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| Title | STRUCTURE OF AQUIFEX AEOLICUS GIDA IN THE FORM I CRYSTAL | |
| Keywords | 5-CARBOXYMETHYLAMINOMETHYLURIDINE, MODIFICATION, TRNA, WOBBL URIDINE, FAD, FAD-BINDING PROTEIN, TRNA MODIFICATION ENZYME | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 2ZXH | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICAT MNMG | A | 603 | 4804 | 0 |
| 2 | Protein | TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICAT MNMG | B | 601 | 4789 | 0 |
| 3 | Ligand | TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICAT MNMG | A | 1 | 0 | 53 |
| 4 | Ligand | TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICAT MNMG | B | 1 | 0 | 53 |
| 5 | Ligand | TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICAT MNMG | A | 2 | 0 | 10 |
| 6 | Ligand | TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICAT MNMG | B | 1 | 0 | 5 |
| total | 1209 | 9593 | 121 |
| Unit 1 | ASP6 GLU7 PHE8 ASP9 VAL10 VAL11 VAL12 ILE13 GLY14 GLY15 GLY16 HIS17 ALA18 GLY19 ILE20 GLU21 ALA22 ALA23 LEU24 ALA25 ALA26 ALA27 ARG28 MET29 GLY30 ALA31 LYS32 THR33 ALA34 MET35 PHE36 VAL37 LEU38 ASN39 ALA40 ASP41 THR42 ILE43 GLY44 GLN45 MET46 SER47 CYS48 ASN49 PRO50 ALA51 ILE52 GLY53 GLY54 ILE55 ALA56 LYS57 GLY58 ILE59 VAL60 VAL61 ARG62 GLU63 ILE64 ASP65 ALA66 LEU67 GLY68 GLY69 GLU70 MET71 GLY72 LYS73 ALA74 ILE75 ASP76 GLN77 THR78 GLY79 ILE80 GLN81 PHE82 LYS83 MET84 LEU85 ASN86 THR87 ARG88 LYS89 GLY90 LYS91 ALA92 VAL93 GLN94 SER95 PRO96 ARG97 ALA98 GLN99 ALA100 ASP101 LYS102 LYS103 ARG104 TYR105 ARG106 GLU107 TYR108 MET109 LYS110 LYS111 VAL112 CYS113 GLU114 ASN115 GLN116 GLU117 ASN118 LEU119 TYR120 ILE121 LYS122 GLN123 GLU124 GLU125 VAL126 VAL127 ASP128 ILE129 ILE130 VAL131 LYS132 ASN133 ASN134 GLN135 VAL136 VAL137 GLY138 VAL139 ARG140 THR141 ASN142 LEU143 GLY144 VAL145 GLU146 TYR147 LYS148 THR149 LYS150 ALA151 VAL152 VAL153 VAL154 THR155 THR156 GLY157 THR158 PHE159 LEU160 ASN161 GLY162 VAL163 ILE164 TYR165 ILE166 GLY167 ASP168 LYS169 MET170 ILE171 PRO172 GLY173 GLY174 ARG175 LEU176 GLY177 GLU178 PRO179 ARG180 SER181 GLU182 GLY183 LEU184 SER185 ASP186 PHE187 TYR188 ARG189 ARG190 PHE191 ASP192 PHE193 PRO194 LEU195 ILE196 ARG197 PHE198 LYS199 THR200 GLY201 THR202 PRO203 ALA204 ARG205 LEU206 ASP207 LYS208 ARG209 THR210 ILE211 ASP212 PHE213 SER214 ALA215 LEU216 GLU217 VAL218 ALA219 PRO220 GLY221 ASP222 ASP223 PRO224 PRO225 PRO226 LYS227 PHE228 SER229 PHE230 TRP231 THR232 GLU233 PRO234 VAL235 GLY236 SER237 TYR238 TRP239 PHE240 PRO241 LYS242 GLY243 LYS244 GLU245 GLN246 VAL247 ASN248 CYS249 TRP250 ILE251 THR252 TYR253 THR254 THR255 PRO256 LYS257 THR258 HIS259 GLU260 ILE261 ILE262 ARG263 LYS264 ASN265 LEU266 HIS267 ARG268 THR269 ALA270 LEU271 TYR272 GLY273 GLY274 LEU275 ILE276 LYS277 GLY278 ILE279 GLY280 PRO281 ARG282 TYR283 CYS284 PRO285 SER286 ILE287 GLU288 ASP289 LYS290 ILE291 VAL292 LYS293 PHE294 PRO295 ASP296 LYS297 GLU298 ARG299 HIS300 GLN301 ILE302 PHE303 LEU304 GLU305 PRO306 GLU307 GLY308 LEU309 ASP310 THR311 ILE312 GLU313 ILE314 TYR315 PRO316 ASN317 GLY318 LEU319 SER320 THR321 SER322 LEU323 PRO324 GLU325 GLU326 VAL327 GLN328 TRP329 GLU330 MET331 TYR332 ARG333 SER334 ILE335 PRO336 GLY337 LEU338 GLU339 ASN340 VAL341 VAL342 LEU343 ILE344 ARG345 PRO346 ALA347 TYR348 ALA349 ILE350 GLU351 TYR352 ASP353 VAL354 VAL355 PRO356 PRO357 THR358 GLU359 LEU360 TYR361 PRO362 THR363 LEU364 GLU365 THR366 LYS367 LYS368 ILE369 ARG370 GLY371 LEU372 PHE373 HIS374 ALA375 GLY376 ASN377 PHE378 ASN379 GLY380 THR381 THR382 GLY383 TYR384 GLU385 GLU386 ALA387 ALA388 GLY389 GLN390 GLY391 ILE392 VAL393 ALA394 GLY395 ILE396 ASN397 ALA398 ALA399 LEU400 ARG401 ALA402 PHE403 GLY404 LYS405 GLU406 PRO407 ILE408 TYR409 LEU410 ARG411 ARG412 ASP413 GLU414 SER415 TYR416 ILE417 GLY418 VAL419 MET420 ILE421 ASP422 ASP423 LEU424 THR425 THR426 LYS427 GLY428 VAL429 THR430 GLU431 PRO432 TYR433 ARG434 LEU435 PHE436 THR437 SER438 ARG439 SER440 GLU441 TYR442 ARG443 LEU444 TYR445 ILE446 ARG447 GLN448 ASP449 ASN450 ALA451 ILE452 LEU453 ARG454 LEU455 ALA456 LYS457 LEU458 GLY459 ARG460 GLU461 LEU462 GLY463 LEU464 LEU465 SER466 GLU467 GLU468 GLN469 TYR470 LYS471 LEU472 VAL473 LYS474 GLU475 LEU476 GLU477 ARG478 GLU479 ILE480 GLU481 LYS482 TRP483 LYS484 GLU485 PHE486 TYR487 LYS488 SER489 GLU490 ARG491 VAL492 ARG501 SER502 TYR503 SER504 VAL505 ALA506 THR507 LEU508 MET509 THR510 MET511 ASN512 TYR513 THR514 LEU515 ASP516 ASP517 VAL518 LYS519 GLU520 LYS521 PHE522 GLY523 TYR524 GLU525 VAL526 PRO527 GLN528 HIS529 PRO530 TYR531 VAL532 LYS533 GLU534 GLU535 VAL536 GLU537 ILE538 GLN539 LEU540 LYS541 TYR542 GLU543 PRO544 TYR545 ILE546 GLU547 ARG548 GLU549 ARG550 LYS551 LEU552 ASN553 GLU554 LYS555 LEU556 LYS557 LYS558 LEU559 GLU560 ASP561 THR562 LYS563 ILE564 PRO565 PRO566 ASP567 ILE568 ASP569 TYR570 ASP571 LYS572 ILE573 PRO574 GLY575 LEU576 THR577 LYS578 GLU579 ALA580 ARG581 GLU582 LYS583 LEU584 LYS585 LYS586 PHE587 LYS588 PRO589 ILE590 THR591 VAL592 GLY593 GLN594 ALA595 SER596 ARG597 ILE598 ASP599 GLY600 ILE601 THR602 PRO603 ALA604 ALA605 ILE606 THR607 ALA608 LEU609 LEU610 VAL611 TYR612 LEU613 GLY614 LYS615 LEU616 |
| Unit 2 | ASP6 GLU7 PHE8 ASP9 VAL10 VAL11 VAL12 ILE13 GLY14 GLY15 GLY16 HIS17 ALA18 GLY19 ILE20 GLU21 ALA22 ALA23 LEU24 ALA25 ALA26 ALA27 ARG28 MET29 GLY30 ALA31 LYS32 THR33 ALA34 MET35 PHE36 VAL37 LEU38 ASN39 ALA40 ASP41 THR42 ILE43 GLY44 GLN45 MET46 SER47 CYS48 ASN49 PRO50 ALA51 ILE52 GLY53 GLY54 ILE55 ALA56 LYS57 GLY58 ILE59 VAL60 VAL61 ARG62 GLU63 ILE64 ASP65 ALA66 LEU67 GLY68 GLY69 GLU70 MET71 GLY72 LYS73 ALA74 ILE75 ASP76 GLN77 THR78 GLY79 ILE80 GLN81 PHE82 LYS83 MET84 LEU85 ASN86 THR87 ARG88 LYS89 GLY90 LYS91 ALA92 VAL93 GLN94 SER95 PRO96 ARG97 ALA98 GLN99 ALA100 ASP101 LYS102 LYS103 ARG104 TYR105 ARG106 GLU107 TYR108 MET109 LYS110 LYS111 VAL112 CYS113 GLU114 ASN115 GLN116 GLU117 ASN118 LEU119 TYR120 ILE121 LYS122 GLN123 GLU124 GLU125 VAL126 VAL127 ASP128 ILE129 ILE130 VAL131 LYS132 ASN133 ASN134 GLN135 VAL136 VAL137 GLY138 VAL139 ARG140 THR141 ASN142 LEU143 GLY144 VAL145 GLU146 TYR147 LYS148 THR149 LYS150 ALA151 VAL152 VAL153 VAL154 THR155 THR156 GLY157 THR158 PHE159 LEU160 ASN161 GLY162 VAL163 ILE164 TYR165 ILE166 GLY167 ASP168 LYS169 MET170 ILE171 PRO172 GLY173 GLY174 ARG175 LEU176 GLY177 GLU178 PRO179 ARG180 SER181 GLU182 GLY183 LEU184 SER185 ASP186 PHE187 TYR188 ARG189 ARG190 PHE191 ASP192 PHE193 PRO194 LEU195 ILE196 ARG197 PHE198 LYS199 THR200 GLY201 THR202 PRO203 ALA204 ARG205 LEU206 ASP207 LYS208 ARG209 THR210 ILE211 ASP212 PHE213 SER214 ALA215 LEU216 GLU217 VAL218 ALA219 PRO220 GLY221 ASP222 ASP223 PRO224 PRO225 PRO226 LYS227 PHE228 SER229 PHE230 TRP231 THR232 GLU233 PRO234 VAL235 GLY236 SER237 TYR238 TRP239 PHE240 PRO241 LYS242 GLY243 LYS244 GLU245 GLN246 VAL247 ASN248 CYS249 TRP250 ILE251 THR252 TYR253 THR254 THR255 PRO256 LYS257 THR258 HIS259 GLU260 ILE261 ILE262 ARG263 LYS264 ASN265 LEU266 HIS267 ARG268 THR269 ALA270 LEU271 TYR272 GLY273 GLY274 LEU275 ILE276 LYS277 GLY278 ILE279 GLY280 PRO281 ARG282 TYR283 CYS284 PRO285 SER286 ILE287 GLU288 ASP289 LYS290 ILE291 VAL292 LYS293 PHE294 PRO295 ASP296 LYS297 GLU298 ARG299 HIS300 GLN301 ILE302 PHE303 LEU304 GLU305 PRO306 GLU307 GLY308 LEU309 ASP310 THR311 ILE312 GLU313 ILE314 TYR315 PRO316 ASN317 GLY318 LEU319 SER320 THR321 SER322 LEU323 PRO324 GLU325 GLU326 VAL327 GLN328 TRP329 GLU330 MET331 TYR332 ARG333 SER334 ILE335 PRO336 GLY337 LEU338 GLU339 ASN340 VAL341 VAL342 LEU343 ILE344 ARG345 PRO346 ALA347 TYR348 ALA349 ILE350 GLU351 TYR352 ASP353 VAL354 VAL355 PRO356 PRO357 THR358 GLU359 LEU360 TYR361 PRO362 THR363 LEU364 GLU365 THR366 LYS367 LYS368 ILE369 ARG370 GLY371 LEU372 PHE373 HIS374 ALA375 GLY376 ASN377 PHE378 ASN379 GLY380 THR381 THR382 GLY383 TYR384 GLU385 GLU386 ALA387 ALA388 GLY389 GLN390 GLY391 ILE392 VAL393 ALA394 GLY395 ILE396 ASN397 ALA398 ALA399 LEU400 ARG401 ALA402 PHE403 GLY404 LYS405 GLU406 PRO407 ILE408 TYR409 LEU410 ARG411 ARG412 ASP413 GLU414 SER415 TYR416 ILE417 GLY418 VAL419 MET420 ILE421 ASP422 ASP423 LEU424 THR425 THR426 LYS427 GLY428 VAL429 THR430 GLU431 PRO432 TYR433 ARG434 LEU435 PHE436 THR437 SER438 ARG439 SER440 GLU441 TYR442 ARG443 LEU444 TYR445 ILE446 ARG447 GLN448 ASP449 ASN450 ALA451 ILE452 LEU453 ARG454 LEU455 ALA456 LYS457 LEU458 GLY459 ARG460 GLU461 LEU462 GLY463 LEU464 LEU465 SER466 GLU467 GLU468 GLN469 TYR470 LYS471 LEU472 VAL473 LYS474 GLU475 LEU476 GLU477 ARG478 GLU479 ILE480 GLU481 LYS482 TRP483 LYS484 GLU485 PHE486 TYR487 LYS488 SER489 GLU490 ARG491 VAL492 ARG501 SER502 TYR503 SER504 VAL505 ALA506 THR507 LEU508 MET509 THR510 MET511 ASN512 TYR513 THR514 LEU515 ASP516 ASP517 VAL518 LYS519 GLU520 LYS521 PHE522 GLY523 TYR524 GLU525 VAL526 PRO527 GLN528 HIS529 PRO530 TYR531 VAL532 LYS533 GLU534 GLU535 VAL536 GLU537 ILE538 GLN539 LEU540 LYS541 TYR542 GLU543 PRO544 TYR545 ILE546 GLU547 ARG548 GLU549 ARG550 LYS551 LEU552 ASN553 GLU554 LYS555 LEU556 LYS557 LYS558 LEU559 GLU560 ASP561 THR562 LYS563 ILE564 PRO565 PRO566 ASP567 ILE568 ASP569 TYR570 ASP571 LYS572 ILE573 PRO574 GLY575 LEU576 THR577 LYS578 GLU579 ALA580 ARG581 GLU582 LYS583 LEU584 LYS585 LYS586 PHE587 LYS588 PRO589 ILE590 THR591 VAL592 GLY593 GLN594 ALA595 SER596 ARG597 ILE598 ASP599 GLY600 ILE601 THR602 PRO603 ALA604 ALA605 ILE606 THR607 ALA608 LEU609 LEU610 VAL611 TYR612 LEU613 GLY614 |
| Unit 3 | FAD618 |
| Unit 4 | FAD618 |
| Unit 5 | PO4619 PO4620 |
| Unit 6 | PO4619 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |