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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE GLUTAMINE TRANSAMIDOSOME FROM THERM MARITIMA IN THE GLUTAMYLATION STATE.
Keywords PROTEIN-RNA COMPLEX, LIGASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3AL0     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A  A 472 3672 0
2  Protein    B 482 3891 0
3  Protein   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C,LIN GLUTAMATE--TRNA LIGASE 2  C 564 4692 0
4  RNA    E 74 1581 0
5  Ligand    B 1 0 1
6  Ligand   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C,LIN GLUTAMATE--TRNA LIGASE 2  C 1 0 32
total       1594 13836 33
Proteins
Unit 1 LEU4 ASP5 PHE6 ARG7 LYS8 LEU9 THR10 ILE11 GLU12 GLU13 CYS14 LEU15 LYS16 LEU17 SER18 GLU19 GLU20 GLU21 ARG22 GLU23 LYS24 LEU25 PRO26 GLN27 LEU28 SER29 LEU30 GLU31 THR32 ILE33 LYS34 ARG35 LEU36 ASP37 PRO38 HIS39 VAL40 LYS41 ALA42 PHE43 ILE44 SER45 VAL46 ARG47 GLU48 ASN49 VAL50 SER51 VAL52 GLU53 LYS54 LYS55 GLY56 LYS57 PHE58 TRP59 GLY60 ILE61 PRO62 VAL63 ALA64 ILE65 LYS66 ASP67 ASN68 ILE69 LEU70 THR71 LEU72 GLY73 MET74 ARG75 THR76 THR77 CYS78 ALA79 SER80 ARG81 ILE82 LEU83 GLU84 ASN85 TYR86 GLU87 SER88 VAL89 PHE90 ASP91 ALA92 THR93 VAL94 VAL95 LYS96 LYS97 MET98 LYS99 GLU100 ALA101 GLY102 PHE103 VAL104 VAL105 VAL106 GLY107 LYS108 ALA109 ASN110 LEU111 ASP112 GLU113 PHE114 ALA115 MET116 GLY117 SER118 SER119 THR120 GLU121 ARG122 SER123 ALA124 PHE125 PHE126 PRO127 THR128 ARG129 ASN130 PRO131 TRP132 ASP133 LEU134 GLU135 ARG136 VAL137 PRO138 GLY139 GLY140 SER141 SER142 GLY143 GLY144 SER145 ALA146 ALA147 ALA148 VAL149 SER150 ALA151 GLY152 MET153 VAL154 VAL155 ALA156 ALA157 LEU158 GLY159 SER160 ASP161 THR162 GLY163 GLY164 SER165 VAL166 ARG167 GLN168 PRO169 ALA170 SER171 LEU172 CYS173 GLY174 VAL175 VAL176 GLY177 TYR178 LYS179 PRO180 THR181 TYR182 GLY183 LEU184 VAL185 SER186 ARG187 TYR188 GLY189 LEU190 VAL191 ALA192 PHE193 ALA194 SER195 SER196 LEU197 ASP198 GLN199 ILE200 GLY201 PRO202 ILE203 THR204 LYS205 THR206 VAL207 ARG208 ASP209 ALA210 ALA211 ILE212 LEU213 MET214 GLU215 ILE216 ILE217 SER218 GLY219 ARG220 ASP221 GLU222 ASN223 ASP224 ALA225 THR226 THR227 VAL228 ASN229 ARG230 LYS231 VAL232 ASP233 PHE234 LEU235 SER236 GLU237 ILE238 GLU239 GLU240 GLY241 VAL242 SER243 GLY244 MET245 LYS246 PHE247 ALA248 VAL249 PRO250 GLU251 GLU252 ILE253 TYR254 GLU255 HIS256 ASP257 ILE258 GLU259 GLU260 GLY261 VAL262 SER263 GLU264 ARG265 PHE266 GLU267 GLU268 ALA269 LEU270 LYS271 LEU272 LEU273 GLU274 ARG275 LEU276 GLY277 ALA278 LYS279 VAL280 GLU281 ARG282 VAL283 LYS284 ILE285 PRO286 HIS287 ILE288 LYS289 TYR290 SER291 VAL292 ALA293 THR294 TYR295 TYR296 VAL297 ILE298 ALA299 PRO300 ALA301 GLU302 ALA303 SER304 SER305 ASN306 LEU307 ALA308 ARG309 PHE310 ASP311 GLY312 VAL313 LYS314 TYR315 GLY316 LEU317 ARG318 ILE319 LYS320 GLU321 LYS322 GLY323 LEU324 ARG325 GLU326 MET327 TYR328 MET329 LYS330 THR331 ARG332 ASN333 VAL334 GLY335 PHE336 GLY337 GLU338 GLU339 VAL340 ARG341 ARG342 ARG343 ILE344 MET345 ILE346 GLY347 THR348 PHE349 THR350 LEU351 SER352 ALA353 ALA354 TYR355 TYR356 GLU357 ALA358 TYR359 PHE360 ASN361 LYS362 ALA363 MET364 LYS365 VAL366 ARG367 ARG368 LYS369 ILE370 SER371 ASP372 GLU373 LEU374 ASN375 GLU376 VAL377 LEU378 SER379 GLN380 TYR381 ASP382 ALA383 ILE384 LEU385 THR386 PRO387 THR388 SER389 PRO390 VAL391 THR392 ALA393 PHE394 LYS395 ILE396 GLY397 GLU398 ILE399 LYS400 ASP401 PRO402 LEU403 THR404 TYR405 TYR406 LEU407 MET408 ASP409 ILE410 PHE411 THR412 ILE413 PRO414 ALA415 ASN416 LEU417 ALA418 GLY419 LEU420 PRO421 ALA422 ILE423 SER424 VAL425 PRO426 PHE427 GLY428 PHE429 SER430 ASN431 ASN432 LEU433 PRO434 VAL435 GLY436 VAL437 GLN438 VAL439 ILE440 GLY441 ARG442 ARG443 PHE444 ALA445 ASP446 GLY447 LYS448 VAL449 PHE450 ARG451 ILE452 ALA453 ARG454 ALA455 ILE456 GLU457 LYS458 ASN459 SER460 PRO461 TYR462 ASN463 GLU464 ASN465 GLY466 MET467 PHE468 PRO469 LEU470 PRO471 GLU472 VAL473 LYS474 ALA475
Unit 2 MET1 ARG2 TYR3 ARG4 PRO5 VAL6 ILE7 GLY8 LEU9 GLU10 ILE11 HIS12 VAL13 GLN14 LEU15 SER16 THR17 LYS18 THR19 LYS20 ALA21 PHE22 CYS23 SER24 CYS25 PRO26 ALA27 ASP28 VAL29 PHE30 GLU31 LEU32 PRO33 PRO34 ASN35 THR36 ALA37 ILE38 CYS39 PRO40 VAL41 CYS42 THR43 GLY44 GLN45 PRO46 GLY47 ALA48 LEU49 PRO50 VAL51 PRO52 ASN53 GLU54 GLU55 MET56 ILE57 ARG58 PHE59 ALA60 VAL61 LYS62 THR63 ALA64 LEU65 ALA66 LEU67 ASN68 CYS69 LYS70 ILE71 HIS72 LYS73 TYR74 SER75 ARG76 PHE77 ASP78 ARG79 LYS80 ASN81 TYR82 PHE83 TYR84 PRO85 ASP86 LEU87 PRO88 LYS89 GLY90 TYR91 GLN92 ILE93 SER94 GLN95 TYR96 PHE97 TYR98 PRO99 ILE100 ALA101 THR102 GLU103 GLY104 PHE105 LEU106 GLU107 ILE108 ASP109 GLY110 ASP111 GLU112 GLY113 ARG114 LYS115 LYS116 VAL117 ARG118 ILE119 ARG120 ARG121 LEU122 HIS123 LEU124 GLU125 GLU126 ASP127 ALA128 GLY129 LYS130 LEU131 VAL132 HIS133 GLU134 GLY135 ASP136 SER137 ILE138 THR139 ARG140 ALA141 SER142 TYR143 SER144 LEU145 VAL146 ASP147 MET148 ASN149 ARG150 CYS151 GLY152 VAL153 PRO154 LEU155 ILE156 GLU157 ILE158 VAL159 THR160 GLU161 PRO162 ASP163 ILE164 SER165 SER166 PRO167 ARG168 GLU169 ALA170 ARG171 VAL172 PHE173 MET174 GLU175 LYS176 LEU177 ARG178 SER179 ILE180 VAL181 ARG182 TYR183 LEU184 GLY185 VAL186 SER187 THR188 GLY189 ASP190 MET191 GLU192 LYS193 GLY194 ALA195 LEU196 ARG197 CYS198 ASP199 ALA200 ASN201 ILE202 SER203 VAL204 VAL205 ASP206 THR207 GLU208 THR209 GLY210 ARG211 GLN212 SER213 ASN214 ARG215 VAL216 GLU217 VAL218 LYS219 ASN220 MET221 ASN222 SER223 PHE224 ARG225 PHE226 VAL227 GLU228 ARG229 ALA230 LEU231 GLU232 TYR233 GLU234 PHE235 GLU236 ARG237 ILE238 VAL239 LYS240 ALA241 MET242 GLU243 ARG244 GLY245 GLU246 ASP247 VAL248 GLU249 ARG250 GLU251 THR252 ARG253 GLY254 TRP255 ASP256 MET257 ALA258 THR259 LYS260 ILE261 THR262 VAL263 SER264 MET265 ARG266 GLY267 LYS268 GLU269 GLU270 GLU271 SER272 ASP273 TYR274 ARG275 TYR276 PHE277 PRO278 GLU279 PRO280 ASP281 ILE282 PRO283 PRO284 VAL285 VAL286 LEU287 SER288 ASP289 GLU290 TYR291 LEU292 GLU293 GLU294 VAL295 LYS296 LYS297 GLU298 LEU299 PRO300 GLU301 LEU302 PRO303 ASP304 GLU305 LYS306 ALA307 GLU308 ARG309 PHE310 MET311 ARG312 GLU313 TYR314 GLY315 LEU316 PRO317 GLU318 TYR319 ASP320 ALA321 LYS322 VAL323 LEU324 THR325 SER326 SER327 LYS328 GLU329 LEU330 ALA331 GLU332 PHE333 PHE334 GLU335 GLU336 CYS337 VAL338 LYS339 VAL340 VAL341 ASN342 ARG343 PRO344 LYS345 ASP346 LEU347 SER348 ASN349 TRP350 ILE351 MET352 THR353 GLU354 VAL355 LEU356 ARG357 GLU358 LEU359 ASN360 GLU361 ARG362 ASN363 ILE364 GLU365 ILE366 THR367 GLU368 SER369 LYS370 LEU371 THR372 PRO373 GLN374 HIS375 PHE376 ALA377 ASP378 LEU379 PHE380 LYS381 LEU382 MET383 ASP384 GLU385 GLY386 LYS387 ILE388 SER389 ILE390 LYS391 ILE392 ALA393 LYS394 GLU395 ILE396 PHE397 PRO398 GLU399 VAL400 PHE401 GLU402 THR403 GLY404 LYS405 MET406 PRO407 SER408 GLN409 ILE410 VAL411 GLU412 GLU413 LYS414 GLY415 LEU416 THR417 GLN418 ILE419 ASN420 ASP421 GLU422 LYS423 LEU424 ILE425 GLU426 GLU427 LEU428 VAL429 LYS430 LYS431 ALA432 MET433 GLU434 GLN435 ASN436 PRO437 LYS438 ALA439 VAL440 GLN441 ASP442 TYR443 LYS444 SER445 GLY446 LYS447 LYS448 LYS449 ALA450 ALA451 GLY452 PHE453 PHE454 VAL455 GLY456 TYR457 VAL458 MET459 ARG460 GLU461 THR462 LYS463 GLY464 LYS465 ALA466 ASN467 PRO468 GLU469 LEU470 THR471 ASN472 ARG473 ILE474 ILE475 GLN476 LYS477 LEU478 LEU479 GLU480 GLY481 GLU482
Unit 3 LYS3 VAL4 THR5 LYS6 ASP7 LEU8 VAL9 LEU10 HIS11 LEU12 GLU13 ASN14 LEU15 ALA16 ARG17 LEU18 GLU19 LEU20 SER21 GLU22 ASP23 GLN24 ARG25 GLU26 SER27 LEU28 MET29 LYS30 ASP31 PHE32 GLN33 GLU34 ILE35 LEU36 ASP37 TYR38 VAL39 GLU40 LEU41 LEU42 ASN43 GLU44 VAL45 ASP46 VAL47 GLU48 GLY49 VAL50 GLU51 PRO52 MET53 TYR54 THR55 PRO56 VAL57 GLU58 ASP59 SER60 ALA61 LYS62 LEU63 ARG64 LYS65 GLY66 ASP67 PRO68 ARG69 PHE70 PHE71 GLU72 MET73 ARG74 ASP75 LEU76 ILE77 LYS78 LYS79 ASN80 PHE81 PRO82 GLU83 GLU84 LYS85 ASP86 GLY87 HIS88 ILE89 LYS90 VAL91 PRO92 GLY93 ILE94 PRO119 LYS120 LYS121 ILE122 ARG123 ARG124 CYS125 PHE126 GLU127 LEU128 VAL129 ARG130 VAL131 ARG132 PHE133 ALA134 PRO135 SER136 PRO137 THR138 GLY139 HIS140 LEU141 HIS142 VAL143 GLY144 GLY145 ALA146 ARG147 THR148 ALA149 LEU150 PHE151 ASN152 TRP153 MET154 PHE155 ALA156 ARG157 LYS158 GLU159 GLY160 GLY161 LYS162 PHE163 ILE164 LEU165 ARG166 ILE167 GLU168 ASP169 THR170 ASP171 THR172 GLU173 ARG174 SER175 SER176 ARG177 GLU178 TYR179 GLU180 GLN181 GLN182 ILE183 LEU184 GLU185 SER186 LEU187 ARG188 TRP189 CYS190 GLY191 LEU192 ASP193 TRP194 ASP195 GLU196 GLY197 PRO198 ASP199 ILE200 GLY201 GLY202 ASP203 PHE204 GLY205 PRO206 TYR207 ARG208 GLN209 SER210 GLU211 ARG212 LEU213 GLU214 ILE215 TYR216 ARG217 GLU218 TYR219 ALA220 GLU221 LYS222 LEU223 VAL224 GLU225 ASP226 LYS227 ARG228 ALA229 TYR230 TYR231 VAL232 VAL233 TYR234 ASP235 LYS236 GLU237 ASP238 PRO239 SER240 LYS241 GLU242 LEU243 PHE244 THR245 THR246 TYR247 GLU248 TYR249 PRO250 HIS251 GLU252 TYR253 LYS254 GLU255 LYS256 GLY257 HIS258 PRO259 VAL260 THR261 ILE262 LYS263 PHE264 LYS265 VAL266 LEU267 PRO268 GLY269 LYS270 THR271 SER272 PHE273 GLU274 ASP275 LEU276 LEU277 LYS278 GLY279 TYR280 MET281 GLU282 PHE283 ASP284 ASN285 SER286 THR287 LEU288 GLU289 ASP290 PHE291 ILE292 ILE293 MET294 LYS295 SER296 ASN297 GLY298 PHE299 PRO300 THR301 TYR302 ASN303 PHE304 ALA305 VAL306 VAL307 VAL308 ASP309 ASP310 HIS311 LEU312 MET313 ARG314 ILE315 SER316 HIS317 VAL318 PHE319 ARG320 GLY321 GLU322 ASP323 HIS324 LEU325 SER326 ASN327 THR328 PRO329 LYS330 GLN331 LEU332 MET333 ILE334 TYR335 GLU336 ALA337 PHE338 GLY339 TRP340 GLU341 ALA342 PRO343 VAL344 PHE345 MET346 HIS347 ILE348 PRO349 LEU350 ILE351 LEU352 GLY353 SER354 ASP355 ARG356 THR357 PRO358 LEU359 SER360 LYS361 ARG362 HIS363 GLY364 ALA365 THR366 SER367 VAL368 GLU369 HIS370 PHE371 ARG372 ARG373 GLU374 GLY375 ILE376 LEU377 SER378 ARG379 ALA380 LEU381 MET382 ASN383 TYR384 LEU385 ALA386 LEU387 LEU388 GLY389 TRP390 ARG391 VAL392 GLU393 GLY394 ASP395 GLU396 ILE397 PHE398 THR399 ILE400 GLU401 GLU402 LYS403 LEU404 GLN405 SER406 PHE407 ASP408 PRO409 LYS410 ASP411 ILE412 SER413 ASN414 LYS415 GLY416 VAL417 ILE418 PHE419 ASP420 TYR421 GLN422 LYS423 LEU424 GLU425 TRP426 VAL427 ASN428 GLY429 LYS430 HIS431 MET432 ARG433 ARG434 ILE435 ASP436 LEU437 GLU438 ASP439 LEU440 LYS441 ARG442 GLU443 PHE444 ILE445 GLU446 TRP447 ALA448 LYS449 TYR450 ALA451 GLY452 LYS453 GLU454 ILE455 PRO456 SER457 VAL458 ASP459 GLU460 ARG461 TYR462 PHE463 SER464 GLU465 THR466 LEU467 ARG468 ILE469 CYS470 ARG471 GLU472 LYS473 VAL474 ASN475 THR476 LEU477 SER478 GLN479 LEU480 TYR481 ASP482 ILE483 MET484 TYR485 PRO486 PHE487 MET488 ASN489 ASP490 ASP491 TYR492 GLU493 TYR494 GLU495 LYS496 ASP497 TYR498 VAL499 GLU500 LYS501 PHE502 LEU503 LYS504 ARG505 GLU506 GLU507 ALA508 GLU509 ARG510 VAL511 LEU512 GLU513 GLU514 ALA515 LYS516 LYS517 ALA518 PHE519 LYS520 ASP521 LEU522 ASN523 SER524 TRP525 ASN526 MET527 GLU528 GLU529 ILE530 GLU531 LYS532 THR533 LEU534 ARG535 ASP536 LEU537 SER538 GLU539 LYS540 GLY541 LEU542 ALA543 SER544 LYS545 LYS546 VAL547 VAL548 PHE549 GLN550 LEU551 ILE552 ARG553 GLY554 ALA555 VAL556 THR557 GLY558 LYS559 LEU560 VAL561 THR562 PRO563 GLY564 LEU565 PHE566 GLU567 THR568 ILE569 GLU570 VAL571 LEU572 GLY573 LYS574 GLU575 ARG576 THR577 LEU578 LYS579 ARG580 LEU581 GLU582 ARG583 THR584 LEU585 GLN586 PHE587 LEU588 LYS589 LYS590
Nucleic acids
Unit 4 U1 G2 G3 G4 A5 G6 G7 U8 C9 G10 U11 C12 U13 A14 A15 C16 G18 G19 U20 A21 G22 G23 A24 C25 G26 G27 C28 G29 G30 A31 C32 U33 C34 U35 G36 G37 A38 U39 C40 C41 G42 C43 U44 G45 G46 U48 G49 G50 A51 G52 G53 U54 U55 C56 G57 A58 G59 U60 C61 C62 U63 C64 C65 C66 C67 U68 C69 C70 C71 A72 G73 C74 C75 A76
Ligands
Unit 5 ZN1001
Unit 6 GSU1001
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany