2YY8 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF ARCHAEAL TRNA-METHYLASE FOR POSITION 56 (ATRM56) FROM PYROCOCCUS HORIKOSHII, COMPLEXED WITH S- ADENOSYL-L-METHIONINE
• Keywords: DEEP TREFOIL KNOT, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2YY8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	UPF0106 PROTEIN PH0461	A	174	1385	0
2	Protein	UPF0106 PROTEIN PH0461	B	174	1387	0
3	Ligand	UPF0106 PROTEIN PH0461	A	1	0	20
4	Ligand	UPF0106 PROTEIN PH0461	B	1	0	27
5	Water			101	0	101
total				451	2772	148

Proteins

Unit 1

MET 1 ILE 2 VAL 3 VAL 4 LEU 5 ARG 6 LEU 7 GLY 8 HIS 9 ARG 10 PRO 11 GLU 12 ASP 14 LYS 15 ARG 16 VAL 17 THR 18 THR 19 HIS 20 VAL 21 ALA 22 LEU 23 THR 24 ALA 25 ARG 26 ALA 27 PHE 28 GLY 29 ALA 30 ASP 31 GLY 32 ILE 33 ILE 34 ILE 35 ALA 36 SER 37 GLU 38 GLU 39 ASP 40 GLU 41 LYS 42 VAL 43 LYS 44 GLU 45 SER 46 VAL 47 GLU 48 ASP 49 VAL 50 VAL 51 LYS 52 ARG 53 TRP 54 GLY 55 GLY 56 PRO 57 PHE 58 PHE 59 ILE 60 GLU 61 PHE 62 ASN 63 ARG 64 ASN 65 TRP 66 ARG 67 LYS 68 VAL 69 MET 70 LYS 71 GLU 72 PHE 73 THR 74 GLY 75 VAL 76 LYS 77 VAL 78 HIS 79 LEU 80 THR 81 MET 82 TYR 83 GLY 84 LEU 85 HIS 86 VAL 87 ASP 88 ASP 89 VAL 90 ILE 91 GLU 92 GLU 93 LEU 94 LYS 95 GLU 96 LYS 97 LEU 98 LYS 99 LYS 100 GLY 101 GLU 102 ASP 103 PHE 104 MET 105 ILE 106 ILE 107 VAL 108 GLY 109 ALA 110 GLU 111 LYS 112 VAL 113 PRO 114 ARG 115 GLU 116 VAL 117 TYR 118 GLU 119 LEU 120 ALA 121 ASP 122 TYR 123 ASN 124 VAL 125 ALA 126 ILE 127 GLY 128 ASN 129 GLN 130 PRO 131 HIS 132 SER 133 GLU 134 VAL 135 ALA 136 ALA 137 LEU 138 ALA 139 VAL 140 LEU 141 LEU 142 ASP 143 ARG 144 LEU 145 LEU 146 GLU 147 GLY 148 LYS 149 GLY 150 LEU 151 LYS 152 LYS 153 GLU 154 PHE 155 LYS 156 GLY 157 ALA 158 LYS 159 ILE 160 LYS 161 ILE 162 VAL 163 PRO 164 GLN 165 ALA 166 ARG 167 GLY 168 LYS 169 LYS 170 VAL 171 VAL 172 GLU 173 VAL 174 GLN 175

Unit 2

MET 1 ILE 2 VAL 3 VAL 4 LEU 5 ARG 6 LEU 7 GLY 8 HIS 9 ARG 10 PRO 11 GLU 12 ARG 13 ASP 14 LYS 15 ARG 16 VAL 17 THR 18 THR 19 HIS 20 VAL 21 ALA 22 LEU 23 THR 24 ALA 25 ARG 26 ALA 27 PHE 28 GLY 29 ALA 30 ASP 31 GLY 32 ILE 33 ILE 34 ILE 35 ALA 36 SER 37 GLU 38 GLU 39 ASP 40 GLU 41 LYS 42 VAL 43 LYS 44 GLU 45 SER 46 VAL 47 GLU 48 ASP 49 VAL 50 VAL 51 LYS 52 ARG 53 TRP 54 GLY 55 GLY 56 PRO 57 PHE 58 PHE 59 ILE 60 GLU 61 PHE 62 ASN 63 ARG 64 ASN 65 TRP 66 ARG 67 LYS 68 VAL 69 MET 70 LYS 71 GLU 72 PHE 73 THR 74 GLY 75 VAL 76 LYS 77 VAL 78 HIS 79 LEU 80 THR 81 MET 82 TYR 83 GLY 84 LEU 85 HIS 86 VAL 87 ASP 88 ASP 89 VAL 90 ILE 91 GLU 92 GLU 93 LEU 94 LYS 95 GLU 96 LYS 97 LEU 98 LYS 99 LYS 100 GLY 101 GLU 102 ASP 103 PHE 104 MET 105 ILE 106 ILE 107 VAL 108 GLY 109 ALA 110 GLU 111 LYS 112 VAL 113 PRO 114 ARG 115 GLU 116 VAL 117 TYR 118 GLU 119 LEU 120 ALA 121 ASP 122 TYR 123 ASN 124 VAL 125 ALA 126 ILE 127 GLY 128 ASN 129 GLN 130 PRO 131 HIS 132 SER 133 GLU 134 VAL 135 ALA 136 ALA 137 LEU 138 ALA 139 VAL 140 LEU 141 LEU 142 ASP 143 ARG 144 LEU 145 LEU 146 GLU 147 GLY 148 LYS 149 GLY 150 LEU 151 LYS 152 LYS 153 GLU 154 PHE 155 LYS 156 GLY 157 ALA 158 LYS 159 ILE 160 LYS 161 ILE 162 VAL 163 PRO 164 GLN 165 ALA 166 ARG 167 GLY 168 LYS 169 LYS 170 VAL 171 VAL 172 GLU 173 VAL 174

Ligands

Unit 3	MTA 400
Unit 4	SAM 500