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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WI ANTICODON-STEM/LOOP TRUNCATED TRNA(SEC)
Keywords KINASE, TRANSFERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3AM1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   L-SERYL-TRNA(SEC) KINASE  A 236 1878 0
2  RNA    B 81 1734 0
3  Ligand   L-SERYL-TRNA(SEC) KINASE  A 2 0 32
4 Water     7 0 7
total       326 3612 39

Proteins
Unit 1 ASP3 ILE4 MET5 LEU6 ILE7 ILE8 LEU9 THR10 GLY11 LEU12 PRO13 GLY14 VAL15 GLY16 LYS17 SER18 THR19 PHE20 SER21 LYS22 ASN23 LEU24 ALA25 LYS26 ILE27 LEU28 SER29 LYS30 ASN31 ASN32 ILE33 ASP34 VAL35 ILE36 VAL37 LEU38 GLY39 SER40 ASP41 LEU42 ILE43 ARG44 GLU45 SER46 PHE47 PRO48 VAL49 TRP50 LYS51 GLU52 LYS53 TYR54 GLU55 GLU56 PHE57 ILE58 LYS59 LYS60 SER61 THR62 TYR63 ARG64 LEU65 ILE66 ASP67 SER68 ALA69 LEU70 LYS71 ASN72 TYR73 TRP74 VAL75 ILE76 VAL77 ASP78 ASP79 THR80 ASN81 TYR82 TYR83 ASN84 SER85 MET86 ARG87 ARG88 ASP89 LEU90 ILE91 ASN92 ILE93 ALA94 LYS95 LYS96 TYR97 ASN98 LYS99 ASN100 TYR101 ALA102 ILE103 ILE104 TYR105 LEU106 LYS107 ALA108 SER109 LEU110 ASP111 VAL112 LEU113 ILE114 ARG115 ARG116 ASN117 ILE118 GLU119 ARG120 GLY121 GLU122 LYS123 ILE124 PRO125 ASN126 GLU127 VAL128 ILE129 LYS130 LYS131 MET132 TYR133 GLU134 LYS135 PHE136 ASP137 GLU138 PRO139 GLY140 LYS141 LYS142 TYR143 LYS144 TRP145 ASP146 GLU147 PRO148 PHE149 LEU150 ILE151 ILE152 ASP153 THR154 THR155 LYS156 ASP157 ILE158 ASP159 PHE160 ASN161 GLU162 ILE163 ALA164 LYS165 LYS166 LEU167 ILE168 GLU169 LYS170 SER171 LYS172 GLU173 ILE174 PRO175 LYS176 PHE177 ASN189 ILE190 SER191 ASP192 LYS193 ILE194 ASP195 LYS196 GLU197 THR198 ARG199 LYS200 ILE201 VAL202 SER203 GLU204 TYR205 ILE206 LYS207 SER208 LYS209 LYS210 LEU211 ASP212 LYS213 ASP214 LYS215 ILE216 LYS217 GLU218 VAL219 VAL220 GLU221 LEU222 ARG223 LYS224 GLU225 PHE226 LEU227 LYS228 LYS229 ILE230 LYS231 LYS232 VAL236 ASP237 ALA238 ASP239 ARG240 VAL241 LEU242 LYS243 GLU244 PHE245 LYS246 ASP247 LEU248 LEU249 ASN250 SER251 TYR252

Nucleic acids
Unit 2 G1 G2 C3 G4 C5 G6 G7 G8 G9 U10 A11 C12 C13 G14 G15 G16 C17 U18 U19 G20 G21 U22 A23 G24 C25 C26 C27 G28 G29 G30 G31 C32 U33 U34 C35 G36 G37 C38 C39 G40 A41 G42 G43 G44 C45 G46 A47 G48 A49 G50 C51 C52 C53 U54 C55 G56 G57 G58 G59 U60 U61 C62 G63 A64 U65 U66 C67 C68 C69 C70 C71 C72 C73 U74 G75 C76 G77 C78 C79 G80 C81

Ligands
Unit 3 ATP301 MG401

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany