2Z95 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF GDP-D-MANNOSE DEHYDRATASE FROM AQUIFEX AEOLICUS VF5
• Keywords: SHORT-CHAIN DEHYDROGENASE/REDUCTASE, LYASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2Z95	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GDP-D-MANNOSE DEHYDRATASE	A	333	2662	0
2	Protein	GDP-D-MANNOSE DEHYDRATASE	B	332	2656	0
3	Protein	GDP-D-MANNOSE DEHYDRATASE	C	338	2675	0
4	Protein	GDP-D-MANNOSE DEHYDRATASE	D	332	2573	0
5	Ligand	GDP-D-MANNOSE DEHYDRATASE	A	1	0	48
6	Ligand	GDP-D-MANNOSE DEHYDRATASE	D	1	0	28
7	Water			271	0	271
total				1608	10566	347

Proteins

Unit 1	GLY 3 LYS 4 ARG 5 ALA 6 LEU 7 ILE 8 THR 9 GLY 10 ILE 11 ARG 12 GLY 13 GLN 14 ASP 15 GLY 16 ALA 17 TYR 18 LEU 19 ALA 20 LYS 21 LEU 22 LEU 23 LEU 24 GLU 25 LYS 26 GLY 27 TYR 28 GLU 29 VAL 30 TYR 31 GLY 32 ALA 33 ASP 34 ARG 35 ALA 41 SER 42 TRP 43 ARG 44 LEU 45 LYS 46 GLU 47 LEU 48 GLY 49 ILE 50 GLU 51 ASN 52 ASP 53 VAL 54 LYS 55 ILE 56 ILE 57 HIS 58 MET 59 ASP 60 LEU 61 LEU 62 GLU 63 PHE 64 SER 65 ASN 66 ILE 67 ILE 68 ARG 69 THR 70 ILE 71 GLU 72 LYS 73 VAL 74 GLN 75 PRO 76 ASP 77 GLU 78 VAL 79 TYR 80 ASN 81 LEU 82 ALA 83 ALA 84 GLN 85 SER 86 PHE 87 VAL 88 GLY 89 VAL 90 SER 91 PHE 92 GLU 93 GLN 94 PRO 95 ILE 96 LEU 97 THR 98 ALA 99 GLU 100 VAL 101 ASP 102 ALA 103 ILE 104 GLY 105 VAL 106 LEU 107 ARG 108 ILE 109 LEU 110 GLU 111 ALA 112 LEU 113 ARG 114 THR 115 VAL 116 LYS 117 PRO 118 ASP 119 THR 120 LYS 121 PHE 122 TYR 123 GLN 124 ALA 125 SER 126 THR 127 SER 128 GLU 129 MET 130 PHE 131 GLY 132 LYS 133 VAL 134 GLN 135 GLU 136 ILE 137 PRO 138 GLN 139 THR 140 GLU 141 LYS 142 THR 143 PRO 144 PHE 145 TYR 146 PRO 147 ARG 148 SER 149 PRO 150 TYR 151 ALA 152 VAL 153 ALA 154 LYS 155 LEU 156 PHE 157 GLY 158 HIS 159 TRP 160 ILE 161 THR 162 VAL 163 ASN 164 TYR 165 ARG 166 GLU 167 ALA 168 TYR 169 ASN 170 MET 171 PHE 172 ALA 173 CYS 174 SER 175 GLY 176 ILE 177 LEU 178 PHE 179 ASN 180 HIS 181 GLU 182 SER 183 PRO 184 LEU 185 ARG 186 GLY 187 ILE 188 GLU 189 PHE 190 VAL 191 THR 192 ARG 193 LYS 194 ILE 195 THR 196 TYR 197 SER 198 LEU 199 ALA 200 ARG 201 ILE 202 LYS 203 TYR 204 GLY 205 LEU 206 GLN 207 ASP 208 LYS 209 LEU 210 VAL 211 LEU 212 GLY 213 ASN 214 LEU 215 ASN 216 ALA 217 LYS 218 ARG 219 ASP 220 TRP 221 GLY 222 TYR 223 ALA 224 PRO 225 GLU 226 TYR 227 VAL 228 GLU 229 ALA 230 MET 231 TRP 232 LEU 233 MET 234 MET 235 GLN 236 GLN 237 PRO 238 GLU 239 PRO 240 ASP 241 ASP 242 TYR 243 VAL 244 ILE 245 ALA 246 THR 247 GLY 248 GLU 249 THR 250 HIS 251 THR 252 VAL 253 ARG 254 GLU 255 PHE 256 VAL 257 GLU 258 LYS 259 ALA 260 ALA 261 LYS 262 ILE 263 ALA 264 GLY 265 PHE 266 ASP 267 ILE 268 GLU 269 TRP 270 VAL 271 GLY 272 GLU 273 GLY 274 ILE 275 ASN 276 GLU 277 LYS 278 GLY 279 ILE 280 ASP 281 ARG 282 ASN 283 THR 284 GLY 285 LYS 286 VAL 287 ILE 288 VAL 289 GLU 290 VAL 291 SER 292 GLU 293 GLU 294 PHE 295 PHE 296 ARG 297 PRO 298 ALA 299 GLU 300 VAL 301 ASP 302 ILE 303 LEU 304 VAL 305 GLY 306 ASN 307 PRO 308 GLU 309 LYS 310 ALA 311 MET 312 LYS 313 LYS 314 LEU 315 GLY 316 TRP 317 LYS 318 PRO 319 ARG 320 THR 321 THR 322 PHE 323 ASP 324 GLU 325 LEU 326 VAL 327 GLU 328 ILE 329 MET 330 MET 331 GLU 332 ALA 333 ASP 334 LEU 335 LYS 336 ARG 337 VAL 338 ARG 339 ASP 340
Unit 2	GLY 3 LYS 4 ARG 5 ALA 6 LEU 7 ILE 8 THR 9 GLY 10 ILE 11 ARG 12 GLY 13 GLN 14 ASP 15 GLY 16 ALA 17 TYR 18 LEU 19 ALA 20 LYS 21 LEU 22 LEU 23 LEU 24 GLU 25 LYS 26 GLY 27 TYR 28 GLU 29 VAL 30 TYR 31 GLY 32 ALA 33 ASP 34 ALA 41 SER 42 TRP 43 ARG 44 LEU 45 LYS 46 GLU 47 LEU 48 GLY 49 ILE 50 GLU 51 ASN 52 ASP 53 VAL 54 LYS 55 ILE 56 ILE 57 HIS 58 MET 59 ASP 60 LEU 61 LEU 62 GLU 63 PHE 64 SER 65 ASN 66 ILE 67 ILE 68 ARG 69 THR 70 ILE 71 GLU 72 LYS 73 VAL 74 GLN 75 PRO 76 ASP 77 GLU 78 VAL 79 TYR 80 ASN 81 LEU 82 ALA 83 ALA 84 GLN 85 SER 86 PHE 87 VAL 88 GLY 89 VAL 90 SER 91 PHE 92 GLU 93 GLN 94 PRO 95 ILE 96 LEU 97 THR 98 ALA 99 GLU 100 VAL 101 ASP 102 ALA 103 ILE 104 GLY 105 VAL 106 LEU 107 ARG 108 ILE 109 LEU 110 GLU 111 ALA 112 LEU 113 ARG 114 THR 115 VAL 116 LYS 117 PRO 118 ASP 119 THR 120 LYS 121 PHE 122 TYR 123 GLN 124 ALA 125 SER 126 THR 127 SER 128 GLU 129 MET 130 PHE 131 GLY 132 LYS 133 VAL 134 GLN 135 GLU 136 ILE 137 PRO 138 GLN 139 THR 140 GLU 141 LYS 142 THR 143 PRO 144 PHE 145 TYR 146 PRO 147 ARG 148 SER 149 PRO 150 TYR 151 ALA 152 VAL 153 ALA 154 LYS 155 LEU 156 PHE 157 GLY 158 HIS 159 TRP 160 ILE 161 THR 162 VAL 163 ASN 164 TYR 165 ARG 166 GLU 167 ALA 168 TYR 169 ASN 170 MET 171 PHE 172 ALA 173 CYS 174 SER 175 GLY 176 ILE 177 LEU 178 PHE 179 ASN 180 HIS 181 GLU 182 SER 183 PRO 184 LEU 185 ARG 186 GLY 187 ILE 188 GLU 189 PHE 190 VAL 191 THR 192 ARG 193 LYS 194 ILE 195 THR 196 TYR 197 SER 198 LEU 199 ALA 200 ARG 201 ILE 202 LYS 203 TYR 204 GLY 205 LEU 206 GLN 207 ASP 208 LYS 209 LEU 210 VAL 211 LEU 212 GLY 213 ASN 214 LEU 215 ASN 216 ALA 217 LYS 218 ARG 219 ASP 220 TRP 221 GLY 222 TYR 223 ALA 224 PRO 225 GLU 226 TYR 227 VAL 228 GLU 229 ALA 230 MET 231 TRP 232 LEU 233 MET 234 MET 235 GLN 236 GLN 237 PRO 238 GLU 239 PRO 240 ASP 241 ASP 242 TYR 243 VAL 244 ILE 245 ALA 246 THR 247 GLY 248 GLU 249 THR 250 HIS 251 THR 252 VAL 253 ARG 254 GLU 255 PHE 256 VAL 257 GLU 258 LYS 259 ALA 260 ALA 261 LYS 262 ILE 263 ALA 264 GLY 265 PHE 266 ASP 267 ILE 268 GLU 269 TRP 270 VAL 271 GLY 272 GLU 273 GLY 274 ILE 275 ASN 276 GLU 277 LYS 278 GLY 279 ILE 280 ASP 281 ARG 282 ASN 283 THR 284 GLY 285 LYS 286 VAL 287 ILE 288 VAL 289 GLU 290 VAL 291 SER 292 GLU 293 GLU 294 PHE 295 PHE 296 ARG 297 PRO 298 ALA 299 GLU 300 VAL 301 ASP 302 ILE 303 LEU 304 VAL 305 GLY 306 ASN 307 PRO 308 GLU 309 LYS 310 ALA 311 MET 312 LYS 313 LYS 314 LEU 315 GLY 316 TRP 317 LYS 318 PRO 319 ARG 320 THR 321 THR 322 PHE 323 ASP 324 GLU 325 LEU 326 VAL 327 GLU 328 ILE 329 MET 330 MET 331 GLU 332 ALA 333 ASP 334 LEU 335 LYS 336 ARG 337 VAL 338 ARG 339 ASP 340
Unit 3	GLY 3 LYS 4 ARG 5 ALA 6 LEU 7 ILE 8 THR 9 GLY 10 ILE 11 ARG 12 GLY 13 GLN 14 ASP 15 GLY 16 ALA 17 TYR 18 LEU 19 ALA 20 LYS 21 LEU 22 LEU 23 LEU 24 GLU 25 LYS 26 GLY 27 TYR 28 GLU 29 VAL 30 TYR 31 GLY 32 ALA 33 ASP 34 ARG 35 ARG 36 SER 37 GLY 38 GLU 39 PHE 40 ALA 41 SER 42 TRP 43 ARG 44 LEU 45 LYS 46 GLU 47 LEU 48 GLY 49 ILE 50 GLU 51 ASN 52 ASP 53 VAL 54 LYS 55 ILE 56 ILE 57 HIS 58 MET 59 ASP 60 LEU 61 LEU 62 GLU 63 PHE 64 SER 65 ASN 66 ILE 67 ILE 68 ARG 69 THR 70 ILE 71 GLU 72 LYS 73 VAL 74 GLN 75 PRO 76 ASP 77 GLU 78 VAL 79 TYR 80 ASN 81 LEU 82 ALA 83 ALA 84 GLN 85 SER 86 PHE 87 VAL 88 GLY 89 VAL 90 SER 91 PHE 92 GLU 93 GLN 94 PRO 95 ILE 96 LEU 97 THR 98 ALA 99 GLU 100 VAL 101 ASP 102 ALA 103 ILE 104 GLY 105 VAL 106 LEU 107 ARG 108 ILE 109 LEU 110 GLU 111 ALA 112 LEU 113 ARG 114 THR 115 VAL 116 LYS 117 PRO 118 ASP 119 THR 120 LYS 121 PHE 122 TYR 123 GLN 124 ALA 125 SER 126 THR 127 SER 128 GLU 129 MET 130 PHE 131 GLY 132 LYS 133 VAL 134 GLN 135 GLU 136 ILE 137 PRO 138 GLN 139 THR 140 GLU 141 LYS 142 THR 143 PRO 144 PHE 145 TYR 146 PRO 147 ARG 148 SER 149 PRO 150 TYR 151 ALA 152 VAL 153 ALA 154 LYS 155 LEU 156 PHE 157 GLY 158 HIS 159 TRP 160 ILE 161 THR 162 VAL 163 ASN 164 TYR 165 ARG 166 GLU 167 ALA 168 TYR 169 ASN 170 MET 171 PHE 172 ALA 173 CYS 174 SER 175 GLY 176 ILE 177 LEU 178 PHE 179 ASN 180 HIS 181 GLU 182 SER 183 PRO 184 LEU 185 ARG 186 GLY 187 ILE 188 GLU 189 PHE 190 VAL 191 THR 192 ARG 193 LYS 194 ILE 195 THR 196 TYR 197 SER 198 LEU 199 ALA 200 ARG 201 ILE 202 LYS 203 TYR 204 GLY 205 LEU 206 GLN 207 ASP 208 LYS 209 LEU 210 VAL 211 LEU 212 GLY 213 ASN 214 LEU 215 ASN 216 ALA 217 LYS 218 ARG 219 ASP 220 TRP 221 GLY 222 TYR 223 ALA 224 PRO 225 GLU 226 TYR 227 VAL 228 GLU 229 ALA 230 MET 231 TRP 232 LEU 233 MET 234 MET 235 GLN 236 GLN 237 PRO 238 GLU 239 PRO 240 ASP 241 ASP 242 TYR 243 VAL 244 ILE 245 ALA 246 THR 247 GLY 248 GLU 249 THR 250 HIS 251 THR 252 VAL 253 ARG 254 GLU 255 PHE 256 VAL 257 GLU 258 LYS 259 ALA 260 ALA 261 LYS 262 ILE 263 ALA 264 GLY 265 PHE 266 ASP 267 ILE 268 GLU 269 TRP 270 VAL 271 GLY 272 GLU 273 GLY 274 ILE 275 ASN 276 GLU 277 LYS 278 GLY 279 ILE 280 ASP 281 ARG 282 ASN 283 THR 284 GLY 285 LYS 286 VAL 287 ILE 288 VAL 289 GLU 290 VAL 291 SER 292 GLU 293 GLU 294 PHE 295 PHE 296 ARG 297 PRO 298 ALA 299 GLU 300 VAL 301 ASP 302 ILE 303 LEU 304 VAL 305 GLY 306 ASN 307 PRO 308 GLU 309 LYS 310 ALA 311 MET 312 LYS 313 LYS 314 LEU 315 GLY 316 TRP 317 LYS 318 PRO 319 ARG 320 THR 321 THR 322 PHE 323 ASP 324 GLU 325 LEU 326 VAL 327 GLU 328 ILE 329 MET 330 MET 331 GLU 332 ALA 333 ASP 334 LEU 335 LYS 336 ARG 337 VAL 338 ARG 339 ASP 340
Unit 4	GLY 3 LYS 4 ARG 5 ALA 6 LEU 7 ILE 8 THR 9 GLY 10 ILE 11 ARG 12 GLY 13 GLN 14 ASP 15 GLY 16 ALA 17 TYR 18 LEU 19 ALA 20 LYS 21 LEU 22 LEU 23 LEU 24 GLU 25 LYS 26 GLY 27 TYR 28 GLU 29 VAL 30 TYR 31 GLY 32 ALA 33 ASP 34 GLY 38 GLU 39 PHE 40 ALA 41 SER 42 TRP 43 ARG 44 LEU 45 LYS 46 GLU 47 LEU 48 GLY 49 ILE 50 GLU 51 ASN 52 ASP 53 VAL 54 LYS 55 ILE 56 ILE 57 HIS 58 MET 59 ASP 60 LEU 61 LEU 62 GLU 63 PHE 64 SER 65 ASN 66 ILE 67 ILE 68 ARG 69 THR 70 ILE 71 GLU 72 LYS 73 VAL 74 GLN 75 PRO 76 ASP 77 GLU 78 VAL 79 TYR 80 ASN 81 LEU 82 ALA 83 ALA 84 GLN 85 SER 86 PHE 87 VAL 88 GLY 89 VAL 90 SER 91 PHE 92 GLU 93 GLN 94 PRO 95 ILE 96 LEU 97 THR 98 ALA 99 GLU 100 VAL 101 ASP 102 ALA 103 ILE 104 GLY 105 VAL 106 LEU 107 ARG 108 ILE 109 LEU 110 GLU 111 ALA 112 LEU 113 ARG 114 THR 115 VAL 116 LYS 117 PRO 118 ASP 119 THR 120 LYS 121 PHE 122 TYR 123 GLN 124 ALA 125 SER 126 THR 127 SER 128 GLU 129 MET 130 PHE 131 GLY 132 LYS 133 VAL 134 GLN 135 GLU 136 ILE 137 PRO 138 GLN 139 THR 140 GLU 141 LYS 142 THR 143 PRO 144 PHE 145 TYR 146 PRO 147 ARG 148 SER 149 PRO 150 TYR 151 ALA 152 VAL 153 ALA 154 LYS 155 LEU 156 PHE 157 GLY 158 HIS 159 TRP 160 ILE 161 THR 162 VAL 163 ASN 164 TYR 165 ARG 166 GLU 167 ALA 168 TYR 169 ASN 170 MET 171 PHE 172 ALA 173 CYS 174 SER 175 GLY 176 ILE 177 LEU 178 PHE 179 ASN 180 HIS 181 GLU 182 SER 183 PRO 184 LEU 185 ARG 186 GLY 187 ILE 188 GLU 189 PHE 190 VAL 191 THR 192 ARG 193 LYS 194 ILE 195 THR 196 TYR 197 SER 198 LEU 199 ALA 200 ARG 201 ILE 202 LYS 203 TYR 204 GLY 205 LEU 206 GLN 207 ASP 208 LYS 209 LEU 210 VAL 211 LEU 212 GLY 213 ASN 214 LEU 215 ASN 216 ALA 217 LYS 218 ARG 219 ASP 220 TRP 221 GLY 222 TYR 223 ALA 224 PRO 225 GLU 226 TYR 227 VAL 228 GLU 229 ALA 230 MET 231 TRP 232 LEU 233 MET 234 MET 235 GLN 236 GLN 237 PRO 238 GLU 239 PRO 240 ASP 241 ASP 242 TYR 243 VAL 244 ILE 245 ALA 246 THR 247 GLY 248 GLU 249 THR 250 HIS 251 THR 252 VAL 253 ARG 254 GLU 255 PHE 256 VAL 257 GLU 258 LYS 259 ALA 260 ALA 261 LYS 262 ILE 263 ALA 264 GLY 265 PHE 266 ASP 267 ILE 268 GLU 269 TRP 270 VAL 271 GLY 272 GLU 273 GLY 274 ILE 275 ASN 276 GLU 277 LYS 278 GLY 279 ILE 280 ASP 281 ARG 282 ASN 283 THR 284 GLY 285 LYS 286 VAL 287 ILE 288 VAL 289 GLU 290 VAL 291 SER 292 GLU 293 GLU 294 PHE 295 PHE 296 ARG 297 PRO 298 ALA 299 GLU 300 VAL 301 ASP 302 ILE 303 LEU 304 VAL 305 GLY 306 ASN 307 PRO 308 GLU 309 LYS 310 ALA 311 MET 312 LYS 313 LYS 314 LEU 315 GLY 316 TRP 317 LYS 318 PRO 319 ARG 320 THR 321 THR 322 PHE 323 ASP 324 GLU 325 LEU 326 VAL 327 GLU 328 ILE 329 MET 330 MET 331 GLU 332 ALA 333 ASP 334 LEU 335 LYS 336 ARG 337

Ligands

Unit 5	NDP 1001
Unit 6	GDP 1002