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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A SYNAPTIC ADHESION COMPLEX
Keywords SYNAPTIC FORMATION, ADHESION, HETEROPHILIC, PROTEIN-PROTEIN CALCIUM BINDING, MEMBRANE, TRANSMEMBRANE, CELL ADHESION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3B3Q     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NLGN1 PROTEIN  A 536 4219 0
2  Protein   NLGN1 PROTEIN  B 536 4219 0
3  Protein   NRXN1 PROTEIN  E 187 1431 0
4  Protein   NRXN1 PROTEIN  F 187 1431 0
5  Ligand    C 2 0 28
6  Ligand    D 2 0 28
7  Ligand    G 2 0 28
8  Ligand   NLGN1 PROTEIN  A 1 0 14
9  Ligand   NRXN1 PROTEIN  E 1 0 1
10  Ligand   NRXN1 PROTEIN  F 1 0 1
11 Water     1552 0 1552
total       3007 11300 1652
Proteins
Unit 1 ASP52 PRO53 LEU54 VAL55 THR56 THR57 ASN58 PHE59 GLY60 LYS61 ILE62 ARG63 GLY64 ILE65 LYS66 LYS67 GLU68 LEU69 ASN70 ASN71 GLU72 ILE73 LEU74 GLY75 PRO76 VAL77 ILE78 GLN79 PHE80 LEU81 GLY82 VAL83 PRO84 TYR85 ALA86 ALA87 PRO88 PRO89 THR90 GLY91 GLU92 HIS93 ARG94 PHE95 GLN96 PRO97 PRO98 GLU99 PRO100 PRO101 SER102 PRO103 TRP104 SER105 ASP106 ILE107 ARG108 ASN109 ALA110 THR111 GLN112 PHE113 ALA114 PRO115 VAL116 CYS117 PRO118 GLN119 ASN120 ILE121 ILE122 ASP123 GLY124 ARG125 LEU126 PRO127 GLU128 VAL129 MET130 LEU131 PRO132 VAL133 TRP134 PHE135 THR136 ASN137 ASN138 LEU139 ASP140 VAL141 VAL142 SER143 SER144 TYR145 VAL146 GLN147 ASP148 GLN149 SER150 GLU151 ASP152 CYS153 LEU154 TYR155 LEU156 ASN157 ILE158 TYR159 VAL160 PRO161 THR162 GLU163 ASP164 GLY190 GLY191 PRO192 LYS193 PRO194 VAL195 MET196 VAL197 TYR198 ILE199 HIS200 GLY201 GLY202 SER203 TYR204 MET205 GLU206 GLY207 THR208 GLY209 ASN210 LEU211 TYR212 ASP213 GLY214 SER215 VAL216 LEU217 ALA218 SER219 TYR220 GLY221 ASN222 VAL223 ILE224 VAL225 ILE226 THR227 VAL228 ASN229 TYR230 ARG231 LEU232 GLY233 VAL234 LEU235 GLY236 PHE237 LEU238 SER239 THR240 GLY241 ASP242 GLN243 ALA244 ALA245 LYS246 GLY247 ASN248 TYR249 GLY250 LEU251 LEU252 ASP253 LEU254 ILE255 GLN256 ALA257 LEU258 ARG259 TRP260 THR261 SER262 GLU263 ASN264 ILE265 GLY266 PHE267 PHE268 GLY269 GLY270 ASP271 PRO272 LEU273 ARG274 ILE275 THR276 VAL277 PHE278 GLY279 SER280 GLY281 ALA282 GLY283 GLY284 SER285 CYS286 VAL287 ASN288 LEU289 LEU290 THR291 LEU292 SER293 HIS294 TYR295 SER296 GLU297 GLY307 LEU308 PHE309 GLN310 ARG311 ALA312 ILE313 ALA314 GLN315 SER316 GLY317 THR318 ALA319 LEU320 SER321 SER322 TRP323 ALA324 VAL325 SER326 PHE327 GLN328 PRO329 ALA330 LYS331 TYR332 ALA333 ARG334 ILE335 LEU336 ALA337 THR338 LYS339 VAL340 GLY341 CYS342 GLN343 VAL344 SER345 ASP346 THR347 VAL348 GLU349 LEU350 VAL351 GLU352 CYS353 LEU354 GLN355 LYS356 LYS357 PRO358 TYR359 LYS360 GLU361 LEU362 VAL363 ASP364 GLN365 ASP366 VAL367 GLN368 PRO369 ALA370 ARG371 TYR372 HIS373 ILE374 ALA375 PHE376 GLY377 PRO378 VAL379 ILE380 ASP381 GLY382 ASP383 VAL384 ILE385 PRO386 ASP387 ASP388 PRO389 GLN390 ILE391 LEU392 MET393 GLU394 GLN395 GLY396 GLU397 PHE398 LEU399 ASN400 TYR401 ASP402 ILE403 MET404 LEU405 GLY406 VAL407 ASN408 GLN409 GLY410 GLU411 GLY412 LEU413 LYS414 PHE415 VAL416 GLU417 ASN418 ILE419 VAL420 ASP421 SER422 ASP423 ASP424 GLY425 VAL426 SER427 ALA428 SER429 ASP430 PHE431 ASP432 PHE433 ALA434 VAL435 SER436 ASN437 PHE438 VAL439 ASP440 ASN441 LEU442 TYR443 GLY444 TYR445 ASP450 VAL451 LEU452 ARG453 GLU454 THR455 ILE456 LYS457 PHE458 MET459 TYR460 THR461 ASP462 TRP463 ALA464 ASP465 ARG466 HIS467 ASN468 PRO469 GLU470 THR471 ARG472 ARG473 LYS474 THR475 LEU476 LEU477 ALA478 LEU479 PHE480 THR481 ASP482 HIS483 GLN484 TRP485 VAL486 ALA487 PRO488 ALA489 VAL490 ALA491 THR492 ALA493 ASP494 LEU495 HIS496 SER497 ASN498 PHE499 GLY500 SER501 PRO502 THR503 TYR504 PHE505 TYR506 ALA507 PHE508 TYR509 HIS510 HIS511 CYS512 GLN513 THR514 ASP515 GLN516 VAL517 PRO518 ALA519 TRP520 ALA521 ASP522 ALA523 ALA524 HIS525 GLY526 ASP527 GLU528 VAL529 PRO530 TYR531 VAL532 LEU533 GLY534 ILE535 PRO536 MET537 ILE538 GLY539 PRO540 THR541 GLU542 LEU543 PHE544 PRO545 CYS546 ASN547 PHE548 SER549 LYS550 ASN551 ASP552 VAL553 MET554 LEU555 SER556 ALA557 VAL558 VAL559 MET560 THR561 TYR562 TRP563 THR564 ASN565 PHE566 ALA567 LYS568 THR569 GLY570 ASP571 PRO572 ASN573 GLN574 PRO575 VAL576 PRO577 GLN578 ASP579 PHE590 GLU591 GLU592 VAL593 ALA594 TRP595 THR596 ARG597 TYR598 SER599 GLN600 LYS601 ASP602 GLN603 LEU604 TYR605 LEU606 HIS607 ILE608 GLY609 LEU610 LYS611 PRO612 ARG613 VAL614 LYS615 GLU616 HIS617 TYR618 ARG619 ALA620 ASN621 LYS622 VAL623 ASN624 LEU625 TRP626 LEU627 GLU628 LEU629 VAL630 PRO631 HIS632 LEU633 HIS634 ASN635
Unit 2 ASP52 PRO53 LEU54 VAL55 THR56 THR57 ASN58 PHE59 GLY60 LYS61 ILE62 ARG63 GLY64 ILE65 LYS66 LYS67 GLU68 LEU69 ASN70 ASN71 GLU72 ILE73 LEU74 GLY75 PRO76 VAL77 ILE78 GLN79 PHE80 LEU81 GLY82 VAL83 PRO84 TYR85 ALA86 ALA87 PRO88 PRO89 THR90 GLY91 GLU92 HIS93 ARG94 PHE95 GLN96 PRO97 PRO98 GLU99 PRO100 PRO101 SER102 PRO103 TRP104 SER105 ASP106 ILE107 ARG108 ASN109 ALA110 THR111 GLN112 PHE113 ALA114 PRO115 VAL116 CYS117 PRO118 GLN119 ASN120 ILE121 ILE122 ASP123 GLY124 ARG125 LEU126 PRO127 GLU128 VAL129 MET130 LEU131 PRO132 VAL133 TRP134 PHE135 THR136 ASN137 ASN138 LEU139 ASP140 VAL141 VAL142 SER143 SER144 TYR145 VAL146 GLN147 ASP148 GLN149 SER150 GLU151 ASP152 CYS153 LEU154 TYR155 LEU156 ASN157 ILE158 TYR159 VAL160 PRO161 THR162 GLU163 ASP164 GLY190 GLY191 PRO192 LYS193 PRO194 VAL195 MET196 VAL197 TYR198 ILE199 HIS200 GLY201 GLY202 SER203 TYR204 MET205 GLU206 GLY207 THR208 GLY209 ASN210 LEU211 TYR212 ASP213 GLY214 SER215 VAL216 LEU217 ALA218 SER219 TYR220 GLY221 ASN222 VAL223 ILE224 VAL225 ILE226 THR227 VAL228 ASN229 TYR230 ARG231 LEU232 GLY233 VAL234 LEU235 GLY236 PHE237 LEU238 SER239 THR240 GLY241 ASP242 GLN243 ALA244 ALA245 LYS246 GLY247 ASN248 TYR249 GLY250 LEU251 LEU252 ASP253 LEU254 ILE255 GLN256 ALA257 LEU258 ARG259 TRP260 THR261 SER262 GLU263 ASN264 ILE265 GLY266 PHE267 PHE268 GLY269 GLY270 ASP271 PRO272 LEU273 ARG274 ILE275 THR276 VAL277 PHE278 GLY279 SER280 GLY281 ALA282 GLY283 GLY284 SER285 CYS286 VAL287 ASN288 LEU289 LEU290 THR291 LEU292 SER293 HIS294 TYR295 SER296 GLU297 GLY307 LEU308 PHE309 GLN310 ARG311 ALA312 ILE313 ALA314 GLN315 SER316 GLY317 THR318 ALA319 LEU320 SER321 SER322 TRP323 ALA324 VAL325 SER326 PHE327 GLN328 PRO329 ALA330 LYS331 TYR332 ALA333 ARG334 ILE335 LEU336 ALA337 THR338 LYS339 VAL340 GLY341 CYS342 GLN343 VAL344 SER345 ASP346 THR347 VAL348 GLU349 LEU350 VAL351 GLU352 CYS353 LEU354 GLN355 LYS356 LYS357 PRO358 TYR359 LYS360 GLU361 LEU362 VAL363 ASP364 GLN365 ASP366 VAL367 GLN368 PRO369 ALA370 ARG371 TYR372 HIS373 ILE374 ALA375 PHE376 GLY377 PRO378 VAL379 ILE380 ASP381 GLY382 ASP383 VAL384 ILE385 PRO386 ASP387 ASP388 PRO389 GLN390 ILE391 LEU392 MET393 GLU394 GLN395 GLY396 GLU397 PHE398 LEU399 ASN400 TYR401 ASP402 ILE403 MET404 LEU405 GLY406 VAL407 ASN408 GLN409 GLY410 GLU411 GLY412 LEU413 LYS414 PHE415 VAL416 GLU417 ASN418 ILE419 VAL420 ASP421 SER422 ASP423 ASP424 GLY425 VAL426 SER427 ALA428 SER429 ASP430 PHE431 ASP432 PHE433 ALA434 VAL435 SER436 ASN437 PHE438 VAL439 ASP440 ASN441 LEU442 TYR443 GLY444 TYR445 ASP450 VAL451 LEU452 ARG453 GLU454 THR455 ILE456 LYS457 PHE458 MET459 TYR460 THR461 ASP462 TRP463 ALA464 ASP465 ARG466 HIS467 ASN468 PRO469 GLU470 THR471 ARG472 ARG473 LYS474 THR475 LEU476 LEU477 ALA478 LEU479 PHE480 THR481 ASP482 HIS483 GLN484 TRP485 VAL486 ALA487 PRO488 ALA489 VAL490 ALA491 THR492 ALA493 ASP494 LEU495 HIS496 SER497 ASN498 PHE499 GLY500 SER501 PRO502 THR503 TYR504 PHE505 TYR506 ALA507 PHE508 TYR509 HIS510 HIS511 CYS512 GLN513 THR514 ASP515 GLN516 VAL517 PRO518 ALA519 TRP520 ALA521 ASP522 ALA523 ALA524 HIS525 GLY526 ASP527 GLU528 VAL529 PRO530 TYR531 VAL532 LEU533 GLY534 ILE535 PRO536 MET537 ILE538 GLY539 PRO540 THR541 GLU542 LEU543 PHE544 PRO545 CYS546 ASN547 PHE548 SER549 LYS550 ASN551 ASP552 VAL553 MET554 LEU555 SER556 ALA557 VAL558 VAL559 MET560 THR561 TYR562 TRP563 THR564 ASN565 PHE566 ALA567 LYS568 THR569 GLY570 ASP571 PRO572 ASN573 GLN574 PRO575 VAL576 PRO577 GLN578 ASP579 PHE590 GLU591 GLU592 VAL593 ALA594 TRP595 THR596 ARG597 TYR598 SER599 GLN600 LYS601 ASP602 GLN603 LEU604 TYR605 LEU606 HIS607 ILE608 GLY609 LEU610 LYS611 PRO612 ARG613 VAL614 LYS615 GLU616 HIS617 TYR618 ARG619 ALA620 ASN621 LYS622 VAL623 ASN624 LEU625 TRP626 LEU627 GLU628 LEU629 VAL630 PRO631 HIS632 LEU633 HIS634 ASN635
Unit 3 HIS73 SER74 ALA75 PHE76 ALA77 ALA78 ASP79 PRO80 GLY81 HIS82 THR85 THR86 TYR87 ILE88 PHE89 SER90 LYS91 GLY92 GLY93 GLY94 GLN95 ILE96 THR97 TYR98 LYS99 TRP100 PRO101 PRO102 ASN103 ASP104 ARG105 PRO106 SER107 THR108 ARG109 ALA110 ASP111 ARG112 LEU113 ALA114 ILE115 GLY116 PHE117 SER118 THR119 VAL120 GLN121 LYS122 GLU123 ALA124 VAL125 LEU126 VAL127 ARG128 VAL129 ASP130 SER131 SER132 SER133 GLY134 LEU135 GLY136 ASP137 TYR138 LEU139 GLU140 LEU141 HIS142 ILE143 HIS144 GLN145 GLY146 LYS147 ILE148 GLY149 VAL150 LYS151 PHE152 ASN153 VAL154 GLY155 THR156 ASP157 ASP158 ILE159 ALA160 ILE161 GLU162 GLU163 SER164 ASN165 ALA166 ILE167 ILE168 ASN169 ASP170 GLY171 LYS172 TYR173 HIS174 VAL175 VAL176 ARG177 PHE178 THR179 ARG180 SER181 GLY182 GLY183 ASN184 ALA185 THR186 LEU187 GLN188 VAL189 ASP190 SER191 TRP192 PRO193 VAL194 ILE195 GLU196 ARG197 TYR198 PRO199 ALA200 GLY231 ARG232 GLN233 LEU234 THR235 ILE236 PHE237 ASN238 SER239 GLN240 ALA241 THR242 ILE243 ILE244 ILE245 GLY246 GLY247 LYS248 GLU249 GLN250 GLY251 GLN252 PRO253 PHE254 GLN255 GLY256 GLN257 LEU258 SER259 GLY260 LEU261 TYR262 TYR263 ASN264 GLY265 LEU266 LYS267 VAL268 LEU269 ASN270 MET271 ALA272 ALA273 GLU274 ASN275 ASP276 ALA277 ASN278 ILE279 ALA280 ILE281 VAL282 GLY283 ASN284 VAL285 ARG286 LEU287 VAL288 GLY289 GLU290 VAL291
Unit 4 HIS73 SER74 ALA75 PHE76 ALA77 ALA78 ASP79 PRO80 GLY81 HIS82 THR85 THR86 TYR87 ILE88 PHE89 SER90 LYS91 GLY92 GLY93 GLY94 GLN95 ILE96 THR97 TYR98 LYS99 TRP100 PRO101 PRO102 ASN103 ASP104 ARG105 PRO106 SER107 THR108 ARG109 ALA110 ASP111 ARG112 LEU113 ALA114 ILE115 GLY116 PHE117 SER118 THR119 VAL120 GLN121 LYS122 GLU123 ALA124 VAL125 LEU126 VAL127 ARG128 VAL129 ASP130 SER131 SER132 SER133 GLY134 LEU135 GLY136 ASP137 TYR138 LEU139 GLU140 LEU141 HIS142 ILE143 HIS144 GLN145 GLY146 LYS147 ILE148 GLY149 VAL150 LYS151 PHE152 ASN153 VAL154 GLY155 THR156 ASP157 ASP158 ILE159 ALA160 ILE161 GLU162 GLU163 SER164 ASN165 ALA166 ILE167 ILE168 ASN169 ASP170 GLY171 LYS172 TYR173 HIS174 VAL175 VAL176 ARG177 PHE178 THR179 ARG180 SER181 GLY182 GLY183 ASN184 ALA185 THR186 LEU187 GLN188 VAL189 ASP190 SER191 TRP192 PRO193 VAL194 ILE195 GLU196 ARG197 TYR198 PRO199 ALA200 GLY231 ARG232 GLN233 LEU234 THR235 ILE236 PHE237 ASN238 SER239 GLN240 ALA241 THR242 ILE243 ILE244 ILE245 GLY246 GLY247 LYS248 GLU249 GLN250 GLY251 GLN252 PRO253 PHE254 GLN255 GLY256 GLN257 LEU258 SER259 GLY260 LEU261 TYR262 TYR263 ASN264 GLY265 LEU266 LYS267 VAL268 LEU269 ASN270 MET271 ALA272 ALA273 GLU274 ASN275 ASP276 ALA277 ASN278 ILE279 ALA280 ILE281 VAL282 GLY283 ASN284 VAL285 ARG286 LEU287 VAL288 GLY289 GLU290 VAL291
Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG636
Unit 9 CA1
Unit 10 CA2
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany