377 488
Proteins
Unit 1 ARG56 GLY57 ALA58 LEU59 LEU60 LEU61 ASP62 ILE63 SER64 GLY65 VAL66 ILE67 VAL68 ASP69 LYS70 PRO71 LEU92 GLN93 GLU94 ASN95 SER96 LEU97 PHE98 ASP99 ILE100 VAL101 ASN102 THR103 ILE104 ARG105 GLN106 ALA107 LYS108 ASP109 ASP110 ARG111 ASN112 ILE113 THR114 GLY115 ILE116 VAL117 MET118 ASP119 LEU120 LYS121 ASN122 PHE123 ALA124 GLY125 GLY126 ASP127 GLN128 PRO129 SER130 MET131 GLN132 TYR133 ILE134 GLY135 LYS136 ALA137 LEU138 LYS139 GLU140 PHE141 ARG142 ASP143 SER144 GLY145 LYS146 PRO147 VAL148 TYR149 ALA150 VAL151 GLY152 GLU153 ASN154 TYR155 SER156 GLN157 GLY158 GLN159 TYR160 TYR161 LEU162 ALA163 SER164 PHE165 ALA166 ASN167 LYS168 ILE169 TRP170 LEU171 SER172 PRO173 GLN174 GLY175 VAL176 VAL177 ASP178 LEU179 HIS180 GLY181 PHE182 ALA183 THR184 ASN185 GLY186 LEU187 TYR188 TYR189 LYS190 SER191 LEU192 LEU193 ASP194 LYS195 LEU196 LYS197 VAL198 SER199 THR200 HIS201 VAL202 PHE203 ARG204 VAL205 GLY206 THR207 TYR208 LYS209 SER210 ALA211 VAL212 GLU213 PRO214 PHE215 ILE216 ARG217 ASP218 ASP219 MET220 SER221 PRO222 ALA223 ALA224 ARG225 GLU226 ALA227 ASP228 SER229 ARG230 TRP231 ILE232 GLY233 GLU234 LEU235 TRP236 GLN237 ASN238 TYR239 LEU240 ASN241 THR242 VAL243 ALA244 ALA245 ASN246 ARG247 GLN248 ILE249 PRO250 ALA251 GLU252 GLN253 VAL254 PHE255 PRO256 GLY257 ALA258 GLN259 GLY260 LEU261 LEU262 GLU263 GLY264 LEU265 THR266 LYS267 THR268 GLY269 GLY270 ASP271 THR272 ALA273 LYS274 TYR275 ALA276 LEU277 GLU278 ASN279 LYS280 LEU281 VAL282 ASP283 ALA284 LEU285 ALA286 SER287 SER288 ALA289 GLU290 ILE291 GLU292 LYS293 ALA294 LEU295 THR296 LYS297 GLU298 PHE299 GLY300 TRP301 SER302 LYS303 THR304 ASP305 LYS306 ASN307 TYR308 ARG309 ALA310 ILE311 SER312 TYR313 TYR314 ASP315 TYR316 ALA317 LEU318 LYS319 THR320 PRO321 ALA322 ASP323 THR324 GLY325 ASP326 SER327 ILE328 GLY329 VAL330 VAL331 PHE332 ALA333 ASN334 GLY335 ALA336 ILE337 MET338 ASP339 GLY340 GLU341 GLU342 THR343 GLN344 GLY345 ASN346 VAL347 GLY348 GLY349 ASP350 THR351 THR352 ALA353 ALA354 GLN355 ILE356 ARG357 ASP358 ALA359 ARG360 LEU361 ASP362 PRO363 LYS364 VAL365 LYS366 ALA367 ILE368 VAL369 LEU370 ARG371 VAL372 ASN373 SER374 PRO375 GLY376 GLY377 SER378 VAL379 THR380 ALA381 SER382 GLU383 VAL384 ILE385 ARG386 ALA387 GLU388 LEU389 ALA390 ALA391 ALA392 ARG393 ALA394 ALA395 GLY396 LYS397 PRO398 VAL399 VAL400 VAL401 SER402 MET403 GLY404 GLY405 MET406 ALA407 ALA408 SER409 GLY410 GLY411 TYR412 TRP413 ILE414 SER415 THR416 PRO417 ALA418 ASN419 TYR420 ILE421 VAL422 ALA423 ASN424 PRO425 SER426 THR427 LEU428 THR429 GLY430 SER431 ILE432 GLY433 ILE434 PHE435 GLY436 VAL437 ILE438 THR439 THR440 VAL441 GLU442 ASN443 SER444 LEU445 ASP446 SER447 ILE448 GLY449 VAL450 HIS451 THR452 ASP453 GLY454 VAL455 SER456 THR457 SER458 PRO459 LEU460 ALA461 ASP462 VAL463 SER464 ILE465 THR466 ARG467 ALA468 LEU469 PRO470 PRO471 GLU472 ALA473 GLN474 LEU475 MET476 MET477 GLN478 LEU479 SER480 ILE481 GLU482 ASN483 GLY484 TYR485 LYS486 ARG487 PHE488 ILE489 THR490 LEU491 VAL492 ALA493 ASP494 ALA495 ARG496 HIS497 SER498 THR499 PRO500 GLU501 GLN502 ILE503 ASP504 LYS505 ILE506 ALA507 GLN508 GLY509 HIS510 VAL511 TRP512 THR513 GLY514 GLN515 ASP516 ALA517 LYS518 ALA519 ASN520 GLY521 LEU522 VAL523 ASP524 SER525 LEU526 GLY527 ASP528 PHE529 ASP530 ASP531 ALA532 VAL533 ALA534 LYS535 ALA536 ALA537 GLU538 LEU539 ALA540 LYS541 VAL542 LYS543 GLN544 TRP545 HIS546 LEU547 GLU548 TYR549
Unit 2 ARG56 GLY57 ALA58 LEU59 LEU60 LEU61 ASP62 ILE63 SER64 GLY65 VAL66 ILE67 VAL68 ASP69 LYS70 PRO71 ASP72 GLN93 GLU94 ASN95 SER96 LEU97 PHE98 ASP99 ILE100 VAL101 ASN102 THR103 ILE104 ARG105 GLN106 ALA107 LYS108 ASP109 ASP110 ARG111 ASN112 ILE113 THR114 GLY115 ILE116 VAL117 MET118 ASP119 LEU120 LYS121 ASN122 PHE123 ALA124 GLY125 GLY126 ASP127 GLN128 PRO129 SER130 MET131 GLN132 TYR133 ILE134 GLY135 LYS136 ALA137 LEU138 LYS139 GLU140 PHE141 ARG142 ASP143 SER144 GLY145 LYS146 PRO147 VAL148 TYR149 ALA150 VAL151 GLY152 GLU153 ASN154 TYR155 SER156 GLN157 GLY158 GLN159 TYR160 TYR161 LEU162 ALA163 SER164 PHE165 ALA166 ASN167 LYS168 ILE169 TRP170 LEU171 SER172 PRO173 GLN174 GLY175 VAL176 VAL177 ASP178 LEU179 HIS180 GLY181 PHE182 ALA183 THR184 ASN185 GLY186 LEU187 TYR188 TYR189 LYS190 SER191 LEU192 LEU193 ASP194 LYS195 LEU196 LYS197 VAL198 SER199 THR200 HIS201 VAL202 PHE203 ARG204 VAL205 GLY206 THR207 TYR208 LYS209 SER210 ALA211 VAL212 GLU213 PRO214 PHE215 ILE216 ARG217 ASP218 ASP219 MET220 SER221 PRO222 ALA223 ALA224 ARG225 GLU226 ALA227 ASP228 SER229 ARG230 TRP231 ILE232 GLY233 GLU234 LEU235 TRP236 GLN237 ASN238 TYR239 LEU240 ASN241 THR242 VAL243 ALA244 ALA245 ASN246 ARG247 GLN248 ILE249 PRO250 ALA251 GLU252 GLN253 VAL254 PHE255 PRO256 GLY257 ALA258 GLN259 GLY260 LEU261 LEU262 GLU263 GLY264 LEU265 THR266 LYS267 THR268 GLY269 GLY270 ASP271 THR272 ALA273 LYS274 TYR275 ALA276 LEU277 GLU278 ASN279 LYS280 LEU281 VAL282 ASP283 ALA284 LEU285 ALA286 SER287 SER288 ALA289 GLU290 ILE291 GLU292 LYS293 ALA294 LEU295 THR296 LYS297 GLU298 PHE299 GLY300 TRP301 SER302 LYS303 THR304 ASP305 LYS306 ASN307 TYR308 ARG309 ALA310 ILE311 SER312 TYR313 TYR314 ASP315 TYR316 ALA317 LEU318 LYS319 THR320 PRO321 ALA322 ASP323 THR324 GLY325 ASP326 SER327 ILE328 GLY329 VAL330 VAL331 PHE332 ALA333 ASN334 GLY335 ALA336 ILE337 MET338 ASP339 GLY340 GLU341 GLU342 THR343 GLN344 GLY345 ASN346 VAL347 GLY348 GLY349 ASP350 THR351 THR352 ALA353 ALA354 GLN355 ILE356 ARG357 ASP358 ALA359 ARG360 LEU361 ASP362 PRO363 LYS364 VAL365 LYS366 ALA367 ILE368 VAL369 LEU370 ARG371 VAL372 ASN373 SER374 PRO375 GLY376 GLY377 SER378 VAL379 THR380 ALA381 SER382 GLU383 VAL384 ILE385 ARG386 ALA387 GLU388 LEU389 ALA390 ALA391 ALA392 ARG393 ALA394 ALA395 GLY396 LYS397 PRO398 VAL399 VAL400 VAL401 SER402 MET403 GLY404 GLY405 MET406 ALA407 ALA408 SER409 GLY410 GLY411 TYR412 TRP413 ILE414 SER415 THR416 PRO417 ALA418 ASN419 TYR420 ILE421 VAL422 ALA423 ASN424 PRO425 SER426 THR427 LEU428 THR429 GLY430 SER431 ILE432 GLY433 ILE434 PHE435 GLY436 VAL437 ILE438 THR439 THR440 VAL441 GLU442 ASN443 SER444 LEU445 ASP446 SER447 ILE448 GLY449 VAL450 HIS451 THR452 ASP453 GLY454 VAL455 SER456 THR457 SER458 PRO459 LEU460 ALA461 ASP462 VAL463 SER464 ILE465 THR466 ARG467 ALA468 LEU469 PRO470 PRO471 GLU472 ALA473 GLN474 LEU475 MET476 MET477 GLN478 LEU479 SER480 ILE481 GLU482 ASN483 GLY484 TYR485 LYS486 ARG487 PHE488 ILE489 THR490 LEU491 VAL492 ALA493 ASP494 ALA495 ARG496 HIS497 SER498 THR499 PRO500 GLU501 GLN502 ILE503 ASP504 LYS505 ILE506 ALA507 GLN508 GLY509 HIS510 VAL511 TRP512 THR513 GLY514 GLN515 ASP516 ALA517 LYS518 ALA519 ASN520 GLY521 LEU522 VAL523 ASP524 SER525 LEU526 GLY527 ASP528 PHE529 ASP530 ASP531 ALA532 VAL533 ALA534 LYS535 ALA536 ALA537 GLU538 LEU539 ALA540 LYS541 VAL542 LYS543 GLN544 TRP545 HIS546 LEU547 GLU548 TYR549
Unit 3 ARG56 GLY57 ALA58 LEU59 LEU60 LEU61 ASP62 ILE63 SER64 GLY65 VAL66 ILE67 VAL68 ASP69 LYS70 PRO71 ASP72 ARG91 LEU92 GLN93 GLU94 ASN95 SER96 LEU97 PHE98 ASP99 ILE100 VAL101 ASN102 THR103 ILE104 ARG105 GLN106 ALA107 LYS108 ASP109 ASP110 ARG111 ASN112 ILE113 THR114 GLY115 ILE116 VAL117 MET118 ASP119 LEU120 LYS121 ASN122 PHE123 ALA124 GLY125 GLY126 ASP127 GLN128 PRO129 SER130 MET131 GLN132 TYR133 ILE134 GLY135 LYS136 ALA137 LEU138 LYS139 GLU140 PHE141 ARG142 ASP143 SER144 GLY145 LYS146 PRO147 VAL148 TYR149 ALA150 VAL151 GLY152 GLU153 ASN154 TYR155 SER156 GLN157 GLY158 GLN159 TYR160 TYR161 LEU162 ALA163 SER164 PHE165 ALA166 ASN167 LYS168 ILE169 TRP170 LEU171 SER172 PRO173 GLN174 GLY175 VAL176 VAL177 ASP178 LEU179 HIS180 GLY181 PHE182 ALA183 THR184 ASN185 GLY186 LEU187 TYR188 TYR189 LYS190 SER191 LEU192 LEU193 ASP194 LYS195 LEU196 LYS197 VAL198 SER199 THR200 HIS201 VAL202 PHE203 ARG204 VAL205 GLY206 THR207 TYR208 LYS209 SER210 ALA211 VAL212 GLU213 PRO214 PHE215 ILE216 ARG217 ASP218 ASP219 MET220 SER221 PRO222 ALA223 ALA224 ARG225 GLU226 ALA227 ASP228 SER229 ARG230 TRP231 ILE232 GLY233 GLU234 LEU235 TRP236 GLN237 ASN238 TYR239 LEU240 ASN241 THR242 VAL243 ALA244 ALA245 ASN246 ARG247 GLN248 ILE249 PRO250 ALA251 GLU252 GLN253 VAL254 PHE255 PRO256 GLY257 ALA258 GLN259 GLY260 LEU261 LEU262 GLU263 GLY264 LEU265 THR266 LYS267 THR268 GLY269 GLY270 ASP271 THR272 ALA273 LYS274 TYR275 ALA276 LEU277 GLU278 ASN279 LYS280 LEU281 VAL282 ASP283 ALA284 LEU285 ALA286 SER287 SER288 ALA289 GLU290 ILE291 GLU292 LYS293 ALA294 LEU295 THR296 LYS297 GLU298 PHE299 GLY300 TRP301 SER302 LYS303 THR304 ASP305 LYS306 ASN307 TYR308 ARG309 ALA310 ILE311 SER312 TYR313 TYR314 ASP315 TYR316 ALA317 LEU318 LYS319 THR320 PRO321 ALA322 ASP323 THR324 GLY325 ASP326 SER327 ILE328 GLY329 VAL330 VAL331 PHE332 ALA333 ASN334 GLY335 ALA336 ILE337 MET338 ASP339 GLY340 GLU341 GLU342 THR343 GLN344 GLY345 ASN346 VAL347 GLY348 GLY349 ASP350 THR351 THR352 ALA353 ALA354 GLN355 ILE356 ARG357 ASP358 ALA359 ARG360 LEU361 ASP362 PRO363 LYS364 VAL365 LYS366 ALA367 ILE368 VAL369 LEU370 ARG371 VAL372 ASN373 SER374 PRO375 GLY376 GLY377 SER378 VAL379 THR380 ALA381 SER382 GLU383 VAL384 ILE385 ARG386 ALA387 GLU388 LEU389 ALA390 ALA391 ALA392 ARG393 ALA394 ALA395 GLY396 LYS397 PRO398 VAL399 VAL400 VAL401 SER402 MET403 GLY404 GLY405 MET406 ALA407 ALA408 SER409 GLY410 GLY411 TYR412 TRP413 ILE414 SER415 THR416 PRO417 ALA418 ASN419 TYR420 ILE421 VAL422 ALA423 ASN424 PRO425 SER426 THR427 LEU428 THR429 GLY430 SER431 ILE432 GLY433 ILE434 PHE435 GLY436 VAL437 ILE438 THR439 THR440 VAL441 GLU442 ASN443 SER444 LEU445 ASP446 SER447 ILE448 GLY449 VAL450 HIS451 THR452 ASP453 GLY454 VAL455 SER456 THR457 SER458 PRO459 LEU460 ALA461 ASP462 VAL463 SER464 ILE465 THR466 ARG467 ALA468 LEU469 PRO470 PRO471 GLU472 ALA473 GLN474 LEU475 MET476 MET477 GLN478 LEU479 SER480 ILE481 GLU482 ASN483 GLY484 TYR485 LYS486 ARG487 PHE488 ILE489 THR490 LEU491 VAL492 ALA493 ASP494 ALA495 ARG496 HIS497 SER498 THR499 PRO500 GLU501 GLN502 ILE503 ASP504 LYS505 ILE506 ALA507 GLN508 GLY509 HIS510 VAL511 TRP512 THR513 GLY514 GLN515 ASP516 ALA517 LYS518 ALA519 ASN520 GLY521 LEU522 VAL523 ASP524 SER525 LEU526 GLY527 ASP528 PHE529 ASP530 ASP531 ALA532 VAL533 ALA534 LYS535 ALA536 ALA537 GLU538 LEU539 ALA540 LYS541 VAL542 LYS543 GLN544 TRP545 HIS546 LEU547 GLU548 TYR549 TYR550 VAL551
Unit 4 ARG56 GLY57 ALA58 LEU59 LEU60 LEU61 ASP62 ILE63 SER64 GLY65 VAL66 ILE67 VAL68 ASP69 LYS70 PRO71 ASP72 SER73 LEU92 GLN93 GLU94 ASN95 SER96 LEU97 PHE98 ASP99 ILE100 VAL101 ASN102 THR103 ILE104 ARG105 GLN106 ALA107 LYS108 ASP109 ASP110 ARG111 ASN112 ILE113 THR114 GLY115 ILE116 VAL117 MET118 ASP119 LEU120 LYS121 ASN122 PHE123 ALA124 GLY125 GLY126 ASP127 GLN128 PRO129 SER130 MET131 GLN132 TYR133 ILE134 GLY135 LYS136 ALA137 LEU138 LYS139 GLU140 PHE141 ARG142 ASP143 SER144 GLY145 LYS146 PRO147 VAL148 TYR149 ALA150 VAL151 GLY152 GLU153 ASN154 TYR155 SER156 GLN157 GLY158 GLN159 TYR160 TYR161 LEU162 ALA163 SER164 PHE165 ALA166 ASN167 LYS168 ILE169 TRP170 LEU171 SER172 PRO173 GLN174 GLY175 VAL176 VAL177 ASP178 LEU179 HIS180 GLY181 PHE182 ALA183 THR184 ASN185 GLY186 LEU187 TYR188 TYR189 LYS190 SER191 LEU192 LEU193 ASP194 LYS195 LEU196 LYS197 VAL198 SER199 THR200 HIS201 VAL202 PHE203 ARG204 VAL205 GLY206 THR207 TYR208 LYS209 SER210 ALA211 VAL212 GLU213 PRO214 PHE215 ILE216 ARG217 ASP218 ASP219 MET220 SER221 PRO222 ALA223 ALA224 ARG225 GLU226 ALA227 ASP228 SER229 ARG230 TRP231 ILE232 GLY233 GLU234 LEU235 TRP236 GLN237 ASN238 TYR239 LEU240 ASN241 THR242 VAL243 ALA244 ALA245 ASN246 ARG247 GLN248 ILE249 PRO250 ALA251 GLU252 GLN253 VAL254 PHE255 PRO256 GLY257 ALA258 GLN259 GLY260 LEU261 LEU262 GLU263 GLY264 LEU265 THR266 LYS267 THR268 GLY269 GLY270 ASP271 THR272 ALA273 LYS274 TYR275 ALA276 LEU277 GLU278 ASN279 LYS280 LEU281 VAL282 ASP283 ALA284 LEU285 ALA286 SER287 SER288 ALA289 GLU290 ILE291 GLU292 LYS293 ALA294 LEU295 THR296 LYS297 GLU298 PHE299 GLY300 TRP301 SER302 LYS303 THR304 ASP305 LYS306 ASN307 TYR308 ARG309 ALA310 ILE311 SER312 TYR313 TYR314 ASP315 TYR316 ALA317 LEU318 LYS319 THR320 PRO321 ALA322 ASP323 THR324 GLY325 ASP326 SER327 ILE328 GLY329 VAL330 VAL331 PHE332 ALA333 ASN334 GLY335 ALA336 ILE337 MET338 ASP339 GLY340 GLU341 GLU342 THR343 GLN344 GLY345 ASN346 VAL347 GLY348 GLY349 ASP350 THR351 THR352 ALA353 ALA354 GLN355 ILE356 ARG357 ASP358 ALA359 ARG360 LEU361 ASP362 PRO363 LYS364 VAL365 LYS366 ALA367 ILE368 VAL369 LEU370 ARG371 VAL372 ASN373 SER374 PRO375 GLY376 GLY377 SER378 VAL379 THR380 ALA381 SER382 GLU383 VAL384 ILE385 ARG386 ALA387 GLU388 LEU389 ALA390 ALA391 ALA392 ARG393 ALA394 ALA395 GLY396 LYS397 PRO398 VAL399 VAL400 VAL401 SER402 MET403 GLY404 GLY405 MET406 ALA407 ALA408 SER409 GLY410 GLY411 TYR412 TRP413 ILE414 SER415 THR416 PRO417 ALA418 ASN419 TYR420 ILE421 VAL422 ALA423 ASN424 PRO425 SER426 THR427 LEU428 THR429 GLY430 SER431 ILE432 GLY433 ILE434 PHE435 GLY436 VAL437 ILE438 THR439 THR440 VAL441 GLU442 ASN443 SER444 LEU445 ASP446 SER447 ILE448 GLY449 VAL450 HIS451 THR452 ASP453 GLY454 VAL455 SER456 THR457 SER458 PRO459 LEU460 ALA461 ASP462 VAL463 SER464 ILE465 THR466 ARG467 ALA468 LEU469 PRO470 PRO471 GLU472 ALA473 GLN474 LEU475 MET476 MET477 GLN478 LEU479 SER480 ILE481 GLU482 ASN483 GLY484 TYR485 LYS486 ARG487 PHE488 ILE489 THR490 LEU491 VAL492 ALA493 ASP494 ALA495 ARG496 HIS497 SER498 THR499 PRO500 GLU501 GLN502 ILE503 ASP504 LYS505 ILE506 ALA507 GLN508 GLY509 HIS510 VAL511 TRP512 THR513 GLY514 GLN515 ASP516 ALA517 LYS518 ALA519 ASN520 GLY521 LEU522 VAL523 ASP524 SER525 LEU526 GLY527 ASP528 PHE529 ASP530 ASP531 ALA532 VAL533 ALA534 LYS535 ALA536 ALA537 GLU538 LEU539 ALA540 LYS541 VAL542 LYS543 GLN544 TRP545 HIS546 LEU547 GLU548 TYR549
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany