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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ARCHAEAL O-PHOSPHOSERYL-TRNA(SEC) SELEN TRANSFERASE (SEPSECS)
Keywords SELENOCYSTEINE BIOSYNTHESIS, SEVEN-STRANDED BETE-STRAND, PYR 5'-PHOSPHATE, PROTEIN BIOSYNTHESIS, PYRIDOXAL PHOSPHATE, SE TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2Z67     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE  A 434 3307 80
2  Protein   O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE  B 434 3307 80
3  Protein   O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE  C 434 3307 80
4  Protein   O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE  D 434 3307 80
5  Ligand   O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE  A 1 0 15
6  Ligand   O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE  B 2 0 20
7  Ligand   O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE  C 2 0 20
8  Ligand   O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE  D 1 0 15
9 Water     146 0 146
total       1888 13228 536
Proteins
Unit 1 MSE1 LEU2 ASP3 PHE4 ASN5 ILE6 GLU7 GLY8 LEU9 ILE10 PRO11 LYS12 ASN13 MSE14 GLU15 LYS16 ARG17 GLY18 GLU19 LEU20 VAL21 LEU22 ASN23 GLU24 TYR25 LEU26 LYS27 GLU28 ILE29 GLU30 ASP31 VAL32 PHE33 ASN34 HIS35 ARG36 LYS37 ILE38 PRO39 GLU40 ASN41 GLY42 ILE43 ASP44 ASP45 GLU46 LYS47 ILE48 LYS49 LEU50 PHE51 LEU52 LYS53 PHE54 LEU55 SER56 MSE57 MSE58 ASP59 THR60 ASP61 LYS62 ASP63 PRO64 LYS65 SER66 VAL67 ARG68 ILE69 GLY70 GLU71 ARG72 GLU73 ALA74 ARG75 THR76 TYR77 SER78 LYS79 ILE80 HIS81 GLU82 GLU83 LEU84 SER85 SER86 GLY87 PHE88 CYS89 HIS90 GLY91 ILE92 GLY93 ARG94 SER95 GLY96 ASN97 LEU98 VAL99 ASP100 PRO101 GLN102 PRO103 LYS104 ALA105 SER106 GLY107 ALA108 SER109 ILE110 MSE111 TYR112 ALA113 LEU114 THR115 ASN116 LYS117 ILE118 LEU119 GLU120 SER121 PHE122 PHE123 LYS124 GLN125 LEU126 GLY127 LEU128 ASN129 VAL130 HIS131 ALA132 ILE133 ALA134 THR135 PRO136 ILE137 SER138 THR139 GLY140 MSE141 SER142 ILE143 SER144 LEU145 CYS146 LEU147 SER148 ALA149 ALA150 ARG151 LYS152 LYS153 TYR154 GLY155 SER156 ASN157 VAL158 VAL159 ILE160 TYR161 PRO162 TYR163 ALA164 SER165 HIS166 LYS167 SER168 PRO169 ILE170 LYS171 ALA172 VAL173 SER174 PHE175 VAL176 GLY177 MSE178 ASN179 MSE180 ARG181 LEU182 VAL183 GLU184 THR185 VAL186 LEU187 ASP188 GLY189 ASP190 ARG191 VAL192 TYR193 VAL194 PRO195 VAL196 GLU197 ASP198 ILE199 GLU200 ASN201 ALA202 ILE203 LYS204 LYS205 GLU206 ILE207 GLU208 LEU209 GLY210 ASN211 ARG212 PRO213 CYS214 VAL215 LEU216 SER217 THR218 LEU219 THR220 PHE221 PHE222 PRO223 PRO224 ARG225 ASN226 SER227 ASP228 ASP229 ILE230 VAL231 GLU232 ILE233 ALA234 LYS235 ILE236 CYS237 GLU238 ASN239 TYR240 ASP241 ILE242 PRO243 HIS244 ILE245 ILE246 ASN247 GLY248 ALA249 TYR250 ALA251 ILE252 GLN253 ASN254 ASN255 TYR256 TYR257 LEU258 GLU259 LYS260 LEU261 LYS262 LYS263 ALA264 PHE265 LYS266 TYR267 ARG268 VAL269 ASP270 ALA271 VAL272 VAL273 SER274 SER275 SER276 ASP277 LYS278 ASN279 LEU280 LEU281 THR282 PRO283 ILE284 GLY285 GLY286 GLY287 LEU288 VAL289 TYR290 SER291 THR292 ASP293 ALA294 GLU295 PHE296 ILE297 LYS298 GLU299 ILE300 SER301 LEU302 SER303 TYR304 PRO305 GLY306 ARG307 ALA308 SER309 ALA310 THR311 PRO312 VAL313 VAL314 ASN315 THR316 LEU317 VAL318 SER319 LEU320 LEU321 SER322 MSE323 GLY324 SER325 LYS326 ASN327 TYR328 LEU329 GLU330 LEU331 VAL332 LYS333 ASN334 GLN335 LYS336 ASN337 SER338 LYS339 LYS340 LEU341 LEU342 ASP343 GLU344 LEU345 LEU346 ASN347 ASP348 LEU349 SER350 LYS351 LYS352 THR353 GLY354 GLY355 LYS356 PHE357 LEU358 ASP359 VAL360 GLU361 SER362 PRO363 ILE364 ALA365 SER366 CYS367 ILE368 SER369 VAL370 ASN371 SER372 ASP373 PRO374 VAL375 GLU376 ILE377 ALA378 ALA379 LYS380 LEU381 TYR382 ASN383 LEU384 ARG385 VAL386 THR387 GLY388 PRO389 ARG390 GLY391 ILE392 LYS393 LYS394 THR395 ASP396 HIS397 PHE398 GLY399 ASN400 CYS401 TYR402 LEU403 GLY404 THR405 TYR406 THR407 HIS408 ASP409 TYR410 ILE411 VAL412 MSE413 ASN414 ALA415 ALA416 ILE417 GLY418 VAL419 ARG420 THR421 GLU422 ASP423 ILE424 VAL425 ASN426 SER427 VAL428 SER429 LYS430 LEU431 GLU432 LYS433 ILE434
Unit 2 MSE1 LEU2 ASP3 PHE4 ASN5 ILE6 GLU7 GLY8 LEU9 ILE10 PRO11 LYS12 ASN13 MSE14 GLU15 LYS16 ARG17 GLY18 GLU19 LEU20 VAL21 LEU22 ASN23 GLU24 TYR25 LEU26 LYS27 GLU28 ILE29 GLU30 ASP31 VAL32 PHE33 ASN34 HIS35 ARG36 LYS37 ILE38 PRO39 GLU40 ASN41 GLY42 ILE43 ASP44 ASP45 GLU46 LYS47 ILE48 LYS49 LEU50 PHE51 LEU52 LYS53 PHE54 LEU55 SER56 MSE57 MSE58 ASP59 THR60 ASP61 LYS62 ASP63 PRO64 LYS65 SER66 VAL67 ARG68 ILE69 GLY70 GLU71 ARG72 GLU73 ALA74 ARG75 THR76 TYR77 SER78 LYS79 ILE80 HIS81 GLU82 GLU83 LEU84 SER85 SER86 GLY87 PHE88 CYS89 HIS90 GLY91 ILE92 GLY93 ARG94 SER95 GLY96 ASN97 LEU98 VAL99 ASP100 PRO101 GLN102 PRO103 LYS104 ALA105 SER106 GLY107 ALA108 SER109 ILE110 MSE111 TYR112 ALA113 LEU114 THR115 ASN116 LYS117 ILE118 LEU119 GLU120 SER121 PHE122 PHE123 LYS124 GLN125 LEU126 GLY127 LEU128 ASN129 VAL130 HIS131 ALA132 ILE133 ALA134 THR135 PRO136 ILE137 SER138 THR139 GLY140 MSE141 SER142 ILE143 SER144 LEU145 CYS146 LEU147 SER148 ALA149 ALA150 ARG151 LYS152 LYS153 TYR154 GLY155 SER156 ASN157 VAL158 VAL159 ILE160 TYR161 PRO162 TYR163 ALA164 SER165 HIS166 LYS167 SER168 PRO169 ILE170 LYS171 ALA172 VAL173 SER174 PHE175 VAL176 GLY177 MSE178 ASN179 MSE180 ARG181 LEU182 VAL183 GLU184 THR185 VAL186 LEU187 ASP188 GLY189 ASP190 ARG191 VAL192 TYR193 VAL194 PRO195 VAL196 GLU197 ASP198 ILE199 GLU200 ASN201 ALA202 ILE203 LYS204 LYS205 GLU206 ILE207 GLU208 LEU209 GLY210 ASN211 ARG212 PRO213 CYS214 VAL215 LEU216 SER217 THR218 LEU219 THR220 PHE221 PHE222 PRO223 PRO224 ARG225 ASN226 SER227 ASP228 ASP229 ILE230 VAL231 GLU232 ILE233 ALA234 LYS235 ILE236 CYS237 GLU238 ASN239 TYR240 ASP241 ILE242 PRO243 HIS244 ILE245 ILE246 ASN247 GLY248 ALA249 TYR250 ALA251 ILE252 GLN253 ASN254 ASN255 TYR256 TYR257 LEU258 GLU259 LYS260 LEU261 LYS262 LYS263 ALA264 PHE265 LYS266 TYR267 ARG268 VAL269 ASP270 ALA271 VAL272 VAL273 SER274 SER275 SER276 ASP277 LYS278 ASN279 LEU280 LEU281 THR282 PRO283 ILE284 GLY285 GLY286 GLY287 LEU288 VAL289 TYR290 SER291 THR292 ASP293 ALA294 GLU295 PHE296 ILE297 LYS298 GLU299 ILE300 SER301 LEU302 SER303 TYR304 PRO305 GLY306 ARG307 ALA308 SER309 ALA310 THR311 PRO312 VAL313 VAL314 ASN315 THR316 LEU317 VAL318 SER319 LEU320 LEU321 SER322 MSE323 GLY324 SER325 LYS326 ASN327 TYR328 LEU329 GLU330 LEU331 VAL332 LYS333 ASN334 GLN335 LYS336 ASN337 SER338 LYS339 LYS340 LEU341 LEU342 ASP343 GLU344 LEU345 LEU346 ASN347 ASP348 LEU349 SER350 LYS351 LYS352 THR353 GLY354 GLY355 LYS356 PHE357 LEU358 ASP359 VAL360 GLU361 SER362 PRO363 ILE364 ALA365 SER366 CYS367 ILE368 SER369 VAL370 ASN371 SER372 ASP373 PRO374 VAL375 GLU376 ILE377 ALA378 ALA379 LYS380 LEU381 TYR382 ASN383 LEU384 ARG385 VAL386 THR387 GLY388 PRO389 ARG390 GLY391 ILE392 LYS393 LYS394 THR395 ASP396 HIS397 PHE398 GLY399 ASN400 CYS401 TYR402 LEU403 GLY404 THR405 TYR406 THR407 HIS408 ASP409 TYR410 ILE411 VAL412 MSE413 ASN414 ALA415 ALA416 ILE417 GLY418 VAL419 ARG420 THR421 GLU422 ASP423 ILE424 VAL425 ASN426 SER427 VAL428 SER429 LYS430 LEU431 GLU432 LYS433 ILE434
Unit 3 MSE1 LEU2 ASP3 PHE4 ASN5 ILE6 GLU7 GLY8 LEU9 ILE10 PRO11 LYS12 ASN13 MSE14 GLU15 LYS16 ARG17 GLY18 GLU19 LEU20 VAL21 LEU22 ASN23 GLU24 TYR25 LEU26 LYS27 GLU28 ILE29 GLU30 ASP31 VAL32 PHE33 ASN34 HIS35 ARG36 LYS37 ILE38 PRO39 GLU40 ASN41 GLY42 ILE43 ASP44 ASP45 GLU46 LYS47 ILE48 LYS49 LEU50 PHE51 LEU52 LYS53 PHE54 LEU55 SER56 MSE57 MSE58 ASP59 THR60 ASP61 LYS62 ASP63 PRO64 LYS65 SER66 VAL67 ARG68 ILE69 GLY70 GLU71 ARG72 GLU73 ALA74 ARG75 THR76 TYR77 SER78 LYS79 ILE80 HIS81 GLU82 GLU83 LEU84 SER85 SER86 GLY87 PHE88 CYS89 HIS90 GLY91 ILE92 GLY93 ARG94 SER95 GLY96 ASN97 LEU98 VAL99 ASP100 PRO101 GLN102 PRO103 LYS104 ALA105 SER106 GLY107 ALA108 SER109 ILE110 MSE111 TYR112 ALA113 LEU114 THR115 ASN116 LYS117 ILE118 LEU119 GLU120 SER121 PHE122 PHE123 LYS124 GLN125 LEU126 GLY127 LEU128 ASN129 VAL130 HIS131 ALA132 ILE133 ALA134 THR135 PRO136 ILE137 SER138 THR139 GLY140 MSE141 SER142 ILE143 SER144 LEU145 CYS146 LEU147 SER148 ALA149 ALA150 ARG151 LYS152 LYS153 TYR154 GLY155 SER156 ASN157 VAL158 VAL159 ILE160 TYR161 PRO162 TYR163 ALA164 SER165 HIS166 LYS167 SER168 PRO169 ILE170 LYS171 ALA172 VAL173 SER174 PHE175 VAL176 GLY177 MSE178 ASN179 MSE180 ARG181 LEU182 VAL183 GLU184 THR185 VAL186 LEU187 ASP188 GLY189 ASP190 ARG191 VAL192 TYR193 VAL194 PRO195 VAL196 GLU197 ASP198 ILE199 GLU200 ASN201 ALA202 ILE203 LYS204 LYS205 GLU206 ILE207 GLU208 LEU209 GLY210 ASN211 ARG212 PRO213 CYS214 VAL215 LEU216 SER217 THR218 LEU219 THR220 PHE221 PHE222 PRO223 PRO224 ARG225 ASN226 SER227 ASP228 ASP229 ILE230 VAL231 GLU232 ILE233 ALA234 LYS235 ILE236 CYS237 GLU238 ASN239 TYR240 ASP241 ILE242 PRO243 HIS244 ILE245 ILE246 ASN247 GLY248 ALA249 TYR250 ALA251 ILE252 GLN253 ASN254 ASN255 TYR256 TYR257 LEU258 GLU259 LYS260 LEU261 LYS262 LYS263 ALA264 PHE265 LYS266 TYR267 ARG268 VAL269 ASP270 ALA271 VAL272 VAL273 SER274 SER275 SER276 ASP277 LYS278 ASN279 LEU280 LEU281 THR282 PRO283 ILE284 GLY285 GLY286 GLY287 LEU288 VAL289 TYR290 SER291 THR292 ASP293 ALA294 GLU295 PHE296 ILE297 LYS298 GLU299 ILE300 SER301 LEU302 SER303 TYR304 PRO305 GLY306 ARG307 ALA308 SER309 ALA310 THR311 PRO312 VAL313 VAL314 ASN315 THR316 LEU317 VAL318 SER319 LEU320 LEU321 SER322 MSE323 GLY324 SER325 LYS326 ASN327 TYR328 LEU329 GLU330 LEU331 VAL332 LYS333 ASN334 GLN335 LYS336 ASN337 SER338 LYS339 LYS340 LEU341 LEU342 ASP343 GLU344 LEU345 LEU346 ASN347 ASP348 LEU349 SER350 LYS351 LYS352 THR353 GLY354 GLY355 LYS356 PHE357 LEU358 ASP359 VAL360 GLU361 SER362 PRO363 ILE364 ALA365 SER366 CYS367 ILE368 SER369 VAL370 ASN371 SER372 ASP373 PRO374 VAL375 GLU376 ILE377 ALA378 ALA379 LYS380 LEU381 TYR382 ASN383 LEU384 ARG385 VAL386 THR387 GLY388 PRO389 ARG390 GLY391 ILE392 LYS393 LYS394 THR395 ASP396 HIS397 PHE398 GLY399 ASN400 CYS401 TYR402 LEU403 GLY404 THR405 TYR406 THR407 HIS408 ASP409 TYR410 ILE411 VAL412 MSE413 ASN414 ALA415 ALA416 ILE417 GLY418 VAL419 ARG420 THR421 GLU422 ASP423 ILE424 VAL425 ASN426 SER427 VAL428 SER429 LYS430 LEU431 GLU432 LYS433 ILE434
Unit 4 MSE1 LEU2 ASP3 PHE4 ASN5 ILE6 GLU7 GLY8 LEU9 ILE10 PRO11 LYS12 ASN13 MSE14 GLU15 LYS16 ARG17 GLY18 GLU19 LEU20 VAL21 LEU22 ASN23 GLU24 TYR25 LEU26 LYS27 GLU28 ILE29 GLU30 ASP31 VAL32 PHE33 ASN34 HIS35 ARG36 LYS37 ILE38 PRO39 GLU40 ASN41 GLY42 ILE43 ASP44 ASP45 GLU46 LYS47 ILE48 LYS49 LEU50 PHE51 LEU52 LYS53 PHE54 LEU55 SER56 MSE57 MSE58 ASP59 THR60 ASP61 LYS62 ASP63 PRO64 LYS65 SER66 VAL67 ARG68 ILE69 GLY70 GLU71 ARG72 GLU73 ALA74 ARG75 THR76 TYR77 SER78 LYS79 ILE80 HIS81 GLU82 GLU83 LEU84 SER85 SER86 GLY87 PHE88 CYS89 HIS90 GLY91 ILE92 GLY93 ARG94 SER95 GLY96 ASN97 LEU98 VAL99 ASP100 PRO101 GLN102 PRO103 LYS104 ALA105 SER106 GLY107 ALA108 SER109 ILE110 MSE111 TYR112 ALA113 LEU114 THR115 ASN116 LYS117 ILE118 LEU119 GLU120 SER121 PHE122 PHE123 LYS124 GLN125 LEU126 GLY127 LEU128 ASN129 VAL130 HIS131 ALA132 ILE133 ALA134 THR135 PRO136 ILE137 SER138 THR139 GLY140 MSE141 SER142 ILE143 SER144 LEU145 CYS146 LEU147 SER148 ALA149 ALA150 ARG151 LYS152 LYS153 TYR154 GLY155 SER156 ASN157 VAL158 VAL159 ILE160 TYR161 PRO162 TYR163 ALA164 SER165 HIS166 LYS167 SER168 PRO169 ILE170 LYS171 ALA172 VAL173 SER174 PHE175 VAL176 GLY177 MSE178 ASN179 MSE180 ARG181 LEU182 VAL183 GLU184 THR185 VAL186 LEU187 ASP188 GLY189 ASP190 ARG191 VAL192 TYR193 VAL194 PRO195 VAL196 GLU197 ASP198 ILE199 GLU200 ASN201 ALA202 ILE203 LYS204 LYS205 GLU206 ILE207 GLU208 LEU209 GLY210 ASN211 ARG212 PRO213 CYS214 VAL215 LEU216 SER217 THR218 LEU219 THR220 PHE221 PHE222 PRO223 PRO224 ARG225 ASN226 SER227 ASP228 ASP229 ILE230 VAL231 GLU232 ILE233 ALA234 LYS235 ILE236 CYS237 GLU238 ASN239 TYR240 ASP241 ILE242 PRO243 HIS244 ILE245 ILE246 ASN247 GLY248 ALA249 TYR250 ALA251 ILE252 GLN253 ASN254 ASN255 TYR256 TYR257 LEU258 GLU259 LYS260 LEU261 LYS262 LYS263 ALA264 PHE265 LYS266 TYR267 ARG268 VAL269 ASP270 ALA271 VAL272 VAL273 SER274 SER275 SER276 ASP277 LYS278 ASN279 LEU280 LEU281 THR282 PRO283 ILE284 GLY285 GLY286 GLY287 LEU288 VAL289 TYR290 SER291 THR292 ASP293 ALA294 GLU295 PHE296 ILE297 LYS298 GLU299 ILE300 SER301 LEU302 SER303 TYR304 PRO305 GLY306 ARG307 ALA308 SER309 ALA310 THR311 PRO312 VAL313 VAL314 ASN315 THR316 LEU317 VAL318 SER319 LEU320 LEU321 SER322 MSE323 GLY324 SER325 LYS326 ASN327 TYR328 LEU329 GLU330 LEU331 VAL332 LYS333 ASN334 GLN335 LYS336 ASN337 SER338 LYS339 LYS340 LEU341 LEU342 ASP343 GLU344 LEU345 LEU346 ASN347 ASP348 LEU349 SER350 LYS351 LYS352 THR353 GLY354 GLY355 LYS356 PHE357 LEU358 ASP359 VAL360 GLU361 SER362 PRO363 ILE364 ALA365 SER366 CYS367 ILE368 SER369 VAL370 ASN371 SER372 ASP373 PRO374 VAL375 GLU376 ILE377 ALA378 ALA379 LYS380 LEU381 TYR382 ASN383 LEU384 ARG385 VAL386 THR387 GLY388 PRO389 ARG390 GLY391 ILE392 LYS393 LYS394 THR395 ASP396 HIS397 PHE398 GLY399 ASN400 CYS401 TYR402 LEU403 GLY404 THR405 TYR406 THR407 HIS408 ASP409 TYR410 ILE411 VAL412 MSE413 ASN414 ALA415 ALA416 ILE417 GLY418 VAL419 ARG420 THR421 GLU422 ASP423 ILE424 VAL425 ASN426 SER427 VAL428 SER429 LYS430 LEU431 GLU432 LYS433 ILE434
Ligands
Unit 5 PLP1001
Unit 6 PLP1001 SO41002
Unit 7 PLP1001 SO41002
Unit 8 PLP1001
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany