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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS FOR DSRNA RECOGNITION BY NS1 PROTEIN OF HUM INFLUENZA VIRUS A
Keywords DSRNA, PROTEIN-RNA INTERACTION, HOST-VIRUS INTERACTION, INTE ANTIVIRAL SYSTEM EVASION, NUCLEUS, RNA-BINDING, SUPPRESSOR SILENCING, RNA BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2ZKO     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NON-STRUCTURAL PROTEIN 1  A 70 562 0
2  Protein   NON-STRUCTURAL PROTEIN 1  B 70 562 0
3  RNA    C 21 442 0
4  RNA    D 21 442 0
5  Ligand   NON-STRUCTURAL PROTEIN 1  A 1 0 6
6  Ligand   NON-STRUCTURAL PROTEIN 1  B 1 0 6
7 Water     205 0 205
total       389 2008 217

Proteins
Unit 1 MET1 ASP2 PRO3 ASN4 THR5 VAL6 SER7 SER8 PHE9 GLN10 VAL11 ASP12 CYS13 PHE14 LEU15 TRP16 HIS17 VAL18 ARG19 LYS20 ARG21 VAL22 ALA23 ASP24 GLN25 GLU26 LEU27 GLY28 ASP29 ALA30 PRO31 PHE32 LEU33 ASP34 ARG35 LEU36 ARG37 ARG38 ASP39 GLN40 LYS41 SER42 LEU43 ARG44 GLY45 ARG46 GLY47 SER48 THR49 LEU50 GLY51 LEU52 ASP53 ILE54 GLU55 THR56 ALA57 THR58 ARG59 ALA60 GLY61 LYS62 GLN63 ILE64 VAL65 GLU66 ARG67 ILE68 LEU69 LYS70
Unit 2 MET1 ASP2 PRO3 ASN4 THR5 VAL6 SER7 SER8 PHE9 GLN10 VAL11 ASP12 CYS13 PHE14 LEU15 TRP16 HIS17 VAL18 ARG19 LYS20 ARG21 VAL22 ALA23 ASP24 GLN25 GLU26 LEU27 GLY28 ASP29 ALA30 PRO31 PHE32 LEU33 ASP34 ARG35 LEU36 ARG37 ARG38 ASP39 GLN40 LYS41 SER42 LEU43 ARG44 GLY45 ARG46 GLY47 SER48 THR49 LEU50 GLY51 LEU52 ASP53 ILE54 GLU55 THR56 ALA57 THR58 ARG59 ALA60 GLY61 LYS62 GLN63 ILE64 VAL65 GLU66 ARG67 ILE68 LEU69 LYS70

Nucleic acids
Unit 3 A1 G2 A3 C4 A5 G6 C7 A8 U9 U10 A11 U12 G13 C14 U15 G16 U17 C18 U19 U20 U21
Unit 4 A1 G2 A3 C4 A5 G6 C7 A8 U9 U10 A11 U12 G13 C14 U15 G16 U17 C18 U19 U20 U21

Ligands
Unit 5 GOL71
Unit 6 GOL71

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany