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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE VT3 HYBRID OF HUMAN TLR4 AND HAGFIS
Keywords TLR4, TOLL-LIKE RECEPTOR, MD-2, LPS, LEUCINE-RICH REPEAT, GLYCOPROTEIN, IMMUNE RESPONSE, INFLAMMATORY RESPONSE, INNAT IMMUNITY, MEMBRANE, TRANSMEMBRANE, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2Z66     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 306 2405 0
2  Protein    B 306 2405 0
3  Protein    C 306 2405 0
4  Protein    D 306 2405 0
5  Ligand    E 3 0 39
6  Ligand    F 2 0 28
7  Ligand    G 4 0 49
8  Ligand    H 2 0 28
9  Ligand    I 3 0 39
10  Ligand    J 2 0 28
11  Ligand    K 4 0 49
12  Ligand    L 2 0 28
13  Ligand    M 3 0 39
14  Ligand    N 2 0 28
15  Ligand    O 4 0 49
16  Ligand    P 2 0 28
17  Ligand    Q 3 0 39
18  Ligand    R 2 0 28
19  Ligand    S 4 0 49
20  Ligand    T 2 0 28
21  Ligand    A 1 0 5
22  Ligand    B 1 0 5
23  Ligand    C 1 0 5
24  Ligand    D 1 0 5
25 Water     472 0 472
total       1744 9620 1068
Proteins
Unit 1 CYS24 PRO25 SER26 ARG27 CYS28 SER29 CYS30 SER31 GLY32 THR33 GLU34 ILE35 ARG36 CYS37 ASN38 SER39 LYS40 GLY41 LEU42 THR43 SER44 VAL45 PRO46 THR47 GLY48 ILE49 PRO50 SER51 SER52 ALA53 THR54 ARG55 LEU56 GLU57 LEU58 GLU59 SER60 ASN61 LYS62 LEU63 GLN64 SER65 LEU66 PRO67 HIS68 GLY69 VAL70 PHE71 ASP72 LYS73 LEU74 THR75 GLN76 LEU77 THR78 LYS79 LEU80 SER81 LEU82 SER83 SER84 ASN383 GLY384 LEU385 SER386 PHE387 LYS388 GLY389 CYS390 CYS391 SER392 GLN393 SER394 ASP395 PHE396 GLY397 THR398 THR399 SER400 LEU401 LYS402 TYR403 LEU404 ASP405 LEU406 SER407 PHE408 ASN409 GLY410 VAL411 ILE412 THR413 MET414 SER415 SER416 ASN417 PHE418 LEU419 GLY420 LEU421 GLU422 GLN423 LEU424 GLU425 HIS426 LEU427 ASP428 PHE429 GLN430 HIS431 SER432 ASN433 LEU434 LYS435 GLN436 MET437 SER438 GLU439 PHE440 SER441 VAL442 PHE443 LEU444 SER445 LEU446 ARG447 ASN448 LEU449 ILE450 TYR451 LEU452 ASP453 ILE454 SER455 HIS456 THR457 HIS458 THR459 ARG460 VAL461 ALA462 PHE463 ASN464 GLY465 ILE466 PHE467 ASN468 GLY469 LEU470 SER471 SER472 LEU473 GLU474 VAL475 LEU476 LYS477 MET478 ALA479 GLY480 ASN481 SER482 PHE483 GLN484 GLU485 ASN486 PHE487 LEU488 PRO489 ASP490 ILE491 PHE492 THR493 GLU494 LEU495 ARG496 ASN497 LEU498 THR499 PHE500 LEU501 ASP502 LEU503 SER504 GLN505 CYS506 GLN507 LEU508 GLU509 GLN510 LEU511 SER512 PRO513 THR514 ALA515 PHE516 ASN517 SER518 LEU519 SER520 SER521 LEU522 GLN523 VAL524 LEU525 ASN526 MET527 SER528 HIS529 ASN530 ASN531 PHE532 PHE533 SER534 LEU535 ASP536 THR537 PHE538 PRO539 TYR540 LYS541 CYS542 LEU543 ASN544 SER545 LEU546 GLN547 VAL548 LEU549 ASP550 TYR551 SER552 LEU553 ASN554 HIS555 ILE556 MET557 THR558 SER559 LYS560 LYS561 GLN562 GLU563 LEU564 GLN565 HIS566 PHE567 PRO568 SER569 SER570 LEU571 ALA572 PHE573 LEU574 ASN575 LEU576 THR577 GLN578 ASN579 ASP580 PHE581 ALA582 CYS583 THR584 CYS585 GLU586 HIS587 GLN588 SER589 PHE590 LEU591 GLN592 TRP593 ILE594 LYS595 ASP596 GLN597 ARG598 GLN599 LEU600 LEU601 VAL602 GLU603 VAL604 GLU605 ARG606 MET607 GLU608 CYS609 ALA610 THR611 PRO612 SER613 ASP614 LYS615 GLN616 GLY617 MET618 PRO619 VAL620 LEU621 SER622 LEU623 ASN624 ILE625 THR626 CYS627
Unit 2 CYS24 PRO25 SER26 ARG27 CYS28 SER29 CYS30 SER31 GLY32 THR33 GLU34 ILE35 ARG36 CYS37 ASN38 SER39 LYS40 GLY41 LEU42 THR43 SER44 VAL45 PRO46 THR47 GLY48 ILE49 PRO50 SER51 SER52 ALA53 THR54 ARG55 LEU56 GLU57 LEU58 GLU59 SER60 ASN61 LYS62 LEU63 GLN64 SER65 LEU66 PRO67 HIS68 GLY69 VAL70 PHE71 ASP72 LYS73 LEU74 THR75 GLN76 LEU77 THR78 LYS79 LEU80 SER81 LEU82 SER83 SER84 ASN383 GLY384 LEU385 SER386 PHE387 LYS388 GLY389 CYS390 CYS391 SER392 GLN393 SER394 ASP395 PHE396 GLY397 THR398 THR399 SER400 LEU401 LYS402 TYR403 LEU404 ASP405 LEU406 SER407 PHE408 ASN409 GLY410 VAL411 ILE412 THR413 MET414 SER415 SER416 ASN417 PHE418 LEU419 GLY420 LEU421 GLU422 GLN423 LEU424 GLU425 HIS426 LEU427 ASP428 PHE429 GLN430 HIS431 SER432 ASN433 LEU434 LYS435 GLN436 MET437 SER438 GLU439 PHE440 SER441 VAL442 PHE443 LEU444 SER445 LEU446 ARG447 ASN448 LEU449 ILE450 TYR451 LEU452 ASP453 ILE454 SER455 HIS456 THR457 HIS458 THR459 ARG460 VAL461 ALA462 PHE463 ASN464 GLY465 ILE466 PHE467 ASN468 GLY469 LEU470 SER471 SER472 LEU473 GLU474 VAL475 LEU476 LYS477 MET478 ALA479 GLY480 ASN481 SER482 PHE483 GLN484 GLU485 ASN486 PHE487 LEU488 PRO489 ASP490 ILE491 PHE492 THR493 GLU494 LEU495 ARG496 ASN497 LEU498 THR499 PHE500 LEU501 ASP502 LEU503 SER504 GLN505 CYS506 GLN507 LEU508 GLU509 GLN510 LEU511 SER512 PRO513 THR514 ALA515 PHE516 ASN517 SER518 LEU519 SER520 SER521 LEU522 GLN523 VAL524 LEU525 ASN526 MET527 SER528 HIS529 ASN530 ASN531 PHE532 PHE533 SER534 LEU535 ASP536 THR537 PHE538 PRO539 TYR540 LYS541 CYS542 LEU543 ASN544 SER545 LEU546 GLN547 VAL548 LEU549 ASP550 TYR551 SER552 LEU553 ASN554 HIS555 ILE556 MET557 THR558 SER559 LYS560 LYS561 GLN562 GLU563 LEU564 GLN565 HIS566 PHE567 PRO568 SER569 SER570 LEU571 ALA572 PHE573 LEU574 ASN575 LEU576 THR577 GLN578 ASN579 ASP580 PHE581 ALA582 CYS583 THR584 CYS585 GLU586 HIS587 GLN588 SER589 PHE590 LEU591 GLN592 TRP593 ILE594 LYS595 ASP596 GLN597 ARG598 GLN599 LEU600 LEU601 VAL602 GLU603 VAL604 GLU605 ARG606 MET607 GLU608 CYS609 ALA610 THR611 PRO612 SER613 ASP614 LYS615 GLN616 GLY617 MET618 PRO619 VAL620 LEU621 SER622 LEU623 ASN624 ILE625 THR626 CYS627
Unit 3 CYS24 PRO25 SER26 ARG27 CYS28 SER29 CYS30 SER31 GLY32 THR33 GLU34 ILE35 ARG36 CYS37 ASN38 SER39 LYS40 GLY41 LEU42 THR43 SER44 VAL45 PRO46 THR47 GLY48 ILE49 PRO50 SER51 SER52 ALA53 THR54 ARG55 LEU56 GLU57 LEU58 GLU59 SER60 ASN61 LYS62 LEU63 GLN64 SER65 LEU66 PRO67 HIS68 GLY69 VAL70 PHE71 ASP72 LYS73 LEU74 THR75 GLN76 LEU77 THR78 LYS79 LEU80 SER81 LEU82 SER83 SER84 ASN383 GLY384 LEU385 SER386 PHE387 LYS388 GLY389 CYS390 CYS391 SER392 GLN393 SER394 ASP395 PHE396 GLY397 THR398 THR399 SER400 LEU401 LYS402 TYR403 LEU404 ASP405 LEU406 SER407 PHE408 ASN409 GLY410 VAL411 ILE412 THR413 MET414 SER415 SER416 ASN417 PHE418 LEU419 GLY420 LEU421 GLU422 GLN423 LEU424 GLU425 HIS426 LEU427 ASP428 PHE429 GLN430 HIS431 SER432 ASN433 LEU434 LYS435 GLN436 MET437 SER438 GLU439 PHE440 SER441 VAL442 PHE443 LEU444 SER445 LEU446 ARG447 ASN448 LEU449 ILE450 TYR451 LEU452 ASP453 ILE454 SER455 HIS456 THR457 HIS458 THR459 ARG460 VAL461 ALA462 PHE463 ASN464 GLY465 ILE466 PHE467 ASN468 GLY469 LEU470 SER471 SER472 LEU473 GLU474 VAL475 LEU476 LYS477 MET478 ALA479 GLY480 ASN481 SER482 PHE483 GLN484 GLU485 ASN486 PHE487 LEU488 PRO489 ASP490 ILE491 PHE492 THR493 GLU494 LEU495 ARG496 ASN497 LEU498 THR499 PHE500 LEU501 ASP502 LEU503 SER504 GLN505 CYS506 GLN507 LEU508 GLU509 GLN510 LEU511 SER512 PRO513 THR514 ALA515 PHE516 ASN517 SER518 LEU519 SER520 SER521 LEU522 GLN523 VAL524 LEU525 ASN526 MET527 SER528 HIS529 ASN530 ASN531 PHE532 PHE533 SER534 LEU535 ASP536 THR537 PHE538 PRO539 TYR540 LYS541 CYS542 LEU543 ASN544 SER545 LEU546 GLN547 VAL548 LEU549 ASP550 TYR551 SER552 LEU553 ASN554 HIS555 ILE556 MET557 THR558 SER559 LYS560 LYS561 GLN562 GLU563 LEU564 GLN565 HIS566 PHE567 PRO568 SER569 SER570 LEU571 ALA572 PHE573 LEU574 ASN575 LEU576 THR577 GLN578 ASN579 ASP580 PHE581 ALA582 CYS583 THR584 CYS585 GLU586 HIS587 GLN588 SER589 PHE590 LEU591 GLN592 TRP593 ILE594 LYS595 ASP596 GLN597 ARG598 GLN599 LEU600 LEU601 VAL602 GLU603 VAL604 GLU605 ARG606 MET607 GLU608 CYS609 ALA610 THR611 PRO612 SER613 ASP614 LYS615 GLN616 GLY617 MET618 PRO619 VAL620 LEU621 SER622 LEU623 ASN624 ILE625 THR626 CYS627
Unit 4 CYS24 PRO25 SER26 ARG27 CYS28 SER29 CYS30 SER31 GLY32 THR33 GLU34 ILE35 ARG36 CYS37 ASN38 SER39 LYS40 GLY41 LEU42 THR43 SER44 VAL45 PRO46 THR47 GLY48 ILE49 PRO50 SER51 SER52 ALA53 THR54 ARG55 LEU56 GLU57 LEU58 GLU59 SER60 ASN61 LYS62 LEU63 GLN64 SER65 LEU66 PRO67 HIS68 GLY69 VAL70 PHE71 ASP72 LYS73 LEU74 THR75 GLN76 LEU77 THR78 LYS79 LEU80 SER81 LEU82 SER83 SER84 ASN383 GLY384 LEU385 SER386 PHE387 LYS388 GLY389 CYS390 CYS391 SER392 GLN393 SER394 ASP395 PHE396 GLY397 THR398 THR399 SER400 LEU401 LYS402 TYR403 LEU404 ASP405 LEU406 SER407 PHE408 ASN409 GLY410 VAL411 ILE412 THR413 MET414 SER415 SER416 ASN417 PHE418 LEU419 GLY420 LEU421 GLU422 GLN423 LEU424 GLU425 HIS426 LEU427 ASP428 PHE429 GLN430 HIS431 SER432 ASN433 LEU434 LYS435 GLN436 MET437 SER438 GLU439 PHE440 SER441 VAL442 PHE443 LEU444 SER445 LEU446 ARG447 ASN448 LEU449 ILE450 TYR451 LEU452 ASP453 ILE454 SER455 HIS456 THR457 HIS458 THR459 ARG460 VAL461 ALA462 PHE463 ASN464 GLY465 ILE466 PHE467 ASN468 GLY469 LEU470 SER471 SER472 LEU473 GLU474 VAL475 LEU476 LYS477 MET478 ALA479 GLY480 ASN481 SER482 PHE483 GLN484 GLU485 ASN486 PHE487 LEU488 PRO489 ASP490 ILE491 PHE492 THR493 GLU494 LEU495 ARG496 ASN497 LEU498 THR499 PHE500 LEU501 ASP502 LEU503 SER504 GLN505 CYS506 GLN507 LEU508 GLU509 GLN510 LEU511 SER512 PRO513 THR514 ALA515 PHE516 ASN517 SER518 LEU519 SER520 SER521 LEU522 GLN523 VAL524 LEU525 ASN526 MET527 SER528 HIS529 ASN530 ASN531 PHE532 PHE533 SER534 LEU535 ASP536 THR537 PHE538 PRO539 TYR540 LYS541 CYS542 LEU543 ASN544 SER545 LEU546 GLN547 VAL548 LEU549 ASP550 TYR551 SER552 LEU553 ASN554 HIS555 ILE556 MET557 THR558 SER559 LYS560 LYS561 GLN562 GLU563 LEU564 GLN565 HIS566 PHE567 PRO568 SER569 SER570 LEU571 ALA572 PHE573 LEU574 ASN575 LEU576 THR577 GLN578 ASN579 ASP580 PHE581 ALA582 CYS583 THR584 CYS585 GLU586 HIS587 GLN588 SER589 PHE590 LEU591 GLN592 TRP593 ILE594 LYS595 ASP596 GLN597 ARG598 GLN599 LEU600 LEU601 VAL602 GLU603 VAL604 GLU605 ARG606 MET607 GLU608 CYS609 ALA610 THR611 PRO612 SER613 ASP614 LYS615 GLN616 GLY617 MET618 PRO619 VAL620 LEU621 SER622 LEU623 ASN624 ILE625 THR626 CYS627
Ligands
Unit 5 NAG1 NAG2 BMA3
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2 BMA3 FUL4
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2 BMA3
Unit 10 NAG1 NAG2
Unit 11 NAG1 NAG2 BMA3 FUL4
Unit 12 NAG1 NAG2
Unit 13 NAG1 NAG2 BMA3
Unit 14 NAG1 NAG2
Unit 15 NAG1 NAG2 BMA3 FUL4
Unit 16 NAG1 NAG2
Unit 17 NAG1 NAG2 BMA3
Unit 18 NAG1 NAG2
Unit 19 NAG1 NAG2 BMA3 FUL4
Unit 20 NAG1 NAG2
Unit 21 SO42001
Unit 22 SO42002
Unit 23 SO42003
Unit 24 SO42004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany