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Title | CRYSTAL STRUCTURE OF THE BATHO INTERMEDIATE OF SQUID RHODOPS | |
Keywords | TRANSMEMBRANE PROTEIN, PHOTORECEPTOR, CHROMOPHORE, GLYCOPROT LIPOPROTEIN, GQ-TYPE G-PROTEIN, PHOSPHORYLATION, MEMBRANE, PROTEIN | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3AYM | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | RHODOPSIN | A | 350 | 2780 | 0 |
2 | Protein | RHODOPSIN | B | 347 | 2762 | 0 |
3 | Ligand | RHODOPSIN | A | 3 | 0 | 57 |
4 | Ligand | RHODOPSIN | B | 4 | 0 | 84 |
5 | Water | 59 | 0 | 59 | ||
total | 763 | 5542 | 200 |
Unit 1 | GLU9 THR10 TRP11 TRP12 TYR13 ASN14 PRO15 SER16 ILE17 VAL18 VAL19 HIS20 PRO21 HIS22 TRP23 ARG24 GLU25 PHE26 ASP27 GLN28 VAL29 PRO30 ASP31 ALA32 VAL33 TYR34 TYR35 SER36 LEU37 GLY38 ILE39 PHE40 ILE41 GLY42 ILE43 CYS44 GLY45 ILE46 ILE47 GLY48 CYS49 GLY50 GLY51 ASN52 GLY53 ILE54 VAL55 ILE56 TYR57 LEU58 PHE59 THR60 LYS61 THR62 LYS63 SER64 LEU65 GLN66 THR67 PRO68 ALA69 ASN70 MET71 PHE72 ILE73 ILE74 ASN75 LEU76 ALA77 PHE78 SER79 ASP80 PHE81 THR82 PHE83 SER84 LEU85 VAL86 ASN87 GLY88 PHE89 PRO90 LEU91 MET92 THR93 ILE94 SER95 CYS96 PHE97 LEU98 LYS99 LYS100 TRP101 ILE102 PHE103 GLY104 PHE105 ALA106 ALA107 CYS108 LYS109 VAL110 TYR111 GLY112 PHE113 ILE114 GLY115 GLY116 ILE117 PHE118 GLY119 PHE120 MET121 SER122 ILE123 MET124 THR125 MET126 ALA127 MET128 ILE129 SER130 ILE131 ASP132 ARG133 TYR134 ASN135 VAL136 ILE137 GLY138 ARG139 PRO140 MET141 ALA142 ALA143 SER144 LYS145 LYS146 MET147 SER148 HIS149 ARG150 ARG151 ALA152 PHE153 ILE154 MET155 ILE156 ILE157 PHE158 VAL159 TRP160 LEU161 TRP162 SER163 VAL164 LEU165 TRP166 ALA167 ILE168 GLY169 PRO170 ILE171 PHE172 GLY173 TRP174 GLY175 ALA176 TYR177 THR178 LEU179 GLU180 GLY181 VAL182 LEU183 CYS184 ASN185 CYS186 SER187 PHE188 ASP189 TYR190 ILE191 SER192 ARG193 ASP194 SER195 THR196 THR197 ARG198 SER199 ASN200 ILE201 LEU202 CYS203 MET204 PHE205 ILE206 LEU207 GLY208 PHE209 PHE210 GLY211 PRO212 ILE213 LEU214 ILE215 ILE216 PHE217 PHE218 CYS219 TYR220 PHE221 ASN222 ILE223 VAL224 MET225 SER226 VAL227 SER228 ASN229 HIS230 GLU231 LYS232 GLU233 MET234 ALA235 ALA236 MET237 ALA238 LYS239 ARG240 LEU241 ASN242 ALA243 LYS244 GLU245 LEU246 ARG247 LYS248 ALA249 GLN250 ALA251 GLY252 ALA253 ASN254 ALA255 GLU256 MET257 ARG258 LEU259 ALA260 LYS261 ILE262 SER263 ILE264 VAL265 ILE266 VAL267 SER268 GLN269 PHE270 LEU271 LEU272 SER273 TRP274 SER275 PRO276 TYR277 ALA278 VAL279 VAL280 ALA281 LEU282 LEU283 ALA284 GLN285 PHE286 GLY287 PRO288 LEU289 GLU290 TRP291 VAL292 THR293 PRO294 TYR295 ALA296 ALA297 GLN298 LEU299 PRO300 VAL301 MET302 PHE303 ALA304 LYS305 ALA306 SER307 ALA308 ILE309 HIS310 ASN311 PRO312 MET313 ILE314 TYR315 SER316 VAL317 SER318 HIS319 PRO320 LYS321 PHE322 ARG323 GLU324 ALA325 ILE326 SER327 GLN328 THR329 PHE330 PRO331 TRP332 VAL333 LEU334 THR335 CYS336 CYS337 GLN338 PHE339 ASP340 ASP341 LYS342 GLU343 THR344 GLU345 ASP346 ASP347 LYS348 ASP349 ALA350 GLU351 THR352 GLU353 ILE354 PRO355 ALA356 GLY357 GLU358 |
Unit 2 | GLU9 THR10 TRP11 TRP12 TYR13 ASN14 PRO15 SER16 ILE17 VAL18 VAL19 HIS20 PRO21 HIS22 TRP23 ARG24 GLU25 PHE26 ASP27 GLN28 VAL29 PRO30 ASP31 ALA32 VAL33 TYR34 TYR35 SER36 LEU37 GLY38 ILE39 PHE40 ILE41 GLY42 ILE43 CYS44 GLY45 ILE46 ILE47 GLY48 CYS49 GLY50 GLY51 ASN52 GLY53 ILE54 VAL55 ILE56 TYR57 LEU58 PHE59 THR60 LYS61 THR62 LYS63 SER64 LEU65 GLN66 THR67 PRO68 ALA69 ASN70 MET71 PHE72 ILE73 ILE74 ASN75 LEU76 ALA77 PHE78 SER79 ASP80 PHE81 THR82 PHE83 SER84 LEU85 VAL86 ASN87 GLY88 PHE89 PRO90 LEU91 MET92 THR93 ILE94 SER95 CYS96 PHE97 LEU98 LYS99 LYS100 TRP101 ILE102 PHE103 GLY104 PHE105 ALA106 ALA107 CYS108 LYS109 VAL110 TYR111 GLY112 PHE113 ILE114 GLY115 GLY116 ILE117 PHE118 GLY119 PHE120 MET121 SER122 ILE123 MET124 THR125 MET126 ALA127 MET128 ILE129 SER130 ILE131 ASP132 ARG133 TYR134 ASN135 VAL136 ILE137 GLY138 ARG139 PRO140 MET141 ALA142 ALA143 SER144 LYS145 LYS146 MET147 SER148 HIS149 ARG150 ARG151 ALA152 PHE153 ILE154 MET155 ILE156 ILE157 PHE158 VAL159 TRP160 LEU161 TRP162 SER163 VAL164 LEU165 TRP166 ALA167 ILE168 GLY169 PRO170 ILE171 PHE172 GLY173 TRP174 GLY175 ALA176 TYR177 THR178 LEU179 GLU180 GLY181 VAL182 LEU183 CYS184 ASN185 CYS186 SER187 PHE188 ASP189 TYR190 ILE191 SER192 ARG193 ASP194 SER195 THR196 THR197 ARG198 SER199 ASN200 ILE201 LEU202 CYS203 MET204 PHE205 ILE206 LEU207 GLY208 PHE209 PHE210 GLY211 PRO212 ILE213 LEU214 ILE215 ILE216 PHE217 PHE218 CYS219 TYR220 PHE221 ASN222 ILE223 VAL224 MET225 SER226 VAL227 SER228 ASN229 HIS230 GLU231 LYS232 GLU233 MET234 ALA235 ALA236 MET237 ALA238 LYS239 ARG240 LEU241 ASN242 ALA243 LYS244 GLU245 LEU246 ARG247 LYS248 ALA249 GLN250 ALA251 GLY252 ALA253 ASN254 ALA255 GLU256 MET257 ARG258 LEU259 ALA260 LYS261 ILE262 SER263 ILE264 VAL265 ILE266 VAL267 SER268 GLN269 PHE270 LEU271 LEU272 SER273 TRP274 SER275 PRO276 TYR277 ALA278 VAL279 VAL280 ALA281 LEU282 LEU283 ALA284 GLN285 PHE286 GLY287 PRO288 LEU289 GLU290 TRP291 VAL292 THR293 PRO294 TYR295 ALA296 ALA297 GLN298 LEU299 PRO300 VAL301 MET302 PHE303 ALA304 LYS305 ALA306 SER307 ALA308 ILE309 HIS310 ASN311 PRO312 MET313 ILE314 TYR315 SER316 VAL317 SER318 HIS319 PRO320 LYS321 PHE322 ARG323 GLU324 ALA325 ILE326 SER327 GLN328 THR329 PHE330 PRO331 TRP332 VAL333 LEU334 THR335 CYS336 CYS337 GLN338 PHE339 ASP340 ASP341 LYS342 GLU343 THR344 GLU345 ASP346 ASP347 LYS348 ASP349 ALA350 GLU351 THR352 GLU353 ILE354 PRO355 |
Unit 3 | RET1000 PLM1001 BOG1005 |
Unit 4 | SO4449 RET1000 PC11004 BOG1005 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |