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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TNF-TNFR2 COMPLEX
Keywords LIGAND-RECEPTOR COMPLEX, CYTOKINE, CYTOKINE-CYTOKINE RECEPTO
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3ALQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TUMOR NECROSIS FACTOR  A 141 1097 0
2  Protein   TUMOR NECROSIS FACTOR  B 141 1097 0
3  Protein   TUMOR NECROSIS FACTOR  C 141 1097 0
4  Protein   TUMOR NECROSIS FACTOR  D 141 1097 0
5  Protein   TUMOR NECROSIS FACTOR  E 141 1097 0
6  Protein   TUMOR NECROSIS FACTOR  F 141 1097 0
7  Protein    R 162 1222 0
8  Protein    S 164 1232 0
9  Protein    T 162 1222 0
10  Protein    U 161 1215 0
11  Protein    V 161 1215 0
12  Protein    W 162 1222 0
13  Ligand    R 1 0 1
14  Ligand    S 1 0 1
15  Ligand    T 1 0 1
16  Ligand    U 1 0 1
17  Ligand    V 1 0 1
18  Ligand    W 1 0 1
19 Water     7 0 11
total       1831 13910 17
Proteins
Unit 1 SER9 ASP10 MET11 PRO12 VAL13 ALA14 HIS15 VAL16 VAL17 ALA18 ASN19 PRO20 GLN21 ALA22 GLU23 GLY24 GLN25 LEU26 GLN27 TRP28 LEU29 ASN30 ARG31 ARG32 ALA33 ASN34 ALA35 LEU36 LEU37 ALA38 ASN39 GLY40 VAL41 GLU42 LEU43 ARG44 ASP45 ASN46 GLN47 LEU48 VAL49 VAL50 PRO51 SER52 GLU53 GLY54 LEU55 TYR56 LEU57 ILE58 TYR59 SER60 GLN61 VAL62 LEU63 PHE64 SER65 GLY66 GLN67 GLY68 CYS69 PRO70 SER71 THR72 HIS73 VAL74 LEU75 LEU76 THR77 HIS78 THR79 ILE80 SER81 ARG82 ILE83 ALA84 VAL85 SER86 TYR87 GLN88 THR89 PRO90 VAL91 ASN92 LEU93 LEU94 SER95 ALA96 ILE97 ARG98 SER99 PRO100 CYS101 GLN102 ALA111 ASN112 PRO113 TRP114 TYR115 GLU116 PRO117 ILE118 TYR119 LEU120 GLY121 GLY122 VAL123 PHE124 GLN125 LEU126 GLU127 PRO128 GLY129 ASP130 ARG131 LEU132 SER133 ALA134 GLU135 ILE136 ASN137 ARG138 PRO139 ASP140 TYR141 LEU142 ASP143 PHE144 ALA145 GLU146 SER147 GLY148 GLN149 VAL150 TYR151 PHE152 GLY153 ILE154 ILE155 ALA156 LEU157
Unit 2 SER9 ASP10 MET11 PRO12 VAL13 ALA14 HIS15 VAL16 VAL17 ALA18 ASN19 PRO20 GLN21 ALA22 GLU23 GLY24 GLN25 LEU26 GLN27 TRP28 LEU29 ASN30 ARG31 ARG32 ALA33 ASN34 ALA35 LEU36 LEU37 ALA38 ASN39 GLY40 VAL41 GLU42 LEU43 ARG44 ASP45 ASN46 GLN47 LEU48 VAL49 VAL50 PRO51 SER52 GLU53 GLY54 LEU55 TYR56 LEU57 ILE58 TYR59 SER60 GLN61 VAL62 LEU63 PHE64 SER65 GLY66 GLN67 GLY68 CYS69 PRO70 SER71 THR72 HIS73 VAL74 LEU75 LEU76 THR77 HIS78 THR79 ILE80 SER81 ARG82 ILE83 ALA84 VAL85 SER86 TYR87 GLN88 THR89 PRO90 VAL91 ASN92 LEU93 LEU94 SER95 ALA96 ILE97 ARG98 SER99 PRO100 CYS101 GLN102 ALA111 ASN112 PRO113 TRP114 TYR115 GLU116 PRO117 ILE118 TYR119 LEU120 GLY121 GLY122 VAL123 PHE124 GLN125 LEU126 GLU127 PRO128 GLY129 ASP130 ARG131 LEU132 SER133 ALA134 GLU135 ILE136 ASN137 ARG138 PRO139 ASP140 TYR141 LEU142 ASP143 PHE144 ALA145 GLU146 SER147 GLY148 GLN149 VAL150 TYR151 PHE152 GLY153 ILE154 ILE155 ALA156 LEU157
Unit 3 SER9 ASP10 MET11 PRO12 VAL13 ALA14 HIS15 VAL16 VAL17 ALA18 ASN19 PRO20 GLN21 ALA22 GLU23 GLY24 GLN25 LEU26 GLN27 TRP28 LEU29 ASN30 ARG31 ARG32 ALA33 ASN34 ALA35 LEU36 LEU37 ALA38 ASN39 GLY40 VAL41 GLU42 LEU43 ARG44 ASP45 ASN46 GLN47 LEU48 VAL49 VAL50 PRO51 SER52 GLU53 GLY54 LEU55 TYR56 LEU57 ILE58 TYR59 SER60 GLN61 VAL62 LEU63 PHE64 SER65 GLY66 GLN67 GLY68 CYS69 PRO70 SER71 THR72 HIS73 VAL74 LEU75 LEU76 THR77 HIS78 THR79 ILE80 SER81 ARG82 ILE83 ALA84 VAL85 SER86 TYR87 GLN88 THR89 PRO90 VAL91 ASN92 LEU93 LEU94 SER95 ALA96 ILE97 ARG98 SER99 PRO100 CYS101 GLN102 ALA111 ASN112 PRO113 TRP114 TYR115 GLU116 PRO117 ILE118 TYR119 LEU120 GLY121 GLY122 VAL123 PHE124 GLN125 LEU126 GLU127 PRO128 GLY129 ASP130 ARG131 LEU132 SER133 ALA134 GLU135 ILE136 ASN137 ARG138 PRO139 ASP140 TYR141 LEU142 ASP143 PHE144 ALA145 GLU146 SER147 GLY148 GLN149 VAL150 TYR151 PHE152 GLY153 ILE154 ILE155 ALA156 LEU157
Unit 4 SER9 ASP10 MET11 PRO12 VAL13 ALA14 HIS15 VAL16 VAL17 ALA18 ASN19 PRO20 GLN21 ALA22 GLU23 GLY24 GLN25 LEU26 GLN27 TRP28 LEU29 ASN30 ARG31 ARG32 ALA33 ASN34 ALA35 LEU36 LEU37 ALA38 ASN39 GLY40 VAL41 GLU42 LEU43 ARG44 ASP45 ASN46 GLN47 LEU48 VAL49 VAL50 PRO51 SER52 GLU53 GLY54 LEU55 TYR56 LEU57 ILE58 TYR59 SER60 GLN61 VAL62 LEU63 PHE64 SER65 GLY66 GLN67 GLY68 CYS69 PRO70 SER71 THR72 HIS73 VAL74 LEU75 LEU76 THR77 HIS78 THR79 ILE80 SER81 ARG82 ILE83 ALA84 VAL85 SER86 TYR87 GLN88 THR89 PRO90 VAL91 ASN92 LEU93 LEU94 SER95 ALA96 ILE97 ARG98 SER99 PRO100 CYS101 GLN102 ALA111 ASN112 PRO113 TRP114 TYR115 GLU116 PRO117 ILE118 TYR119 LEU120 GLY121 GLY122 VAL123 PHE124 GLN125 LEU126 GLU127 PRO128 GLY129 ASP130 ARG131 LEU132 SER133 ALA134 GLU135 ILE136 ASN137 ARG138 PRO139 ASP140 TYR141 LEU142 ASP143 PHE144 ALA145 GLU146 SER147 GLY148 GLN149 VAL150 TYR151 PHE152 GLY153 ILE154 ILE155 ALA156 LEU157
Unit 5 SER9 ASP10 MET11 PRO12 VAL13 ALA14 HIS15 VAL16 VAL17 ALA18 ASN19 PRO20 GLN21 ALA22 GLU23 GLY24 GLN25 LEU26 GLN27 TRP28 LEU29 ASN30 ARG31 ARG32 ALA33 ASN34 ALA35 LEU36 LEU37 ALA38 ASN39 GLY40 VAL41 GLU42 LEU43 ARG44 ASP45 ASN46 GLN47 LEU48 VAL49 VAL50 PRO51 SER52 GLU53 GLY54 LEU55 TYR56 LEU57 ILE58 TYR59 SER60 GLN61 VAL62 LEU63 PHE64 SER65 GLY66 GLN67 GLY68 CYS69 PRO70 SER71 THR72 HIS73 VAL74 LEU75 LEU76 THR77 HIS78 THR79 ILE80 SER81 ARG82 ILE83 ALA84 VAL85 SER86 TYR87 GLN88 THR89 PRO90 VAL91 ASN92 LEU93 LEU94 SER95 ALA96 ILE97 ARG98 SER99 PRO100 CYS101 GLN102 ALA111 ASN112 PRO113 TRP114 TYR115 GLU116 PRO117 ILE118 TYR119 LEU120 GLY121 GLY122 VAL123 PHE124 GLN125 LEU126 GLU127 PRO128 GLY129 ASP130 ARG131 LEU132 SER133 ALA134 GLU135 ILE136 ASN137 ARG138 PRO139 ASP140 TYR141 LEU142 ASP143 PHE144 ALA145 GLU146 SER147 GLY148 GLN149 VAL150 TYR151 PHE152 GLY153 ILE154 ILE155 ALA156 LEU157
Unit 6 SER9 ASP10 MET11 PRO12 VAL13 ALA14 HIS15 VAL16 VAL17 ALA18 ASN19 PRO20 GLN21 ALA22 GLU23 GLY24 GLN25 LEU26 GLN27 TRP28 LEU29 ASN30 ARG31 ARG32 ALA33 ASN34 ALA35 LEU36 LEU37 ALA38 ASN39 GLY40 VAL41 GLU42 LEU43 ARG44 ASP45 ASN46 GLN47 LEU48 VAL49 VAL50 PRO51 SER52 GLU53 GLY54 LEU55 TYR56 LEU57 ILE58 TYR59 SER60 GLN61 VAL62 LEU63 PHE64 SER65 GLY66 GLN67 GLY68 CYS69 PRO70 SER71 THR72 HIS73 VAL74 LEU75 LEU76 THR77 HIS78 THR79 ILE80 SER81 ARG82 ILE83 ALA84 VAL85 SER86 TYR87 GLN88 THR89 PRO90 VAL91 ASN92 LEU93 LEU94 SER95 ALA96 ILE97 ARG98 SER99 PRO100 CYS101 GLN102 ALA111 ASN112 PRO113 TRP114 TYR115 GLU116 PRO117 ILE118 TYR119 LEU120 GLY121 GLY122 VAL123 PHE124 GLN125 LEU126 GLU127 PRO128 GLY129 ASP130 ARG131 LEU132 SER133 ALA134 GLU135 ILE136 ASN137 ARG138 PRO139 ASP140 TYR141 LEU142 ASP143 PHE144 ALA145 GLU146 SER147 GLY148 GLN149 VAL150 TYR151 PHE152 GLY153 ILE154 ILE155 ALA156 LEU157
Unit 7 THR17 CYS18 ARG19 LEU20 ARG21 GLU22 TYR23 TYR24 ASP25 GLN26 THR27 ALA28 GLN29 MET30 CYS31 CYS32 SER33 LYS34 CYS35 SER36 PRO37 GLY38 GLN39 HIS40 ALA41 LYS42 VAL43 PHE44 CYS45 THR46 LYS47 THR48 SER49 ASP50 THR51 VAL52 CYS53 ASP54 SER55 CYS56 GLU57 ASP58 SER59 THR60 TYR61 THR62 GLN63 LEU64 TRP65 ASN66 TRP67 VAL68 PRO69 GLU70 CYS71 LEU72 SER73 CYS74 GLY75 SER76 ARG77 CYS78 SER79 SER80 ASP81 GLN82 VAL83 GLU84 THR85 GLN86 ALA87 CYS88 THR89 ARG90 GLU91 GLN92 ASN93 ARG94 ILE95 CYS96 THR97 CYS98 ARG99 PRO100 GLY101 TRP102 TYR103 CYS104 ALA105 LEU106 SER107 LYS108 GLN109 GLU110 GLY111 CYS112 ARG113 LEU114 CYS115 ALA116 PRO117 LEU118 ARG119 LYS120 CYS121 ARG122 PRO123 GLY124 PHE125 GLY126 VAL127 ALA128 ARG129 PRO130 GLY131 THR132 GLU133 THR134 SER135 ASP136 VAL137 VAL138 CYS139 LYS140 PRO141 CYS142 ALA143 PRO144 GLY145 THR146 PHE147 SER148 ASN149 THR150 THR151 SER152 SER153 THR154 ASP155 ILE156 CYS157 ARG158 PRO159 HIS160 GLN161 ILE162 CYS163 ASN164 VAL165 VAL166 ALA167 ILE168 PRO169 GLY170 ASN171 ALA172 SER173 MET174 ASP175 ALA176 VAL177 CYS178
Unit 8 GLY15 SER16 THR17 CYS18 ARG19 LEU20 ARG21 GLU22 TYR23 TYR24 ASP25 GLN26 THR27 ALA28 GLN29 MET30 CYS31 CYS32 SER33 LYS34 CYS35 SER36 PRO37 GLY38 GLN39 HIS40 ALA41 LYS42 VAL43 PHE44 CYS45 THR46 LYS47 THR48 SER49 ASP50 THR51 VAL52 CYS53 ASP54 SER55 CYS56 GLU57 ASP58 SER59 THR60 TYR61 THR62 GLN63 LEU64 TRP65 ASN66 TRP67 VAL68 PRO69 GLU70 CYS71 LEU72 SER73 CYS74 GLY75 SER76 ARG77 CYS78 SER79 SER80 ASP81 GLN82 VAL83 GLU84 THR85 GLN86 ALA87 CYS88 THR89 ARG90 GLU91 GLN92 ASN93 ARG94 ILE95 CYS96 THR97 CYS98 ARG99 PRO100 GLY101 TRP102 TYR103 CYS104 ALA105 LEU106 SER107 LYS108 GLN109 GLU110 GLY111 CYS112 ARG113 LEU114 CYS115 ALA116 PRO117 LEU118 ARG119 LYS120 CYS121 ARG122 PRO123 GLY124 PHE125 GLY126 VAL127 ALA128 ARG129 PRO130 GLY131 THR132 GLU133 THR134 SER135 ASP136 VAL137 VAL138 CYS139 LYS140 PRO141 CYS142 ALA143 PRO144 GLY145 THR146 PHE147 SER148 ASN149 THR150 THR151 SER152 SER153 THR154 ASP155 ILE156 CYS157 ARG158 PRO159 HIS160 GLN161 ILE162 CYS163 ASN164 VAL165 VAL166 ALA167 ILE168 PRO169 GLY170 ASN171 ALA172 SER173 MET174 ASP175 ALA176 VAL177 CYS178
Unit 9 THR17 CYS18 ARG19 LEU20 ARG21 GLU22 TYR23 TYR24 ASP25 GLN26 THR27 ALA28 GLN29 MET30 CYS31 CYS32 SER33 LYS34 CYS35 SER36 PRO37 GLY38 GLN39 HIS40 ALA41 LYS42 VAL43 PHE44 CYS45 THR46 LYS47 THR48 SER49 ASP50 THR51 VAL52 CYS53 ASP54 SER55 CYS56 GLU57 ASP58 SER59 THR60 TYR61 THR62 GLN63 LEU64 TRP65 ASN66 TRP67 VAL68 PRO69 GLU70 CYS71 LEU72 SER73 CYS74 GLY75 SER76 ARG77 CYS78 SER79 SER80 ASP81 GLN82 VAL83 GLU84 THR85 GLN86 ALA87 CYS88 THR89 ARG90 GLU91 GLN92 ASN93 ARG94 ILE95 CYS96 THR97 CYS98 ARG99 PRO100 GLY101 TRP102 TYR103 CYS104 ALA105 LEU106 SER107 LYS108 GLN109 GLU110 GLY111 CYS112 ARG113 LEU114 CYS115 ALA116 PRO117 LEU118 ARG119 LYS120 CYS121 ARG122 PRO123 GLY124 PHE125 GLY126 VAL127 ALA128 ARG129 PRO130 GLY131 THR132 GLU133 THR134 SER135 ASP136 VAL137 VAL138 CYS139 LYS140 PRO141 CYS142 ALA143 PRO144 GLY145 THR146 PHE147 SER148 ASN149 THR150 THR151 SER152 SER153 THR154 ASP155 ILE156 CYS157 ARG158 PRO159 HIS160 GLN161 ILE162 CYS163 ASN164 VAL165 VAL166 ALA167 ILE168 PRO169 GLY170 ASN171 ALA172 SER173 MET174 ASP175 ALA176 VAL177 CYS178
Unit 10 CYS18 ARG19 LEU20 ARG21 GLU22 TYR23 TYR24 ASP25 GLN26 THR27 ALA28 GLN29 MET30 CYS31 CYS32 SER33 LYS34 CYS35 SER36 PRO37 GLY38 GLN39 HIS40 ALA41 LYS42 VAL43 PHE44 CYS45 THR46 LYS47 THR48 SER49 ASP50 THR51 VAL52 CYS53 ASP54 SER55 CYS56 GLU57 ASP58 SER59 THR60 TYR61 THR62 GLN63 LEU64 TRP65 ASN66 TRP67 VAL68 PRO69 GLU70 CYS71 LEU72 SER73 CYS74 GLY75 SER76 ARG77 CYS78 SER79 SER80 ASP81 GLN82 VAL83 GLU84 THR85 GLN86 ALA87 CYS88 THR89 ARG90 GLU91 GLN92 ASN93 ARG94 ILE95 CYS96 THR97 CYS98 ARG99 PRO100 GLY101 TRP102 TYR103 CYS104 ALA105 LEU106 SER107 LYS108 GLN109 GLU110 GLY111 CYS112 ARG113 LEU114 CYS115 ALA116 PRO117 LEU118 ARG119 LYS120 CYS121 ARG122 PRO123 GLY124 PHE125 GLY126 VAL127 ALA128 ARG129 PRO130 GLY131 THR132 GLU133 THR134 SER135 ASP136 VAL137 VAL138 CYS139 LYS140 PRO141 CYS142 ALA143 PRO144 GLY145 THR146 PHE147 SER148 ASN149 THR150 THR151 SER152 SER153 THR154 ASP155 ILE156 CYS157 ARG158 PRO159 HIS160 GLN161 ILE162 CYS163 ASN164 VAL165 VAL166 ALA167 ILE168 PRO169 GLY170 ASN171 ALA172 SER173 MET174 ASP175 ALA176 VAL177 CYS178
Unit 11 CYS18 ARG19 LEU20 ARG21 GLU22 TYR23 TYR24 ASP25 GLN26 THR27 ALA28 GLN29 MET30 CYS31 CYS32 SER33 LYS34 CYS35 SER36 PRO37 GLY38 GLN39 HIS40 ALA41 LYS42 VAL43 PHE44 CYS45 THR46 LYS47 THR48 SER49 ASP50 THR51 VAL52 CYS53 ASP54 SER55 CYS56 GLU57 ASP58 SER59 THR60 TYR61 THR62 GLN63 LEU64 TRP65 ASN66 TRP67 VAL68 PRO69 GLU70 CYS71 LEU72 SER73 CYS74 GLY75 SER76 ARG77 CYS78 SER79 SER80 ASP81 GLN82 VAL83 GLU84 THR85 GLN86 ALA87 CYS88 THR89 ARG90 GLU91 GLN92 ASN93 ARG94 ILE95 CYS96 THR97 CYS98 ARG99 PRO100 GLY101 TRP102 TYR103 CYS104 ALA105 LEU106 SER107 LYS108 GLN109 GLU110 GLY111 CYS112 ARG113 LEU114 CYS115 ALA116 PRO117 LEU118 ARG119 LYS120 CYS121 ARG122 PRO123 GLY124 PHE125 GLY126 VAL127 ALA128 ARG129 PRO130 GLY131 THR132 GLU133 THR134 SER135 ASP136 VAL137 VAL138 CYS139 LYS140 PRO141 CYS142 ALA143 PRO144 GLY145 THR146 PHE147 SER148 ASN149 THR150 THR151 SER152 SER153 THR154 ASP155 ILE156 CYS157 ARG158 PRO159 HIS160 GLN161 ILE162 CYS163 ASN164 VAL165 VAL166 ALA167 ILE168 PRO169 GLY170 ASN171 ALA172 SER173 MET174 ASP175 ALA176 VAL177 CYS178
Unit 12 THR17 CYS18 ARG19 LEU20 ARG21 GLU22 TYR23 TYR24 ASP25 GLN26 THR27 ALA28 GLN29 MET30 CYS31 CYS32 SER33 LYS34 CYS35 SER36 PRO37 GLY38 GLN39 HIS40 ALA41 LYS42 VAL43 PHE44 CYS45 THR46 LYS47 THR48 SER49 ASP50 THR51 VAL52 CYS53 ASP54 SER55 CYS56 GLU57 ASP58 SER59 THR60 TYR61 THR62 GLN63 LEU64 TRP65 ASN66 TRP67 VAL68 PRO69 GLU70 CYS71 LEU72 SER73 CYS74 GLY75 SER76 ARG77 CYS78 SER79 SER80 ASP81 GLN82 VAL83 GLU84 THR85 GLN86 ALA87 CYS88 THR89 ARG90 GLU91 GLN92 ASN93 ARG94 ILE95 CYS96 THR97 CYS98 ARG99 PRO100 GLY101 TRP102 TYR103 CYS104 ALA105 LEU106 SER107 LYS108 GLN109 GLU110 GLY111 CYS112 ARG113 LEU114 CYS115 ALA116 PRO117 LEU118 ARG119 LYS120 CYS121 ARG122 PRO123 GLY124 PHE125 GLY126 VAL127 ALA128 ARG129 PRO130 GLY131 THR132 GLU133 THR134 SER135 ASP136 VAL137 VAL138 CYS139 LYS140 PRO141 CYS142 ALA143 PRO144 GLY145 THR146 PHE147 SER148 ASN149 THR150 THR151 SER152 SER153 THR154 ASP155 ILE156 CYS157 ARG158 PRO159 HIS160 GLN161 ILE162 CYS163 ASN164 VAL165 VAL166 ALA167 ILE168 PRO169 GLY170 ASN171 ALA172 SER173 MET174 ASP175 ALA176 VAL177 CYS178
Ligands
Unit 13 CO2
Unit 14 CO1
Unit 15 CO3
Unit 16 CO4
Unit 17 CO5
Unit 18 CO6
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany