3AUO - Sequence, Chains, Asymmetric and Biological Units

• Title: DNA POLYMERASE X FROM THERMUS THERMOPHILUS HB8 TERNARY COMPL NT GAPPED DNA AND DDGTP
• Keywords: RSGI, STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOM INITIATIVE, POLXC DOMAIN, PHP DOMAIN, DNA POLYMERASE, DRP L ENDONUCLEASE, 3'-5' EXONUCLEASE, DNA REPAIR, DNA BINDING, N BINDING, TRANSFERASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3AUO	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA POLYMERASE BETA FAMILY (X FAMILY)	A	572	4500	0
2	Protein	DNA POLYMERASE BETA FAMILY (X FAMILY)	B	572	4500	0
3	Other macromolecule	1-NT GAPPED DNA	D	29	568	21
4	Other macromolecule	1-NT GAPPED DNA	E	29	568	21
5	Ligand	DNA POLYMERASE BETA FAMILY (X FAMILY)	A	4	0	33
6	Ligand	DNA POLYMERASE BETA FAMILY (X FAMILY)	B	4	0	33
7	Water			134	0	134
total				1344	10136	242

Proteins

Unit 1

MET 1 ARG 2 ASN 3 GLN 4 GLU 5 LEU 6 ALA 7 ARG 8 ILE 9 PHE 10 GLU 11 GLU 12 ILE 13 GLY 14 LEU 15 MET 16 SER 17 GLU 18 PHE 19 LEU 20 GLY 21 ASP 22 ASN 23 PRO 24 PHE 25 ARG 26 VAL 27 ARG 28 ALA 29 TYR 30 HIS 31 GLN 32 ALA 33 ALA 34 ARG 35 THR 36 LEU 37 TYR 38 ASP 39 LEU 40 ASP 41 THR 42 PRO 43 ILE 44 GLU 45 GLU 46 ILE 47 ALA 48 GLU 49 LYS 50 GLY 51 LYS 52 GLU 53 ALA 54 LEU 55 MET 56 GLU 57 LEU 58 PRO 59 GLY 60 VAL 61 GLY 62 PRO 63 ASP 64 LEU 65 ALA 66 GLU 67 LYS 68 ILE 69 LEU 70 GLU 71 PHE 72 LEU 73 ARG 74 THR 75 GLY 76 LYS 77 VAL 78 ARG 79 LYS 80 HIS 81 GLU 82 GLU 83 LEU 84 SER 85 ARG 86 LYS 87 VAL 88 PRO 89 ARG 90 GLY 91 VAL 92 LEU 93 GLU 94 VAL 95 MET 96 GLU 97 VAL 98 PRO 99 GLY 100 VAL 101 GLY 102 PRO 103 LYS 104 THR 105 ALA 106 ARG 107 LEU 108 LEU 109 TYR 110 GLU 111 GLY 112 LEU 113 GLY 114 ILE 115 ASP 116 SER 117 LEU 118 GLU 119 LYS 120 LEU 121 LYS 122 ALA 123 ALA 124 LEU 125 ASP 126 ARG 127 GLY 128 ASP 129 LEU 130 THR 131 ARG 132 LEU 133 LYS 134 GLY 135 PHE 136 GLY 137 PRO 138 LYS 139 ARG 140 ALA 141 GLU 142 ARG 143 ILE 144 ARG 145 GLU 146 GLY 147 LEU 148 ALA 149 LEU 150 ALA 151 GLN 152 ALA 153 ALA 154 GLY 155 LYS 156 ARG 157 ARG 158 PRO 159 LEU 160 GLY 161 ALA 162 VAL 163 LEU 164 SER 165 LEU 166 ALA 167 ARG 168 SER 169 LEU 170 LEU 171 GLU 172 ALA 173 ILE 174 ARG 175 ALA 176 LEU 177 PRO 178 GLY 179 VAL 180 GLU 181 ARG 182 ALA 183 GLU 184 LEU 185 CYS 186 GLY 187 SER 188 ALA 189 ARG 190 ARG 191 TYR 192 LYS 193 ASP 194 THR 195 VAL 196 GLY 197 ASP 198 LEU 199 ASP 200 PHE 201 LEU 202 VAL 203 ALA 204 SER 205 ARG 206 GLU 207 GLY 208 GLU 209 ARG 210 ALA 211 VAL 212 GLU 213 GLY 214 PHE 215 VAL 216 ARG 217 LEU 218 PRO 219 GLN 220 VAL 221 LYS 222 GLU 223 VAL 224 TYR 225 ALA 226 LYS 227 GLY 228 LYS 229 GLU 230 ARG 231 ALA 232 THR 233 VAL 234 PHE 235 LEU 236 LYS 237 ASN 238 GLY 239 LEU 240 GLN 241 VAL 242 ASP 243 LEU 244 ARG 245 VAL 246 VAL 247 PRO 248 PRO 249 GLU 250 SER 251 TYR 252 GLY 253 ALA 254 GLY 255 LEU 256 GLN 257 TYR 258 LEU 259 THR 260 GLY 261 SER 262 LYS 263 ALA 264 HIS 265 SER 266 ILE 267 ARG 268 LEU 269 ARG 270 ALA 271 LEU 272 ALA 273 GLN 274 GLU 275 LYS 276 GLY 277 LEU 278 LYS 279 LEU 280 SER 281 GLU 282 TYR 283 GLY 284 VAL 285 PHE 286 ARG 287 GLY 288 GLU 289 LYS 290 ARG 291 ILE 292 ALA 293 GLY 294 GLU 295 THR 296 GLU 297 GLU 298 GLU 299 VAL 300 TYR 301 ALA 302 ALA 303 LEU 304 GLY 305 LEU 306 PRO 307 TRP 308 ILE 309 PRO 310 PRO 311 PRO 312 LEU 313 ARG 314 GLU 315 ASP 316 GLN 317 GLY 318 GLU 319 VAL 320 GLU 321 ALA 322 ALA 323 LEU 324 GLU 325 GLY 326 ARG 327 LEU 328 PRO 329 LYS 330 LEU 331 LEU 332 GLU 333 LEU 334 PRO 335 GLN 336 VAL 337 LYS 338 GLY 339 ASP 340 LEU 341 GLN 342 VAL 343 HIS 344 SER 345 THR 346 TYR 347 SER 348 ASP 349 GLY 350 GLN 351 ASN 352 THR 353 LEU 354 GLU 355 GLU 356 LEU 357 TRP 358 GLU 359 ALA 360 ALA 361 LYS 362 THR 363 MET 364 GLY 365 TYR 366 ARG 367 TYR 368 LEU 369 ALA 370 VAL 371 THR 372 ASP 373 HIS 374 SER 375 PRO 376 ALA 377 VAL 378 ARG 379 VAL 380 ALA 381 GLY 382 GLY 383 PRO 384 SER 385 PRO 386 GLU 387 GLU 388 ALA 389 LEU 390 LYS 391 ARG 392 VAL 393 GLY 394 GLU 395 ILE 396 ARG 397 ARG 398 PHE 399 ASN 400 GLU 401 THR 402 HIS 403 GLY 404 PRO 405 PRO 406 TYR 407 LEU 408 LEU 409 ALA 410 GLY 411 ALA 412 GLU 413 VAL 414 ASP 415 ILE 416 HIS 417 PRO 418 ASP 419 GLY 420 THR 421 LEU 422 ASP 423 TYR 424 PRO 425 ASP 426 TRP 427 VAL 428 LEU 429 ARG 430 GLU 431 LEU 432 ASP 433 LEU 434 VAL 435 LEU 436 VAL 437 SER 438 VAL 439 HIS 440 SER 441 ARG 442 PHE 443 ASN 444 LEU 445 PRO 446 LYS 447 ALA 448 ASP 449 GLN 450 THR 451 LYS 452 ARG 453 LEU 454 LEU 455 LYS 456 ALA 457 LEU 458 GLU 459 ASN 460 PRO 461 PHE 462 VAL 463 HIS 464 VAL 465 LEU 466 ALA 467 HIS 468 PRO 469 THR 470 ALA 471 ARG 472 LEU 473 LEU 474 GLY 475 ARG 476 ARG 477 ALA 478 PRO 479 ILE 480 GLU 481 ALA 482 ASP 483 TRP 484 GLU 485 ALA 486 VAL 487 PHE 488 GLN 489 LYS 490 ALA 491 LYS 492 GLU 493 LYS 494 GLY 495 VAL 496 ALA 497 VAL 498 GLU 499 ILE 500 ASP 501 GLY 502 TYR 503 TYR 504 ASP 505 ARG 506 MET 507 ASP 508 LEU 509 PRO 510 ASP 511 ASP 512 LEU 513 ALA 514 ARG 515 MET 516 ALA 517 TYR 518 GLY 519 MET 520 GLY 521 LEU 522 TRP 523 ILE 524 SER 525 LEU 526 SER 527 THR 528 ASP 529 ALA 530 HIS 531 GLN 532 THR 533 ASP 534 HIS 535 LEU 536 ARG 537 PHE 538 MET 539 GLU 540 LEU 541 ALA 542 VAL 543 GLY 544 THR 545 ALA 546 GLN 547 ARG 548 ALA 549 TRP 550 ILE 551 GLY 552 PRO 553 GLU 554 ARG 555 VAL 556 LEU 557 ASN 558 THR 559 LEU 560 ASP 561 TYR 562 GLU 563 ASP 564 LEU 565 LEU 566 SER 567 TRP 568 LEU 569 LYS 570 ALA 571 ARG 572

Unit 2

MET 1 ARG 2 ASN 3 GLN 4 GLU 5 LEU 6 ALA 7 ARG 8 ILE 9 PHE 10 GLU 11 GLU 12 ILE 13 GLY 14 LEU 15 MET 16 SER 17 GLU 18 PHE 19 LEU 20 GLY 21 ASP 22 ASN 23 PRO 24 PHE 25 ARG 26 VAL 27 ARG 28 ALA 29 TYR 30 HIS 31 GLN 32 ALA 33 ALA 34 ARG 35 THR 36 LEU 37 TYR 38 ASP 39 LEU 40 ASP 41 THR 42 PRO 43 ILE 44 GLU 45 GLU 46 ILE 47 ALA 48 GLU 49 LYS 50 GLY 51 LYS 52 GLU 53 ALA 54 LEU 55 MET 56 GLU 57 LEU 58 PRO 59 GLY 60 VAL 61 GLY 62 PRO 63 ASP 64 LEU 65 ALA 66 GLU 67 LYS 68 ILE 69 LEU 70 GLU 71 PHE 72 LEU 73 ARG 74 THR 75 GLY 76 LYS 77 VAL 78 ARG 79 LYS 80 HIS 81 GLU 82 GLU 83 LEU 84 SER 85 ARG 86 LYS 87 VAL 88 PRO 89 ARG 90 GLY 91 VAL 92 LEU 93 GLU 94 VAL 95 MET 96 GLU 97 VAL 98 PRO 99 GLY 100 VAL 101 GLY 102 PRO 103 LYS 104 THR 105 ALA 106 ARG 107 LEU 108 LEU 109 TYR 110 GLU 111 GLY 112 LEU 113 GLY 114 ILE 115 ASP 116 SER 117 LEU 118 GLU 119 LYS 120 LEU 121 LYS 122 ALA 123 ALA 124 LEU 125 ASP 126 ARG 127 GLY 128 ASP 129 LEU 130 THR 131 ARG 132 LEU 133 LYS 134 GLY 135 PHE 136 GLY 137 PRO 138 LYS 139 ARG 140 ALA 141 GLU 142 ARG 143 ILE 144 ARG 145 GLU 146 GLY 147 LEU 148 ALA 149 LEU 150 ALA 151 GLN 152 ALA 153 ALA 154 GLY 155 LYS 156 ARG 157 ARG 158 PRO 159 LEU 160 GLY 161 ALA 162 VAL 163 LEU 164 SER 165 LEU 166 ALA 167 ARG 168 SER 169 LEU 170 LEU 171 GLU 172 ALA 173 ILE 174 ARG 175 ALA 176 LEU 177 PRO 178 GLY 179 VAL 180 GLU 181 ARG 182 ALA 183 GLU 184 LEU 185 CYS 186 GLY 187 SER 188 ALA 189 ARG 190 ARG 191 TYR 192 LYS 193 ASP 194 THR 195 VAL 196 GLY 197 ASP 198 LEU 199 ASP 200 PHE 201 LEU 202 VAL 203 ALA 204 SER 205 ARG 206 GLU 207 GLY 208 GLU 209 ARG 210 ALA 211 VAL 212 GLU 213 GLY 214 PHE 215 VAL 216 ARG 217 LEU 218 PRO 219 GLN 220 VAL 221 LYS 222 GLU 223 VAL 224 TYR 225 ALA 226 LYS 227 GLY 228 LYS 229 GLU 230 ARG 231 ALA 232 THR 233 VAL 234 PHE 235 LEU 236 LYS 237 ASN 238 GLY 239 LEU 240 GLN 241 VAL 242 ASP 243 LEU 244 ARG 245 VAL 246 VAL 247 PRO 248 PRO 249 GLU 250 SER 251 TYR 252 GLY 253 ALA 254 GLY 255 LEU 256 GLN 257 TYR 258 LEU 259 THR 260 GLY 261 SER 262 LYS 263 ALA 264 HIS 265 SER 266 ILE 267 ARG 268 LEU 269 ARG 270 ALA 271 LEU 272 ALA 273 GLN 274 GLU 275 LYS 276 GLY 277 LEU 278 LYS 279 LEU 280 SER 281 GLU 282 TYR 283 GLY 284 VAL 285 PHE 286 ARG 287 GLY 288 GLU 289 LYS 290 ARG 291 ILE 292 ALA 293 GLY 294 GLU 295 THR 296 GLU 297 GLU 298 GLU 299 VAL 300 TYR 301 ALA 302 ALA 303 LEU 304 GLY 305 LEU 306 PRO 307 TRP 308 ILE 309 PRO 310 PRO 311 PRO 312 LEU 313 ARG 314 GLU 315 ASP 316 GLN 317 GLY 318 GLU 319 VAL 320 GLU 321 ALA 322 ALA 323 LEU 324 GLU 325 GLY 326 ARG 327 LEU 328 PRO 329 LYS 330 LEU 331 LEU 332 GLU 333 LEU 334 PRO 335 GLN 336 VAL 337 LYS 338 GLY 339 ASP 340 LEU 341 GLN 342 VAL 343 HIS 344 SER 345 THR 346 TYR 347 SER 348 ASP 349 GLY 350 GLN 351 ASN 352 THR 353 LEU 354 GLU 355 GLU 356 LEU 357 TRP 358 GLU 359 ALA 360 ALA 361 LYS 362 THR 363 MET 364 GLY 365 TYR 366 ARG 367 TYR 368 LEU 369 ALA 370 VAL 371 THR 372 ASP 373 HIS 374 SER 375 PRO 376 ALA 377 VAL 378 ARG 379 VAL 380 ALA 381 GLY 382 GLY 383 PRO 384 SER 385 PRO 386 GLU 387 GLU 388 ALA 389 LEU 390 LYS 391 ARG 392 VAL 393 GLY 394 GLU 395 ILE 396 ARG 397 ARG 398 PHE 399 ASN 400 GLU 401 THR 402 HIS 403 GLY 404 PRO 405 PRO 406 TYR 407 LEU 408 LEU 409 ALA 410 GLY 411 ALA 412 GLU 413 VAL 414 ASP 415 ILE 416 HIS 417 PRO 418 ASP 419 GLY 420 THR 421 LEU 422 ASP 423 TYR 424 PRO 425 ASP 426 TRP 427 VAL 428 LEU 429 ARG 430 GLU 431 LEU 432 ASP 433 LEU 434 VAL 435 LEU 436 VAL 437 SER 438 VAL 439 HIS 440 SER 441 ARG 442 PHE 443 ASN 444 LEU 445 PRO 446 LYS 447 ALA 448 ASP 449 GLN 450 THR 451 LYS 452 ARG 453 LEU 454 LEU 455 LYS 456 ALA 457 LEU 458 GLU 459 ASN 460 PRO 461 PHE 462 VAL 463 HIS 464 VAL 465 LEU 466 ALA 467 HIS 468 PRO 469 THR 470 ALA 471 ARG 472 LEU 473 LEU 474 GLY 475 ARG 476 ARG 477 ALA 478 PRO 479 ILE 480 GLU 481 ALA 482 ASP 483 TRP 484 GLU 485 ALA 486 VAL 487 PHE 488 GLN 489 LYS 490 ALA 491 LYS 492 GLU 493 LYS 494 GLY 495 VAL 496 ALA 497 VAL 498 GLU 499 ILE 500 ASP 501 GLY 502 TYR 503 TYR 504 ASP 505 ARG 506 MET 507 ASP 508 LEU 509 PRO 510 ASP 511 ASP 512 LEU 513 ALA 514 ARG 515 MET 516 ALA 517 TYR 518 GLY 519 MET 520 GLY 521 LEU 522 TRP 523 ILE 524 SER 525 LEU 526 SER 527 THR 528 ASP 529 ALA 530 HIS 531 GLN 532 THR 533 ASP 534 HIS 535 LEU 536 ARG 537 PHE 538 MET 539 GLU 540 LEU 541 ALA 542 VAL 543 GLY 544 THR 545 ALA 546 GLN 547 ARG 548 ALA 549 TRP 550 ILE 551 GLY 552 PRO 553 GLU 554 ARG 555 VAL 556 LEU 557 ASN 558 THR 559 LEU 560 ASP 561 TYR 562 GLU 563 ASP 564 LEU 565 LEU 566 SER 567 TRP 568 LEU 569 LYS 570 ALA 571 ARG 572

Other macromolecules

Unit 3	DG 1 DC 2 DC 3 DG 4 DT 5 DT 6 DT 7 DT 8 DC 9 DG 10 DG 11 DC 12 DC 13 DC 14 DG 15 DA 16 DC 17 DT 18 DG 19 DT 20 DT 21 DT 22 DT 23 DC 24 DA 25 DG 26 DT 27 DC 28 DDG 29
Unit 4	DG 1 DC 2 DC 3 DG 4 DT 5 DT 6 DT 7 DT 8 DC 9 DG 10 DG 11 DC 12 DC 13 DC 14 DG 15 DA 16 DC 17 DT 18 DG 19 DT 20 DT 21 DT 22 DT 23 DC 24 DA 25 DG 26 DT 27 DC 28 DDG 29

Ligands

Unit 5	DG3 576 MG 577 MG 578 ZN 579
Unit 6	DG3 576 MG 577 MG 578 ZN 579