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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURE OF BACILLUS PALLIDUS D-ARABINOSE ISOMERASE C WITH L-FUCITOL
Keywords ROSSMANN FOLD, BETE BARREL, CARBOHYDRATE METABOLISM, CYTOPLA FUCOSE METABOLISM, ISOMERASE, MANGANESE, METAL-BINDING
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3A9T     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   D-ARABINOSE ISOMERASE  A 589 4604 0
2  Protein   D-ARABINOSE ISOMERASE  B 589 4604 0
3  Protein   D-ARABINOSE ISOMERASE  C 589 4604 0
4  Ligand   D-ARABINOSE ISOMERASE  A 3 0 13
5  Ligand   D-ARABINOSE ISOMERASE  B 3 0 13
6  Ligand   D-ARABINOSE ISOMERASE  C 3 0 13
7 Water     1167 0 1167
total       2943 13812 1206

Proteins
Unit 1 ALA2 LYS3 ASP4 PRO5 ARG6 TYR7 VAL8 GLY9 ASN10 LEU11 PRO12 LYS13 ILE14 GLY15 ILE16 ARG17 PRO18 THR19 ILE20 ASP21 GLY22 ARG23 ARG24 LYS25 GLY26 VAL27 ARG28 GLU29 SER30 LEU31 GLU32 GLU33 THR34 THR35 MET36 ASN37 MET38 ALA39 LYS40 ALA41 VAL42 ALA43 LYS44 LEU45 LEU46 GLU47 GLU48 ASN49 VAL50 PHE51 TYR52 TYR53 ASN54 GLY55 GLN56 PRO57 VAL58 GLU59 CYS60 VAL61 ILE62 ALA63 ASP64 THR65 CYS66 ILE67 GLY68 GLY69 VAL70 LYS71 GLU72 ALA73 ALA74 GLU75 ALA76 ALA77 GLU78 LYS79 PHE80 ALA81 ARG82 GLU83 GLY84 VAL85 GLY86 VAL87 SER88 ILE89 THR90 VAL91 THR92 PRO93 CYS94 TRP95 CYS96 TYR97 GLY98 THR99 GLU100 THR101 MET102 ASP103 MET104 ASP105 PRO106 HIS107 ILE108 PRO109 LYS110 ALA111 VAL112 TRP113 GLY114 PHE115 ASN116 GLY117 THR118 GLU119 ARG120 PRO121 GLY122 ALA123 VAL124 TYR125 LEU126 ALA127 ALA128 VAL129 LEU130 ALA131 GLY132 TYR133 ASN134 GLN135 LYS136 GLY137 LEU138 PRO139 ALA140 PHE141 GLY142 ILE143 TYR144 GLY145 LYS146 ASP147 VAL148 GLN149 ASP150 ALA151 GLY152 ASP153 THR154 ASN155 ILE156 PRO157 GLU158 ASP159 VAL160 LYS161 GLU162 LYS163 LEU164 ILE165 ARG166 PHE167 ALA168 LYS169 ALA170 GLY171 LEU172 ALA173 VAL174 ALA175 MET176 MET177 LYS178 GLY179 LYS180 SER181 TYR182 LEU183 SER184 ILE185 GLY186 SER187 VAL188 SER189 MET190 GLY191 ILE192 ALA193 GLY194 SER195 VAL196 VAL197 GLN198 GLU199 ASP200 PHE201 PHE202 GLN203 ASN204 TYR205 LEU206 GLY207 MET208 ARG209 ASN210 GLU211 TYR212 VAL213 ASP214 MET215 SER216 GLU217 PHE218 VAL219 ARG220 ARG221 ILE222 GLU223 LEU224 GLY225 ILE226 TYR227 ASP228 LYS229 GLU230 GLU231 TYR232 GLU233 ARG234 ALA235 LEU236 LYS237 TRP238 VAL239 LYS240 GLU241 ASN242 CYS243 LYS244 VAL245 GLY246 PRO247 ASP248 ASN249 ASN250 ARG251 ASP252 GLY253 PHE254 LYS255 ARG256 THR257 GLU258 GLU259 GLN260 LYS261 GLU262 LYS263 ASP264 TRP265 GLU266 ILE267 SER268 VAL269 LYS270 MET271 ALA272 LEU273 ILE274 ALA275 ARG276 ASP277 LEU278 MET279 VAL280 GLY281 ASN282 LYS283 LYS284 LEU285 GLU286 GLU287 MET288 GLY289 TYR290 GLY291 GLU292 GLU293 ALA294 LEU295 GLY296 ARG297 ASN298 ALA299 ILE300 VAL301 ALA302 GLY303 PHE304 GLN305 GLY306 GLN307 ARG308 GLN309 TRP310 THR311 ASP312 TYR313 PHE314 PRO315 ASN316 GLY317 ASP318 PHE319 MET320 GLU321 THR322 ILE323 LEU324 ASN325 SER326 SER327 PHE328 ASP329 TRP330 ASN331 GLY332 LYS333 ARG334 ALA335 PRO336 TYR337 ILE338 PHE339 ALA340 THR341 GLU342 ASN343 ASP344 ASN345 LEU346 ASN347 GLY348 ILE349 SER350 MET351 LEU352 PHE353 GLY354 TYR355 LEU356 LEU357 THR358 ASN359 THR360 ALA361 GLN362 ILE363 PHE364 ALA365 ASP366 VAL367 ARG368 THR369 TYR370 TRP371 SER372 PRO373 GLU374 ALA375 VAL376 LYS377 ARG378 VAL379 THR380 GLY381 TYR382 THR383 LEU384 GLU385 GLY386 ARG387 ALA388 ALA389 ASN390 GLY391 ILE392 ILE393 HIS394 LEU395 ILE396 ASN397 SER398 GLY399 ALA400 ALA401 ALA402 LEU403 ASP404 GLY405 THR406 GLY407 GLU408 GLN409 THR410 LYS411 ASP412 GLY413 LYS414 PRO415 VAL416 ILE417 LYS418 PRO419 TYR420 TYR421 GLU422 LEU423 THR424 ASP425 GLU426 ASP427 ILE428 LYS429 LYS430 CYS431 LEU432 GLU433 ALA434 THR435 GLN436 PHE437 ARG438 PRO439 ALA440 SER441 THR442 GLU443 TYR444 PHE445 ARG446 GLY447 GLY448 GLY449 TYR450 SER451 THR452 ASP453 PHE454 LEU455 THR456 LYS457 GLY458 GLY459 MET460 PRO461 VAL462 THR463 ILE464 SER465 ARG466 LEU467 ASN468 ILE469 VAL470 LYS471 GLY472 LEU473 GLY474 PRO475 VAL476 LEU477 GLN478 ILE479 ALA480 GLU481 GLY482 TYR483 THR484 VAL485 ASP486 LEU487 PRO488 GLU489 GLU490 VAL491 HIS492 ASP493 VAL494 LEU495 ASP496 LYS497 ARG498 THR499 ASP500 PRO501 THR502 TRP503 PRO504 THR505 THR506 TRP507 PHE508 VAL509 PRO510 ASN511 LEU512 THR513 GLY514 GLU515 GLY516 ALA517 PHE518 LYS519 ASP520 VAL521 TYR522 SER523 VAL524 MET525 ASN526 ASN527 TRP528 GLY529 ALA530 ASN531 HIS532 CYS533 SER534 ILE535 SER536 TYR537 GLY538 HIS539 ILE540 GLY541 ALA542 ASP543 LEU544 ILE545 THR546 LEU547 ALA548 SER549 ILE550 LEU551 ARG552 ILE553 PRO554 VAL555 ASN556 MET557 HIS558 ASN559 VAL560 PRO561 GLU562 GLU563 LYS564 ILE565 PHE566 ARG567 PRO568 ASP569 ALA570 TRP571 SER572 MET573 PHE574 GLY575 THR576 LYS577 ASP578 LEU579 GLU580 GLY581 ALA582 ASP583 TYR584 ARG585 ALA586 CYS587 LYS588 LYS589 LEU590
Unit 2 ALA2 LYS3 ASP4 PRO5 ARG6 TYR7 VAL8 GLY9 ASN10 LEU11 PRO12 LYS13 ILE14 GLY15 ILE16 ARG17 PRO18 THR19 ILE20 ASP21 GLY22 ARG23 ARG24 LYS25 GLY26 VAL27 ARG28 GLU29 SER30 LEU31 GLU32 GLU33 THR34 THR35 MET36 ASN37 MET38 ALA39 LYS40 ALA41 VAL42 ALA43 LYS44 LEU45 LEU46 GLU47 GLU48 ASN49 VAL50 PHE51 TYR52 TYR53 ASN54 GLY55 GLN56 PRO57 VAL58 GLU59 CYS60 VAL61 ILE62 ALA63 ASP64 THR65 CYS66 ILE67 GLY68 GLY69 VAL70 LYS71 GLU72 ALA73 ALA74 GLU75 ALA76 ALA77 GLU78 LYS79 PHE80 ALA81 ARG82 GLU83 GLY84 VAL85 GLY86 VAL87 SER88 ILE89 THR90 VAL91 THR92 PRO93 CYS94 TRP95 CYS96 TYR97 GLY98 THR99 GLU100 THR101 MET102 ASP103 MET104 ASP105 PRO106 HIS107 ILE108 PRO109 LYS110 ALA111 VAL112 TRP113 GLY114 PHE115 ASN116 GLY117 THR118 GLU119 ARG120 PRO121 GLY122 ALA123 VAL124 TYR125 LEU126 ALA127 ALA128 VAL129 LEU130 ALA131 GLY132 TYR133 ASN134 GLN135 LYS136 GLY137 LEU138 PRO139 ALA140 PHE141 GLY142 ILE143 TYR144 GLY145 LYS146 ASP147 VAL148 GLN149 ASP150 ALA151 GLY152 ASP153 THR154 ASN155 ILE156 PRO157 GLU158 ASP159 VAL160 LYS161 GLU162 LYS163 LEU164 ILE165 ARG166 PHE167 ALA168 LYS169 ALA170 GLY171 LEU172 ALA173 VAL174 ALA175 MET176 MET177 LYS178 GLY179 LYS180 SER181 TYR182 LEU183 SER184 ILE185 GLY186 SER187 VAL188 SER189 MET190 GLY191 ILE192 ALA193 GLY194 SER195 VAL196 VAL197 GLN198 GLU199 ASP200 PHE201 PHE202 GLN203 ASN204 TYR205 LEU206 GLY207 MET208 ARG209 ASN210 GLU211 TYR212 VAL213 ASP214 MET215 SER216 GLU217 PHE218 VAL219 ARG220 ARG221 ILE222 GLU223 LEU224 GLY225 ILE226 TYR227 ASP228 LYS229 GLU230 GLU231 TYR232 GLU233 ARG234 ALA235 LEU236 LYS237 TRP238 VAL239 LYS240 GLU241 ASN242 CYS243 LYS244 VAL245 GLY246 PRO247 ASP248 ASN249 ASN250 ARG251 ASP252 GLY253 PHE254 LYS255 ARG256 THR257 GLU258 GLU259 GLN260 LYS261 GLU262 LYS263 ASP264 TRP265 GLU266 ILE267 SER268 VAL269 LYS270 MET271 ALA272 LEU273 ILE274 ALA275 ARG276 ASP277 LEU278 MET279 VAL280 GLY281 ASN282 LYS283 LYS284 LEU285 GLU286 GLU287 MET288 GLY289 TYR290 GLY291 GLU292 GLU293 ALA294 LEU295 GLY296 ARG297 ASN298 ALA299 ILE300 VAL301 ALA302 GLY303 PHE304 GLN305 GLY306 GLN307 ARG308 GLN309 TRP310 THR311 ASP312 TYR313 PHE314 PRO315 ASN316 GLY317 ASP318 PHE319 MET320 GLU321 THR322 ILE323 LEU324 ASN325 SER326 SER327 PHE328 ASP329 TRP330 ASN331 GLY332 LYS333 ARG334 ALA335 PRO336 TYR337 ILE338 PHE339 ALA340 THR341 GLU342 ASN343 ASP344 ASN345 LEU346 ASN347 GLY348 ILE349 SER350 MET351 LEU352 PHE353 GLY354 TYR355 LEU356 LEU357 THR358 ASN359 THR360 ALA361 GLN362 ILE363 PHE364 ALA365 ASP366 VAL367 ARG368 THR369 TYR370 TRP371 SER372 PRO373 GLU374 ALA375 VAL376 LYS377 ARG378 VAL379 THR380 GLY381 TYR382 THR383 LEU384 GLU385 GLY386 ARG387 ALA388 ALA389 ASN390 GLY391 ILE392 ILE393 HIS394 LEU395 ILE396 ASN397 SER398 GLY399 ALA400 ALA401 ALA402 LEU403 ASP404 GLY405 THR406 GLY407 GLU408 GLN409 THR410 LYS411 ASP412 GLY413 LYS414 PRO415 VAL416 ILE417 LYS418 PRO419 TYR420 TYR421 GLU422 LEU423 THR424 ASP425 GLU426 ASP427 ILE428 LYS429 LYS430 CYS431 LEU432 GLU433 ALA434 THR435 GLN436 PHE437 ARG438 PRO439 ALA440 SER441 THR442 GLU443 TYR444 PHE445 ARG446 GLY447 GLY448 GLY449 TYR450 SER451 THR452 ASP453 PHE454 LEU455 THR456 LYS457 GLY458 GLY459 MET460 PRO461 VAL462 THR463 ILE464 SER465 ARG466 LEU467 ASN468 ILE469 VAL470 LYS471 GLY472 LEU473 GLY474 PRO475 VAL476 LEU477 GLN478 ILE479 ALA480 GLU481 GLY482 TYR483 THR484 VAL485 ASP486 LEU487 PRO488 GLU489 GLU490 VAL491 HIS492 ASP493 VAL494 LEU495 ASP496 LYS497 ARG498 THR499 ASP500 PRO501 THR502 TRP503 PRO504 THR505 THR506 TRP507 PHE508 VAL509 PRO510 ASN511 LEU512 THR513 GLY514 GLU515 GLY516 ALA517 PHE518 LYS519 ASP520 VAL521 TYR522 SER523 VAL524 MET525 ASN526 ASN527 TRP528 GLY529 ALA530 ASN531 HIS532 CYS533 SER534 ILE535 SER536 TYR537 GLY538 HIS539 ILE540 GLY541 ALA542 ASP543 LEU544 ILE545 THR546 LEU547 ALA548 SER549 ILE550 LEU551 ARG552 ILE553 PRO554 VAL555 ASN556 MET557 HIS558 ASN559 VAL560 PRO561 GLU562 GLU563 LYS564 ILE565 PHE566 ARG567 PRO568 ASP569 ALA570 TRP571 SER572 MET573 PHE574 GLY575 THR576 LYS577 ASP578 LEU579 GLU580 GLY581 ALA582 ASP583 TYR584 ARG585 ALA586 CYS587 LYS588 LYS589 LEU590
Unit 3 ALA2 LYS3 ASP4 PRO5 ARG6 TYR7 VAL8 GLY9 ASN10 LEU11 PRO12 LYS13 ILE14 GLY15 ILE16 ARG17 PRO18 THR19 ILE20 ASP21 GLY22 ARG23 ARG24 LYS25 GLY26 VAL27 ARG28 GLU29 SER30 LEU31 GLU32 GLU33 THR34 THR35 MET36 ASN37 MET38 ALA39 LYS40 ALA41 VAL42 ALA43 LYS44 LEU45 LEU46 GLU47 GLU48 ASN49 VAL50 PHE51 TYR52 TYR53 ASN54 GLY55 GLN56 PRO57 VAL58 GLU59 CYS60 VAL61 ILE62 ALA63 ASP64 THR65 CYS66 ILE67 GLY68 GLY69 VAL70 LYS71 GLU72 ALA73 ALA74 GLU75 ALA76 ALA77 GLU78 LYS79 PHE80 ALA81 ARG82 GLU83 GLY84 VAL85 GLY86 VAL87 SER88 ILE89 THR90 VAL91 THR92 PRO93 CYS94 TRP95 CYS96 TYR97 GLY98 THR99 GLU100 THR101 MET102 ASP103 MET104 ASP105 PRO106 HIS107 ILE108 PRO109 LYS110 ALA111 VAL112 TRP113 GLY114 PHE115 ASN116 GLY117 THR118 GLU119 ARG120 PRO121 GLY122 ALA123 VAL124 TYR125 LEU126 ALA127 ALA128 VAL129 LEU130 ALA131 GLY132 TYR133 ASN134 GLN135 LYS136 GLY137 LEU138 PRO139 ALA140 PHE141 GLY142 ILE143 TYR144 GLY145 LYS146 ASP147 VAL148 GLN149 ASP150 ALA151 GLY152 ASP153 THR154 ASN155 ILE156 PRO157 GLU158 ASP159 VAL160 LYS161 GLU162 LYS163 LEU164 ILE165 ARG166 PHE167 ALA168 LYS169 ALA170 GLY171 LEU172 ALA173 VAL174 ALA175 MET176 MET177 LYS178 GLY179 LYS180 SER181 TYR182 LEU183 SER184 ILE185 GLY186 SER187 VAL188 SER189 MET190 GLY191 ILE192 ALA193 GLY194 SER195 VAL196 VAL197 GLN198 GLU199 ASP200 PHE201 PHE202 GLN203 ASN204 TYR205 LEU206 GLY207 MET208 ARG209 ASN210 GLU211 TYR212 VAL213 ASP214 MET215 SER216 GLU217 PHE218 VAL219 ARG220 ARG221 ILE222 GLU223 LEU224 GLY225 ILE226 TYR227 ASP228 LYS229 GLU230 GLU231 TYR232 GLU233 ARG234 ALA235 LEU236 LYS237 TRP238 VAL239 LYS240 GLU241 ASN242 CYS243 LYS244 VAL245 GLY246 PRO247 ASP248 ASN249 ASN250 ARG251 ASP252 GLY253 PHE254 LYS255 ARG256 THR257 GLU258 GLU259 GLN260 LYS261 GLU262 LYS263 ASP264 TRP265 GLU266 ILE267 SER268 VAL269 LYS270 MET271 ALA272 LEU273 ILE274 ALA275 ARG276 ASP277 LEU278 MET279 VAL280 GLY281 ASN282 LYS283 LYS284 LEU285 GLU286 GLU287 MET288 GLY289 TYR290 GLY291 GLU292 GLU293 ALA294 LEU295 GLY296 ARG297 ASN298 ALA299 ILE300 VAL301 ALA302 GLY303 PHE304 GLN305 GLY306 GLN307 ARG308 GLN309 TRP310 THR311 ASP312 TYR313 PHE314 PRO315 ASN316 GLY317 ASP318 PHE319 MET320 GLU321 THR322 ILE323 LEU324 ASN325 SER326 SER327 PHE328 ASP329 TRP330 ASN331 GLY332 LYS333 ARG334 ALA335 PRO336 TYR337 ILE338 PHE339 ALA340 THR341 GLU342 ASN343 ASP344 ASN345 LEU346 ASN347 GLY348 ILE349 SER350 MET351 LEU352 PHE353 GLY354 TYR355 LEU356 LEU357 THR358 ASN359 THR360 ALA361 GLN362 ILE363 PHE364 ALA365 ASP366 VAL367 ARG368 THR369 TYR370 TRP371 SER372 PRO373 GLU374 ALA375 VAL376 LYS377 ARG378 VAL379 THR380 GLY381 TYR382 THR383 LEU384 GLU385 GLY386 ARG387 ALA388 ALA389 ASN390 GLY391 ILE392 ILE393 HIS394 LEU395 ILE396 ASN397 SER398 GLY399 ALA400 ALA401 ALA402 LEU403 ASP404 GLY405 THR406 GLY407 GLU408 GLN409 THR410 LYS411 ASP412 GLY413 LYS414 PRO415 VAL416 ILE417 LYS418 PRO419 TYR420 TYR421 GLU422 LEU423 THR424 ASP425 GLU426 ASP427 ILE428 LYS429 LYS430 CYS431 LEU432 GLU433 ALA434 THR435 GLN436 PHE437 ARG438 PRO439 ALA440 SER441 THR442 GLU443 TYR444 PHE445 ARG446 GLY447 GLY448 GLY449 TYR450 SER451 THR452 ASP453 PHE454 LEU455 THR456 LYS457 GLY458 GLY459 MET460 PRO461 VAL462 THR463 ILE464 SER465 ARG466 LEU467 ASN468 ILE469 VAL470 LYS471 GLY472 LEU473 GLY474 PRO475 VAL476 LEU477 GLN478 ILE479 ALA480 GLU481 GLY482 TYR483 THR484 VAL485 ASP486 LEU487 PRO488 GLU489 GLU490 VAL491 HIS492 ASP493 VAL494 LEU495 ASP496 LYS497 ARG498 THR499 ASP500 PRO501 THR502 TRP503 PRO504 THR505 THR506 TRP507 PHE508 VAL509 PRO510 ASN511 LEU512 THR513 GLY514 GLU515 GLY516 ALA517 PHE518 LYS519 ASP520 VAL521 TYR522 SER523 VAL524 MET525 ASN526 ASN527 TRP528 GLY529 ALA530 ASN531 HIS532 CYS533 SER534 ILE535 SER536 TYR537 GLY538 HIS539 ILE540 GLY541 ALA542 ASP543 LEU544 ILE545 THR546 LEU547 ALA548 SER549 ILE550 LEU551 ARG552 ILE553 PRO554 VAL555 ASN556 MET557 HIS558 ASN559 VAL560 PRO561 GLU562 GLU563 LYS564 ILE565 PHE566 ARG567 PRO568 ASP569 ALA570 TRP571 SER572 MET573 PHE574 GLY575 THR576 LYS577 ASP578 LEU579 GLU580 GLY581 ALA582 ASP583 TYR584 ARG585 ALA586 CYS587 LYS588 LYS589 LEU590

Ligands
Unit 4 FOC601 MN701 MN801
Unit 5 FOC601 MN701 MN801
Unit 6 FOC601 MN701 MN801

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany