2Z5U - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF LYSINE-SPECIFIC HISTONE DEMETHYLASE 1
• Keywords: CHROMATIN, HISTONE DEMETHYLASE, NUCLEOSOME, TRANSCRIPTION, L LYSINE-SPECIFIC, CHROMATIN REGULATOR, FAD, NUCLEUS, OXIDORE PHOSPHORYLATION, REPRESSOR, TRANSCRIPTION REGULATION, STRUC GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AN FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2Z5U	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1	A	642	5044	0
2	Ligand	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1	A	1	0	63
3	Water			130	0	130
total				773	5044	193

Proteins

Unit 1

SER 172 GLY 173 VAL 174 GLU 175 GLY 176 ALA 177 ALA 178 PHE 179 GLN 180 SER 181 ARG 182 LEU 183 PRO 184 HIS 185 ASP 186 ARG 187 MET 188 THR 189 SER 190 GLN 191 GLU 192 ALA 193 ALA 194 CYS 195 PHE 196 PRO 197 ASP 198 ILE 199 ILE 200 SER 201 GLY 202 PRO 203 GLN 204 GLN 205 THR 206 GLN 207 LYS 208 VAL 209 PHE 210 LEU 211 PHE 212 ILE 213 ARG 214 ASN 215 ARG 216 THR 217 LEU 218 GLN 219 LEU 220 TRP 221 LEU 222 ASP 223 ASN 224 PRO 225 LYS 226 ILE 227 GLN 228 LEU 229 THR 230 PHE 231 GLU 232 ALA 233 THR 234 LEU 235 GLN 236 GLN 237 LEU 238 GLU 239 ALA 240 PRO 241 TYR 242 ASN 243 SER 244 ASP 245 THR 246 VAL 247 LEU 248 VAL 249 HIS 250 ARG 251 VAL 252 HIS 253 SER 254 TYR 255 LEU 256 GLU 257 ARG 258 HIS 259 GLY 260 LEU 261 ILE 262 ASN 263 PHE 264 GLY 265 ILE 266 TYR 267 LYS 268 ARG 269 ILE 270 LYS 271 PRO 272 LEU 273 PRO 274 THR 275 LYS 276 LYS 277 THR 278 GLY 279 LYS 280 VAL 281 ILE 282 ILE 283 ILE 284 GLY 285 SER 286 GLY 287 VAL 288 SER 289 GLY 290 LEU 291 ALA 292 ALA 293 ALA 294 ARG 295 GLN 296 LEU 297 GLN 298 SER 299 PHE 300 GLY 301 MET 302 ASP 303 VAL 304 THR 305 LEU 306 LEU 307 GLU 308 ALA 309 ARG 310 ASP 311 ARG 312 VAL 313 GLY 314 GLY 315 ARG 316 VAL 317 ALA 318 THR 319 PHE 320 ARG 321 LYS 322 GLY 323 ASN 324 TYR 325 VAL 326 ALA 327 ASP 328 LEU 329 GLY 330 ALA 331 MET 332 VAL 333 VAL 334 THR 335 GLY 336 LEU 337 GLY 338 GLY 339 ASN 340 PRO 341 MET 342 ALA 343 VAL 344 VAL 345 SER 346 LYS 347 GLN 348 VAL 349 ASN 350 MET 351 GLU 352 LEU 353 ALA 354 LYS 355 ILE 356 LYS 357 GLN 358 LYS 359 CYS 360 PRO 361 LEU 362 TYR 363 GLU 364 ALA 365 ASN 366 GLY 367 GLN 368 ALA 369 VAL 370 PRO 371 LYS 372 GLU 373 LYS 374 ASP 375 GLU 376 MET 377 VAL 378 GLU 379 GLN 380 GLU 381 PHE 382 ASN 383 ARG 384 LEU 385 LEU 386 GLU 387 ALA 388 THR 389 SER 390 TYR 391 LEU 392 SER 393 HIS 394 GLN 395 LEU 396 ASP 397 PHE 398 ASN 399 VAL 400 LEU 401 ASN 402 ASN 403 LYS 404 PRO 405 VAL 406 SER 407 LEU 408 GLY 409 GLN 410 ALA 411 LEU 412 GLU 413 VAL 414 VAL 415 ILE 416 GLN 417 LEU 418 GLN 419 GLU 420 LYS 421 HIS 422 VAL 423 LYS 424 ASP 425 GLU 426 GLN 427 ILE 428 GLU 429 HIS 430 TRP 431 LYS 432 LYS 433 ILE 434 VAL 435 LYS 436 THR 437 GLN 438 GLU 439 GLU 440 LEU 441 LYS 442 GLU 443 LEU 444 LEU 445 ASN 446 LYS 447 MET 448 VAL 449 ASN 450 LEU 451 LYS 452 GLU 453 LYS 454 ILE 455 LYS 456 GLU 457 LEU 458 HIS 459 GLN 460 GLN 461 TYR 462 LYS 463 GLU 464 ILE 474 THR 475 ALA 476 GLU 477 PHE 478 LEU 479 VAL 480 LYS 481 SER 482 LYS 483 HIS 484 ARG 485 ASP 486 LEU 487 THR 488 ALA 489 LEU 490 CYS 491 LYS 492 GLU 493 TYR 494 ASP 495 GLU 496 LEU 497 ALA 498 GLU 499 THR 500 GLN 501 GLY 502 LYS 503 LEU 504 GLU 505 GLU 506 LYS 507 LEU 508 GLN 509 GLU 510 LEU 511 GLU 512 ALA 513 ASN 514 PRO 515 PRO 516 SER 517 ASP 518 VAL 519 TYR 520 LEU 521 SER 522 SER 523 ARG 524 ASP 525 ARG 526 GLN 527 ILE 528 LEU 529 ASP 530 TRP 531 HIS 532 PHE 533 ALA 534 ASN 535 LEU 536 GLU 537 PHE 538 ALA 539 ASN 540 ALA 541 THR 542 PRO 543 LEU 544 SER 545 THR 546 LEU 547 SER 548 LEU 549 LYS 550 HIS 551 TRP 552 ASP 553 GLN 554 ASP 555 ASP 556 ASP 557 PHE 558 GLU 559 PHE 560 THR 561 GLY 562 SER 563 HIS 564 LEU 565 THR 566 VAL 567 ARG 568 ASN 569 GLY 570 TYR 571 SER 572 CYS 573 VAL 574 PRO 575 VAL 576 ALA 577 LEU 578 ALA 579 GLU 580 GLY 581 LEU 582 ASP 583 ILE 584 LYS 585 LEU 586 ASN 587 THR 588 ALA 589 VAL 590 ARG 591 GLN 592 VAL 593 ARG 594 TYR 595 THR 596 ALA 597 SER 598 GLY 599 CYS 600 GLU 601 VAL 602 ILE 603 ALA 604 VAL 605 ASN 606 THR 607 ARG 608 SER 609 THR 610 SER 611 GLN 612 THR 613 PHE 614 ILE 615 TYR 616 LYS 617 CYS 618 ASP 619 ALA 620 VAL 621 LEU 622 CYS 623 THR 624 LEU 625 PRO 626 LEU 627 GLY 628 VAL 629 LEU 630 LYS 631 GLN 632 GLN 633 PRO 634 PRO 635 ALA 636 VAL 637 GLN 638 PHE 639 VAL 640 PRO 641 PRO 642 LEU 643 PRO 644 GLU 645 TRP 646 LYS 647 THR 648 SER 649 ALA 650 VAL 651 GLN 652 ARG 653 MET 654 GLY 655 PHE 656 GLY 657 ASN 658 LEU 659 ASN 660 LYS 661 VAL 662 VAL 663 LEU 664 CYS 665 PHE 666 ASP 667 ARG 668 VAL 669 PHE 670 TRP 671 ASP 672 PRO 673 SER 674 VAL 675 ASN 676 LEU 677 PHE 678 GLY 679 HIS 680 VAL 681 GLY 682 SER 683 THR 684 THR 685 ALA 686 SER 687 ARG 688 GLY 689 GLU 690 LEU 691 PHE 692 LEU 693 PHE 694 TRP 695 ASN 696 LEU 697 TYR 698 LYS 699 ALA 700 PRO 701 ILE 702 LEU 703 LEU 704 ALA 705 LEU 706 VAL 707 ALA 708 GLY 709 GLU 710 ALA 711 ALA 712 GLY 713 ILE 714 MET 715 GLU 716 ASN 717 ILE 718 SER 719 ASP 720 ASP 721 VAL 722 ILE 723 VAL 724 GLY 725 ARG 726 CYS 727 LEU 728 ALA 729 ILE 730 LEU 731 LYS 732 GLY 733 ILE 734 PHE 735 GLY 736 SER 737 SER 738 ALA 739 VAL 740 PRO 741 GLN 742 PRO 743 LYS 744 GLU 745 THR 746 VAL 747 VAL 748 SER 749 ARG 750 TRP 751 ARG 752 ALA 753 ASP 754 PRO 755 TRP 756 ALA 757 ARG 758 GLY 759 SER 760 TYR 761 SER 762 TYR 763 VAL 764 ALA 765 ALA 766 GLY 767 SER 768 SER 769 GLY 770 ASN 771 ASP 772 TYR 773 ASP 774 LEU 775 MET 776 ALA 777 GLN 778 PRO 779 ILE 780 THR 781 PRO 782 PRO 792 ILE 793 PRO 794 ARG 795 LEU 796 PHE 797 PHE 798 ALA 799 GLY 800 GLU 801 HIS 802 THR 803 ILE 804 ARG 805 ASN 806 TYR 807 PRO 808 ALA 809 THR 810 VAL 811 HIS 812 GLY 813 ALA 814 LEU 815 LEU 816 SER 817 GLY 818 LEU 819 ARG 820 GLU 821 ALA 822 GLY 823 ARG 824 ILE 825 ALA 826 ASP 827 GLN 828 PHE 829 LEU 830 GLY 831

Ligands

Unit 2

FAJ 1