2ZM5 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF TRNA MODIFICATION ENZYME MIAA IN THE COMPLEX WITH TRNA(PHE)
• Keywords: PROTEIN-RNA COMPLEX, TRNA MODIFICATION ENZYME, NUCLEOTIDE- BINDING, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRNA PROCESSING, TRANSFERASE/RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2ZM5	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE	A	306	2347	56
2	Protein	TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE	B	305	2341	56
3	RNA		C	74	1577	0
4	RNA		D	69	1469	0
5	Ligand	TRNA(PHE)	C	6	0	6
6	Ligand	TRNA(PHE)	D	1	0	1
7	Water			162	0	162
total				923	7734	281

Proteins

Unit 1

LEU 9 PRO 10 LYS 11 ALA 12 ILE 13 PHE 14 LEU 15 MSE 16 GLY 17 PRO 18 THR 19 ALA 20 SER 21 GLY 22 LYS 23 THR 24 ALA 25 LEU 26 ALA 27 ILE 28 GLU 29 LEU 30 ARG 31 LYS 32 ILE 33 LEU 34 PRO 35 VAL 36 GLU 37 LEU 38 ILE 39 SER 40 VAL 41 ASP 42 SER 43 ALA 44 LEU 45 ILE 46 TYR 47 LYS 48 GLY 49 MSE 50 ASP 51 ILE 52 GLY 53 THR 54 ALA 55 LYS 56 PRO 57 ASN 58 ALA 59 GLU 60 GLU 61 LEU 62 LEU 63 ALA 64 ALA 65 PRO 66 HIS 67 ARG 68 LEU 69 LEU 70 ASP 71 ILE 72 ARG 73 ASP 74 PRO 75 SER 76 GLN 77 ALA 78 TYR 79 SER 80 ALA 81 ALA 82 ASP 83 PHE 84 ARG 85 ARG 86 ASP 87 ALA 88 LEU 89 ALA 90 GLU 91 MSE 92 ALA 93 ASP 94 ILE 95 THR 96 ALA 97 ALA 98 GLY 99 ARG 100 ILE 101 PRO 102 LEU 103 LEU 104 VAL 105 GLY 106 GLY 107 THR 108 MSE 109 LEU 110 TYR 111 PHE 112 LYS 113 ALA 114 LEU 115 LEU 116 GLU 117 GLY 118 LEU 119 SER 120 PRO 121 LEU 122 PRO 123 SER 124 ALA 125 ASP 126 PRO 127 GLU 128 VAL 129 ARG 130 ALA 131 ARG 132 ILE 133 GLU 134 GLN 135 GLN 136 ALA 137 ALA 138 GLU 139 GLN 140 GLY 141 TRP 142 GLU 143 SER 144 LEU 145 HIS 146 ARG 147 GLN 148 LEU 149 GLN 150 GLU 151 VAL 152 ASP 153 PRO 154 VAL 155 ALA 156 ALA 157 ALA 158 ARG 159 ILE 160 HIS 161 PRO 162 ASN 163 ASP 164 PRO 165 GLN 166 ARG 167 LEU 168 SER 169 ARG 170 ALA 171 LEU 172 GLU 173 VAL 174 PHE 175 PHE 176 ILE 177 SER 178 GLY 179 LYS 180 THR 181 LEU 182 THR 183 GLU 184 LEU 185 THR 186 GLN 187 THR 188 SER 189 GLY 190 ASP 191 ALA 192 LEU 193 PRO 194 TYR 195 GLN 196 VAL 197 HIS 198 GLN 199 PHE 200 ALA 201 ILE 202 ALA 203 PRO 204 ALA 205 SER 206 ARG 207 GLU 208 LEU 209 LEU 210 HIS 211 GLN 212 ARG 213 ILE 214 GLU 215 GLN 216 ARG 217 PHE 218 HIS 219 GLN 220 MSE 221 LEU 222 ALA 223 SER 224 GLY 225 PHE 226 GLU 227 ALA 228 GLU 229 VAL 230 ARG 231 ALA 232 LEU 233 PHE 234 ALA 235 ARG 236 GLY 237 ASP 238 LEU 239 HIS 240 THR 241 ASP 242 LEU 243 PRO 244 SER 245 ILE 246 ARG 247 CYS 248 VAL 249 GLY 250 TYR 251 ARG 252 GLN 253 MSE 254 TRP 255 SER 256 TYR 257 LEU 258 GLU 259 GLY 260 GLU 261 ILE 262 SER 263 TYR 264 ASP 265 GLU 266 MSE 267 VAL 268 TYR 269 ARG 270 GLY 271 VAL 272 CYS 273 ALA 274 THR 275 ARG 276 GLN 277 LEU 278 ALA 279 LYS 280 ARG 281 GLN 282 ILE 283 THR 284 TRP 285 LEU 286 ARG 287 GLY 288 TRP 289 GLU 290 GLY 291 VAL 292 HIS 293 TRP 294 LEU 295 ASP 296 SER 297 GLU 298 LYS 299 PRO 300 GLU 301 GLN 302 ALA 303 ARG 304 ASP 305 GLU 306 VAL 307 LEU 308 GLN 309 VAL 310 VAL 311 GLY 312 ALA 313 ILE 314

Unit 2

ALA 7 SER 8 LEU 9 PRO 10 LYS 11 ALA 12 ILE 13 PHE 14 LEU 15 MSE 16 GLY 17 PRO 18 THR 19 ALA 20 SER 21 GLY 22 LYS 23 THR 24 ALA 25 LEU 26 ALA 27 ILE 28 GLU 29 LEU 30 ARG 31 LYS 32 ILE 33 LEU 34 PRO 35 VAL 36 GLU 37 LEU 38 ILE 39 SER 40 VAL 41 ASP 42 SER 43 ALA 44 LEU 45 ILE 46 TYR 47 LYS 48 GLY 49 MSE 50 ASP 51 ILE 52 GLY 53 THR 54 ALA 55 LYS 56 PRO 57 ASN 58 ALA 59 GLU 60 GLU 61 LEU 62 LEU 63 ALA 64 ALA 65 PRO 66 HIS 67 ARG 68 LEU 69 LEU 70 ASP 71 ILE 72 ARG 73 ASP 74 PRO 75 SER 76 GLN 77 ALA 78 TYR 79 SER 80 ALA 81 ALA 82 ASP 83 PHE 84 ARG 85 ARG 86 ASP 87 ALA 88 LEU 89 ALA 90 GLU 91 MSE 92 ALA 93 ASP 94 ILE 95 THR 96 ALA 97 ALA 98 GLY 99 ARG 100 ILE 101 PRO 102 LEU 103 LEU 104 VAL 105 GLY 106 GLY 107 THR 108 MSE 109 LEU 110 TYR 111 PHE 112 LYS 113 ALA 114 LEU 115 LEU 116 GLU 117 GLY 118 LEU 119 SER 120 PRO 121 LEU 122 PRO 123 SER 124 ALA 125 ASP 126 PRO 127 GLU 128 VAL 129 ARG 130 ALA 131 ARG 132 ILE 133 GLU 134 GLN 135 GLN 136 ALA 137 ALA 138 GLU 139 GLN 140 GLY 141 TRP 142 GLU 143 SER 144 LEU 145 HIS 146 ARG 147 GLN 148 LEU 149 GLN 150 GLU 151 VAL 152 ASP 153 PRO 154 VAL 155 ALA 156 ALA 157 ALA 158 ARG 159 ILE 160 HIS 161 PRO 162 ASN 163 ASP 164 PRO 165 GLN 166 ARG 167 LEU 168 SER 169 ARG 170 ALA 171 LEU 172 GLU 173 VAL 174 PHE 175 PHE 176 ILE 177 SER 178 GLY 179 LYS 180 THR 181 LEU 182 THR 183 GLU 184 LEU 185 THR 186 GLN 187 THR 188 SER 189 GLY 190 ASP 191 ALA 192 LEU 193 PRO 194 TYR 195 GLN 196 VAL 197 HIS 198 GLN 199 PHE 200 ALA 201 ILE 202 ALA 203 PRO 204 ALA 205 SER 206 ARG 207 GLU 208 LEU 209 LEU 210 HIS 211 GLN 212 ARG 213 ILE 214 GLU 215 GLN 216 ARG 217 PHE 218 HIS 219 GLN 220 MSE 221 LEU 222 ALA 223 SER 224 GLY 225 PHE 226 GLU 227 ALA 228 GLU 229 VAL 230 ARG 231 ALA 232 LEU 233 PHE 234 ALA 235 ARG 236 GLY 237 ASP 238 LEU 239 HIS 240 THR 241 ASP 242 LEU 243 PRO 244 SER 245 ILE 246 ARG 247 CYS 248 VAL 249 GLY 250 TYR 251 ARG 252 GLN 253 MSE 254 TRP 255 SER 256 TYR 257 LEU 258 GLU 259 GLY 260 GLU 261 ILE 262 SER 263 TYR 264 ASP 265 GLU 266 MSE 267 VAL 268 TYR 269 ARG 270 GLY 271 VAL 272 CYS 273 ALA 274 THR 275 ARG 276 GLN 277 LEU 278 ALA 279 LYS 280 ARG 281 GLN 282 ILE 283 THR 284 TRP 285 LEU 286 ARG 287 GLY 288 TRP 289 GLU 290 GLY 291 VAL 292 HIS 293 TRP 294 LEU 295 ASP 296 SER 297 GLU 298 LYS 299 PRO 300 GLU 301 GLN 302 ALA 303 ARG 304 ASP 305 GLU 306 VAL 307 LEU 308 GLN 309 VAL 310 VAL 311

Nucleic acids

Unit 3	G 1 C 2 C 3 C 4 G 5 G 6 A 7 U 8 A 9 G 10 C 11 U 12 C 13 A 14 G 15 U 16 C 17 G 18 G 19 U 20 A 21 G 22 A 23 G 24 C 25 A 26 G 27 G 28 G 29 G 30 A 31 U 32 U 33 G 34 A 35 A 36 A 37 A 38 U 39 C 40 C 41 C 42 C 43 G 44 U 45 G 46 U 47 C 48 C 49 U 50 U 51 G 52 G 53 U 54 U 55 C 56 G 57 A 58 U 59 U 60 C 61 C 62 G 63 A 64 G 65 U 66 C 67 C 68 G 69 G 70 G 71 C 72 A 73 C 74
Unit 4	G 1 C 2 C 3 C 4 G 5 G 6 A 7 U 8 A 9 G 10 C 11 U 12 C 13 A 14 G 15 U 16 C 17 G 18 G 19 U 20 A 21 G 22 A 23 G 24 C 25 A 26 G 27 G 28 G 29 G 30 A 31 U 32 U 33 G 34 A 35 A 36 A 37 A 38 U 39 C 40 C 41 C 42 C 43 G 44 U 45 G 46 U 47 C 48 C 49 U 50 U 51 G 52 G 53 U 54 U 55 C 56 G 57 A 58 U 59 U 60 C 61 C 62 G 63 A 64 G 65 U 66 C 67 C 68 G 69

Ligands

Unit 5	MG 77 MG 78 MG 79 MG 80 MG 81 MG 82
Unit 6	MG 77