Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title REACTION INTERMEDIATE STRUCTURE OF ENTAMOEBA HISTOLYTICA MET GAMMA-LYASE 1 CONTAINING ALPHA-AMINO-ALPHA, BETA-BUTENOIC A PYRIDOXAL-5'-PHOSPHATE
Keywords GAMMA-LYASE, L-METHIONINE, ENTAMOEBA HISTOLYTICA, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3AEP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   METHIONINE GAMMA-LYASE  A 387 2949 0
2  Protein   METHIONINE GAMMA-LYASE  B 386 2934 0
3  Protein   METHIONINE GAMMA-LYASE  C 387 2949 0
4  Protein   METHIONINE GAMMA-LYASE  D 384 2920 0
5  Ligand   METHIONINE GAMMA-LYASE  A 4 0 35
6  Ligand   METHIONINE GAMMA-LYASE  B 2 0 27
7  Ligand   METHIONINE GAMMA-LYASE  C 4 0 35
8  Ligand   METHIONINE GAMMA-LYASE  D 2 0 27
9 Water     694 0 694
total       2250 11752 818
Proteins
Unit 1 ALA3 GLN4 ASP5 ILE6 THR7 THR8 THR9 LEU10 LEU11 HIS12 PRO13 LYS14 GLY15 ASP16 HIS17 VAL18 LEU19 HIS20 SER21 HIS22 ALA23 TYR24 PRO25 ILE26 PHE27 GLN28 THR29 SER30 THR31 PHE32 CYS33 PHE34 ASP35 SER36 THR37 GLN38 GLN39 GLY40 ALA41 ASP42 LEU43 PHE44 MET45 GLY46 LYS47 GLY48 GLU49 GLY50 HIS51 ILE52 TYR53 SER54 ARG55 LEU56 GLY57 ASN58 PRO59 THR60 VAL61 GLU62 GLN63 PHE64 GLU65 GLU66 MET67 VAL68 CYS69 SER70 ILE71 GLU72 GLY73 ALA74 ALA75 GLY76 SER77 ALA78 ALA79 PHE80 GLY81 SER82 GLY83 MET84 GLY85 ALA86 ILE87 SER88 SER89 SER90 THR91 LEU92 ALA93 PHE94 LEU95 GLN96 LYS97 GLY98 ASP99 HIS100 LEU101 ILE102 ALA103 GLY104 ASP105 THR106 LEU107 TYR108 GLY109 CYS110 THR111 VAL112 SER113 LEU114 PHE115 THR116 HIS117 TRP118 LEU119 PRO120 ARG121 PHE122 GLY123 ILE124 GLU125 VAL126 ASP127 LEU128 ILE129 ASP130 THR131 SER132 ASP133 VAL134 GLU135 LYS136 VAL137 LYS138 ALA139 ALA140 TRP141 LYS142 PRO143 ASN144 THR145 LYS146 MET147 VAL148 TYR149 LEU150 GLU151 SER152 PRO153 ALA154 ASN155 PRO156 THR157 CYS158 LYS159 VAL160 SER161 ASP162 ILE163 LYS164 GLY165 ILE166 ALA167 VAL168 VAL169 CYS170 HIS171 GLU172 ARG173 GLY174 ALA175 ARG176 LEU177 VAL178 VAL179 ASP180 ALA181 THR182 PHE183 THR184 SER185 PRO186 CYS187 PHE188 LEU189 LYS190 PRO191 LEU192 GLU193 LEU194 GLY195 ALA196 ASP197 ILE198 ALA199 LEU200 HIS201 SER202 VAL203 SER204 LYS205 TYR206 ILE207 ASN208 GLY209 HIS210 GLY211 ASP212 VAL213 ILE214 GLY215 GLY216 VAL217 SER218 SER219 ALA220 LYS221 THR222 ALA223 GLU224 ASP225 ILE226 ALA227 THR228 ILE229 LYS230 PHE231 TYR232 ARG233 LYS234 ASP235 ALA236 GLY237 SER238 LEU239 MET240 ALA241 PRO242 MET243 ASP244 ALA245 PHE246 LEU247 CYS248 ALA249 ARG250 GLY251 MET252 LYS253 THR254 LEU255 PRO256 ILE257 ARG258 MET259 GLN260 ILE261 HIS262 MET263 GLU264 ASN265 GLY266 LEU267 LYS268 VAL269 ALA270 LYS271 PHE272 LEU273 GLU274 GLN275 HIS276 GLU277 LYS278 ILE279 VAL280 LYS281 VAL282 ASN283 HIS284 PRO285 GLY286 LEU287 GLU288 SER289 PHE290 PRO291 GLY292 HIS293 ASP294 ILE295 ALA296 LYS297 LYS298 GLN299 MET300 THR301 GLY302 TYR303 GLY304 SER305 THR306 PHE307 LEU308 PHE309 GLU310 MET311 LYS312 SER313 PHE314 GLU315 ALA316 ALA317 LYS318 LYS319 LEU320 MET321 GLU322 HIS323 LEU324 LYS325 VAL326 CYS327 THR328 LEU329 ALA330 VAL331 SER332 LEU333 GLY334 CYS335 VAL336 ASP337 THR338 LEU339 ILE340 GLU341 HIS342 PRO343 ALA344 SER345 MET346 THR347 HIS348 ALA349 ALA350 VAL351 PRO352 GLU353 ASN354 ILE355 MET356 ARG357 LYS358 GLN359 GLY360 ILE361 THR362 PRO363 GLU364 LEU365 VAL366 ARG367 ILE368 SER369 VAL370 GLY371 ILE372 GLU373 ASN374 VAL375 ASP376 ASP377 ILE378 ILE379 ALA380 ASP381 LEU382 LYS383 GLN384 ALA385 LEU386 GLU387 LEU388 TRP389
Unit 2 ALA503 GLN504 ASP505 ILE506 THR507 THR508 THR509 LEU510 LEU511 HIS512 PRO513 LYS514 GLY515 ASP516 HIS517 VAL518 LEU519 HIS520 SER521 HIS522 ALA523 TYR524 PRO525 ILE526 PHE527 GLN528 THR529 SER530 THR531 PHE532 CYS533 PHE534 ASP535 SER536 THR537 GLN538 GLN539 GLY540 ALA541 ASP542 LEU543 PHE544 MET545 GLY546 LYS547 GLY548 GLU549 GLY550 HIS551 ILE552 TYR553 SER554 ARG555 LEU556 GLY557 ASN558 PRO559 THR560 VAL561 GLU562 GLN563 PHE564 GLU565 GLU566 MET567 VAL568 CYS569 SER570 ILE571 GLU572 GLY573 ALA574 ALA575 GLY576 SER577 ALA578 ALA579 PHE580 GLY581 SER582 GLY583 MET584 GLY585 ALA586 ILE587 SER588 SER589 SER590 THR591 LEU592 ALA593 PHE594 LEU595 GLN596 LYS597 GLY598 ASP599 HIS600 LEU601 ILE602 ALA603 GLY604 ASP605 THR606 LEU607 TYR608 GLY609 CYS610 THR611 VAL612 SER613 LEU614 PHE615 THR616 HIS617 TRP618 LEU619 PRO620 ARG621 PHE622 GLY623 ILE624 GLU625 VAL626 ASP627 LEU628 ILE629 ASP630 THR631 SER632 ASP633 VAL634 GLU635 LYS636 VAL637 LYS638 ALA639 ALA640 TRP641 LYS642 PRO643 ASN644 THR645 LYS646 MET647 VAL648 TYR649 LEU650 GLU651 SER652 PRO653 ALA654 ASN655 PRO656 THR657 CYS658 LYS659 VAL660 SER661 ASP662 ILE663 LYS664 GLY665 ILE666 ALA667 VAL668 VAL669 CYS670 HIS671 GLU672 ARG673 GLY674 ALA675 ARG676 LEU677 VAL678 VAL679 ASP680 ALA681 THR682 PHE683 THR684 SER685 PRO686 CYS687 PHE688 LEU689 LYS690 PRO691 LEU692 GLU693 LEU694 GLY695 ALA696 ASP697 ILE698 ALA699 LEU700 HIS701 SER702 VAL703 SER704 LYS705 TYR706 ILE707 ASN708 GLY709 HIS710 GLY711 ASP712 VAL713 ILE714 GLY715 GLY716 VAL717 SER718 SER719 ALA720 LYS721 THR722 ALA723 GLU724 ASP725 ILE726 ALA727 THR728 ILE729 LYS730 PHE731 TYR732 ARG733 LYS734 ASP735 ALA736 GLY737 SER738 LEU739 MET740 ALA741 PRO742 MET743 ASP744 ALA745 PHE746 LEU747 CYS748 ALA749 ARG750 GLY751 MET752 LYS753 THR754 LEU755 PRO756 ILE757 ARG758 MET759 GLN760 ILE761 HIS762 MET763 GLU764 ASN765 GLY766 LEU767 LYS768 VAL769 ALA770 LYS771 PHE772 LEU773 GLU774 GLN775 HIS776 GLU777 LYS778 ILE779 VAL780 LYS781 VAL782 ASN783 HIS784 PRO785 GLY786 LEU787 GLU788 SER789 PHE790 PRO791 GLY792 HIS793 ASP794 ILE795 ALA796 LYS797 LYS798 GLN799 MET800 THR801 GLY802 TYR803 GLY804 SER805 THR806 PHE807 LEU808 PHE809 GLU810 MET811 LYS812 SER813 PHE814 GLU815 ALA816 ALA817 LYS818 LYS819 LEU820 MET821 GLU822 HIS823 LEU824 LYS825 VAL826 CYS827 THR828 LEU829 ALA830 VAL831 SER832 LEU833 GLY834 CYS835 VAL836 ASP837 THR838 LEU839 ILE840 GLU841 HIS842 PRO843 ALA844 SER845 MET846 THR847 HIS848 ALA849 ALA850 VAL851 PRO852 GLU853 ASN854 ILE855 MET856 ARG857 LYS858 GLN859 GLY860 ILE861 THR862 PRO863 GLU864 LEU865 VAL866 ARG867 ILE868 SER869 VAL870 GLY871 ILE872 GLU873 ASN874 VAL875 ASP876 ASP877 ILE878 ILE879 ALA880 ASP881 LEU882 LYS883 GLN884 ALA885 LEU886 GLU887 LEU888
Unit 3 ALA1003 GLN1004 ASP1005 ILE1006 THR1007 THR1008 THR1009 LEU1010 LEU1011 HIS1012 PRO1013 LYS1014 GLY1015 ASP1016 HIS1017 VAL1018 LEU1019 HIS1020 SER1021 HIS1022 ALA1023 TYR1024 PRO1025 ILE1026 PHE1027 GLN1028 THR1029 SER1030 THR1031 PHE1032 CYS1033 PHE1034 ASP1035 SER1036 THR1037 GLN1038 GLN1039 GLY1040 ALA1041 ASP1042 LEU1043 PHE1044 MET1045 GLY1046 LYS1047 GLY1048 GLU1049 GLY1050 HIS1051 ILE1052 TYR1053 SER1054 ARG1055 LEU1056 GLY1057 ASN1058 PRO1059 THR1060 VAL1061 GLU1062 GLN1063 PHE1064 GLU1065 GLU1066 MET1067 VAL1068 CYS1069 SER1070 ILE1071 GLU1072 GLY1073 ALA1074 ALA1075 GLY1076 SER1077 ALA1078 ALA1079 PHE1080 GLY1081 SER1082 GLY1083 MET1084 GLY1085 ALA1086 ILE1087 SER1088 SER1089 SER1090 THR1091 LEU1092 ALA1093 PHE1094 LEU1095 GLN1096 LYS1097 GLY1098 ASP1099 HIS1100 LEU1101 ILE1102 ALA1103 GLY1104 ASP1105 THR1106 LEU1107 TYR1108 GLY1109 CYS1110 THR1111 VAL1112 SER1113 LEU1114 PHE1115 THR1116 HIS1117 TRP1118 LEU1119 PRO1120 ARG1121 PHE1122 GLY1123 ILE1124 GLU1125 VAL1126 ASP1127 LEU1128 ILE1129 ASP1130 THR1131 SER1132 ASP1133 VAL1134 GLU1135 LYS1136 VAL1137 LYS1138 ALA1139 ALA1140 TRP1141 LYS1142 PRO1143 ASN1144 THR1145 LYS1146 MET1147 VAL1148 TYR1149 LEU1150 GLU1151 SER1152 PRO1153 ALA1154 ASN1155 PRO1156 THR1157 CYS1158 LYS1159 VAL1160 SER1161 ASP1162 ILE1163 LYS1164 GLY1165 ILE1166 ALA1167 VAL1168 VAL1169 CYS1170 HIS1171 GLU1172 ARG1173 GLY1174 ALA1175 ARG1176 LEU1177 VAL1178 VAL1179 ASP1180 ALA1181 THR1182 PHE1183 THR1184 SER1185 PRO1186 CYS1187 PHE1188 LEU1189 LYS1190 PRO1191 LEU1192 GLU1193 LEU1194 GLY1195 ALA1196 ASP1197 ILE1198 ALA1199 LEU1200 HIS1201 SER1202 VAL1203 SER1204 LYS1205 TYR1206 ILE1207 ASN1208 GLY1209 HIS1210 GLY1211 ASP1212 VAL1213 ILE1214 GLY1215 GLY1216 VAL1217 SER1218 SER1219 ALA1220 LYS1221 THR1222 ALA1223 GLU1224 ASP1225 ILE1226 ALA1227 THR1228 ILE1229 LYS1230 PHE1231 TYR1232 ARG1233 LYS1234 ASP1235 ALA1236 GLY1237 SER1238 LEU1239 MET1240 ALA1241 PRO1242 MET1243 ASP1244 ALA1245 PHE1246 LEU1247 CYS1248 ALA1249 ARG1250 GLY1251 MET1252 LYS1253 THR1254 LEU1255 PRO1256 ILE1257 ARG1258 MET1259 GLN1260 ILE1261 HIS1262 MET1263 GLU1264 ASN1265 GLY1266 LEU1267 LYS1268 VAL1269 ALA1270 LYS1271 PHE1272 LEU1273 GLU1274 GLN1275 HIS1276 GLU1277 LYS1278 ILE1279 VAL1280 LYS1281 VAL1282 ASN1283 HIS1284 PRO1285 GLY1286 LEU1287 GLU1288 SER1289 PHE1290 PRO1291 GLY1292 HIS1293 ASP1294 ILE1295 ALA1296 LYS1297 LYS1298 GLN1299 MET1300 THR1301 GLY1302 TYR1303 GLY1304 SER1305 THR1306 PHE1307 LEU1308 PHE1309 GLU1310 MET1311 LYS1312 SER1313 PHE1314 GLU1315 ALA1316 ALA1317 LYS1318 LYS1319 LEU1320 MET1321 GLU1322 HIS1323 LEU1324 LYS1325 VAL1326 CYS1327 THR1328 LEU1329 ALA1330 VAL1331 SER1332 LEU1333 GLY1334 CYS1335 VAL1336 ASP1337 THR1338 LEU1339 ILE1340 GLU1341 HIS1342 PRO1343 ALA1344 SER1345 MET1346 THR1347 HIS1348 ALA1349 ALA1350 VAL1351 PRO1352 GLU1353 ASN1354 ILE1355 MET1356 ARG1357 LYS1358 GLN1359 GLY1360 ILE1361 THR1362 PRO1363 GLU1364 LEU1365 VAL1366 ARG1367 ILE1368 SER1369 VAL1370 GLY1371 ILE1372 GLU1373 ASN1374 VAL1375 ASP1376 ASP1377 ILE1378 ILE1379 ALA1380 ASP1381 LEU1382 LYS1383 GLN1384 ALA1385 LEU1386 GLU1387 LEU1388 TRP1389
Unit 4 ASP1505 ILE1506 THR1507 THR1508 THR1509 LEU1510 LEU1511 HIS1512 PRO1513 LYS1514 GLY1515 ASP1516 HIS1517 VAL1518 LEU1519 HIS1520 SER1521 HIS1522 ALA1523 TYR1524 PRO1525 ILE1526 PHE1527 GLN1528 THR1529 SER1530 THR1531 PHE1532 CYS1533 PHE1534 ASP1535 SER1536 THR1537 GLN1538 GLN1539 GLY1540 ALA1541 ASP1542 LEU1543 PHE1544 MET1545 GLY1546 LYS1547 GLY1548 GLU1549 GLY1550 HIS1551 ILE1552 TYR1553 SER1554 ARG1555 LEU1556 GLY1557 ASN1558 PRO1559 THR1560 VAL1561 GLU1562 GLN1563 PHE1564 GLU1565 GLU1566 MET1567 VAL1568 CYS1569 SER1570 ILE1571 GLU1572 GLY1573 ALA1574 ALA1575 GLY1576 SER1577 ALA1578 ALA1579 PHE1580 GLY1581 SER1582 GLY1583 MET1584 GLY1585 ALA1586 ILE1587 SER1588 SER1589 SER1590 THR1591 LEU1592 ALA1593 PHE1594 LEU1595 GLN1596 LYS1597 GLY1598 ASP1599 HIS1600 LEU1601 ILE1602 ALA1603 GLY1604 ASP1605 THR1606 LEU1607 TYR1608 GLY1609 CYS1610 THR1611 VAL1612 SER1613 LEU1614 PHE1615 THR1616 HIS1617 TRP1618 LEU1619 PRO1620 ARG1621 PHE1622 GLY1623 ILE1624 GLU1625 VAL1626 ASP1627 LEU1628 ILE1629 ASP1630 THR1631 SER1632 ASP1633 VAL1634 GLU1635 LYS1636 VAL1637 LYS1638 ALA1639 ALA1640 TRP1641 LYS1642 PRO1643 ASN1644 THR1645 LYS1646 MET1647 VAL1648 TYR1649 LEU1650 GLU1651 SER1652 PRO1653 ALA1654 ASN1655 PRO1656 THR1657 CYS1658 LYS1659 VAL1660 SER1661 ASP1662 ILE1663 LYS1664 GLY1665 ILE1666 ALA1667 VAL1668 VAL1669 CYS1670 HIS1671 GLU1672 ARG1673 GLY1674 ALA1675 ARG1676 LEU1677 VAL1678 VAL1679 ASP1680 ALA1681 THR1682 PHE1683 THR1684 SER1685 PRO1686 CYS1687 PHE1688 LEU1689 LYS1690 PRO1691 LEU1692 GLU1693 LEU1694 GLY1695 ALA1696 ASP1697 ILE1698 ALA1699 LEU1700 HIS1701 SER1702 VAL1703 SER1704 LYS1705 TYR1706 ILE1707 ASN1708 GLY1709 HIS1710 GLY1711 ASP1712 VAL1713 ILE1714 GLY1715 GLY1716 VAL1717 SER1718 SER1719 ALA1720 LYS1721 THR1722 ALA1723 GLU1724 ASP1725 ILE1726 ALA1727 THR1728 ILE1729 LYS1730 PHE1731 TYR1732 ARG1733 LYS1734 ASP1735 ALA1736 GLY1737 SER1738 LEU1739 MET1740 ALA1741 PRO1742 MET1743 ASP1744 ALA1745 PHE1746 LEU1747 CYS1748 ALA1749 ARG1750 GLY1751 MET1752 LYS1753 THR1754 LEU1755 PRO1756 ILE1757 ARG1758 MET1759 GLN1760 ILE1761 HIS1762 MET1763 GLU1764 ASN1765 GLY1766 LEU1767 LYS1768 VAL1769 ALA1770 LYS1771 PHE1772 LEU1773 GLU1774 GLN1775 HIS1776 GLU1777 LYS1778 ILE1779 VAL1780 LYS1781 VAL1782 ASN1783 HIS1784 PRO1785 GLY1786 LEU1787 GLU1788 SER1789 PHE1790 PRO1791 GLY1792 HIS1793 ASP1794 ILE1795 ALA1796 LYS1797 LYS1798 GLN1799 MET1800 THR1801 GLY1802 TYR1803 GLY1804 SER1805 THR1806 PHE1807 LEU1808 PHE1809 GLU1810 MET1811 LYS1812 SER1813 PHE1814 GLU1815 ALA1816 ALA1817 LYS1818 LYS1819 LEU1820 MET1821 GLU1822 HIS1823 LEU1824 LYS1825 VAL1826 CYS1827 THR1828 LEU1829 ALA1830 VAL1831 SER1832 LEU1833 GLY1834 CYS1835 VAL1836 ASP1837 THR1838 LEU1839 ILE1840 GLU1841 HIS1842 PRO1843 ALA1844 SER1845 MET1846 THR1847 HIS1848 ALA1849 ALA1850 VAL1851 PRO1852 GLU1853 ASN1854 ILE1855 MET1856 ARG1857 LYS1858 GLN1859 GLY1860 ILE1861 THR1862 PRO1863 GLU1864 LEU1865 VAL1866 ARG1867 ILE1868 SER1869 VAL1870 GLY1871 ILE1872 GLU1873 ASN1874 VAL1875 ASP1876 ASP1877 ILE1878 ILE1879 ALA1880 ASP1881 LEU1882 LYS1883 GLN1884 ALA1885 LEU1886 GLU1887 LEU1888
Ligands
Unit 5 4LM2001 MEE2002 SO42007 GOL2011
Unit 6 4LM2003 SO42008
Unit 7 4LM2004 MEE2005 SO42009 GOL2012
Unit 8 4LM2006 SO42010
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany