2YY5 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE FROM MYCOP PNEUMONIAE
• Keywords: AMINOACCYL TRNA SYNTHETASE, STRUCTURAL GENOMICS, NPPSFA, NAT PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKE STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2YY5	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRYPTOPHANYL-TRNA SYNTHETASE	A	334	2650	0
2	Protein	TRYPTOPHANYL-TRNA SYNTHETASE	B	346	2741	0
3	Protein	TRYPTOPHANYL-TRNA SYNTHETASE	C	336	2663	0
4	Protein	TRYPTOPHANYL-TRNA SYNTHETASE	D	346	2741	0
5	Ligand	TRYPTOPHANYL-TRNA SYNTHETASE	A	3	0	47
6	Ligand	TRYPTOPHANYL-TRNA SYNTHETASE	B	3	0	47
7	Ligand	TRYPTOPHANYL-TRNA SYNTHETASE	C	3	0	47
8	Ligand	TRYPTOPHANYL-TRNA SYNTHETASE	D	3	0	47
9	Water			491	0	491
total				1865	10795	679

Proteins

Unit 1	MET 2 LYS 3 ARG 4 ALA 5 LEU 6 THR 7 GLY 8 ILE 9 GLN 10 ALA 11 SER 12 GLY 13 LYS 14 GLN 15 HIS 16 LEU 17 GLY 18 ASN 19 TYR 20 LEU 21 GLY 22 VAL 23 MET 24 GLN 25 SER 26 LEU 27 ILE 28 GLU 29 LEU 30 GLN 31 GLU 32 GLN 33 CYS 34 GLN 35 LEU 36 PHE 37 VAL 38 PHE 39 VAL 40 ALA 41 ASP 42 LEU 43 HIS 44 SER 45 ILE 46 THR 47 VAL 48 ASP 49 PHE 50 GLN 51 PRO 52 GLN 53 ALA 54 LEU 55 LYS 56 GLN 57 ASN 58 ASN 59 PHE 60 ASP 61 LEU 62 VAL 63 ARG 64 THR 65 LEU 66 LEU 67 ALA 68 VAL 69 GLY 70 LEU 71 ASP 72 PRO 73 GLN 74 LYS 75 ALA 76 CYS 77 LEU 78 PHE 79 LEU 80 GLN 81 SER 82 ASP 83 LEU 84 LEU 85 GLU 86 HIS 87 SER 88 MET 89 MET 90 GLY 91 TYR 92 LEU 93 MET 94 MET 95 VAL 96 GLN 97 SER 98 ASN 99 LEU 100 GLY 101 GLU 102 LEU 103 GLN 104 ARG 105 MET 106 THR 107 GLN 108 PHE 109 LYS 110 ALA 111 LYS 112 LYS 113 ASN 125 ILE 126 PRO 127 THR 128 GLY 129 LEU 130 LEU 131 THR 132 TYR 133 PRO 134 ALA 135 LEU 136 MET 137 ALA 138 GLY 139 ASP 140 ILE 141 LEU 142 LEU 143 TYR 144 GLN 145 PRO 146 ASP 147 ILE 148 VAL 149 PRO 150 VAL 151 GLY 152 ASN 153 ASP 154 GLN 155 LYS 156 GLN 157 HIS 158 LEU 159 GLU 160 LEU 161 THR 162 ARG 163 ASP 164 LEU 165 ALA 166 GLN 167 ARG 168 ILE 169 GLN 170 LYS 171 LYS 172 PHE 173 LYS 174 LEU 175 LYS 176 LEU 177 ARG 178 LEU 179 PRO 180 GLN 181 PHE 182 VAL 183 GLN 184 ASN 185 LYS 186 ASP 187 THR 188 ASN 189 ARG 190 ILE 191 MET 192 ASP 193 LEU 194 PHE 195 ASP 196 PRO 197 THR 198 LYS 199 LYS 200 MET 201 SER 202 LYS 203 SER 204 SER 205 LYS 206 ASN 207 GLN 208 ASN 209 GLY 210 VAL 211 ILE 212 TYR 213 LEU 214 ASP 215 ASP 216 PRO 217 LYS 218 GLU 219 VAL 220 VAL 221 VAL 222 LYS 223 LYS 224 ILE 225 ARG 226 GLN 227 ALA 228 THR 229 THR 230 ASP 231 SER 232 PHE 233 ASN 234 LYS 235 ILE 236 ARG 237 PHE 238 ALA 239 SER 240 LYS 241 THR 242 GLN 243 PRO 244 GLY 245 VAL 246 THR 247 ASN 248 MET 249 LEU 250 THR 251 ILE 252 LEU 253 LYS 254 ALA 255 LEU 256 LEU 257 LYS 258 GLU 259 PRO 260 VAL 261 ASN 262 GLN 263 SER 264 LEU 265 THR 266 ASN 267 GLN 268 LEU 269 GLY 270 ASN 271 ASP 272 LEU 273 GLU 274 ALA 275 TYR 276 PHE 277 SER 278 THR 279 LYS 280 SER 281 TYR 282 LEU 283 ASP 284 LEU 285 LYS 286 ASN 287 ALA 288 LEU 289 THR 290 GLU 291 ALA 292 THR 293 VAL 294 ASN 295 LEU 296 LEU 297 VAL 298 ASN 299 ILE 300 GLN 301 ARG 302 LYS 303 ARG 304 GLU 305 GLN 306 ILE 307 SER 308 ARG 309 GLU 310 GLN 311 VAL 312 PHE 313 ASN 314 CYS 315 LEU 316 GLN 317 ALA 318 GLY 319 LYS 320 ASN 321 GLN 322 ALA 323 GLN 324 ALA 325 THR 326 ALA 327 ARG 328 THR 329 THR 330 LEU 331 ALA 332 LEU 333 PHE 334 TYR 335 ASP 336 GLY 337 PHE 338 GLY 339 LEU 340 GLY 341 SER 342 GLN 343 ASN 344 ILE 345 LYS 346
Unit 2	MET 1 MET 2 LYS 3 ARG 4 ALA 5 LEU 6 THR 7 GLY 8 ILE 9 GLN 10 ALA 11 SER 12 GLY 13 LYS 14 GLN 15 HIS 16 LEU 17 GLY 18 ASN 19 TYR 20 LEU 21 GLY 22 VAL 23 MET 24 GLN 25 SER 26 LEU 27 ILE 28 GLU 29 LEU 30 GLN 31 GLU 32 GLN 33 CYS 34 GLN 35 LEU 36 PHE 37 VAL 38 PHE 39 VAL 40 ALA 41 ASP 42 LEU 43 HIS 44 SER 45 ILE 46 THR 47 VAL 48 ASP 49 PHE 50 GLN 51 PRO 52 GLN 53 ALA 54 LEU 55 LYS 56 GLN 57 ASN 58 ASN 59 PHE 60 ASP 61 LEU 62 VAL 63 ARG 64 THR 65 LEU 66 LEU 67 ALA 68 VAL 69 GLY 70 LEU 71 ASP 72 PRO 73 GLN 74 LYS 75 ALA 76 CYS 77 LEU 78 PHE 79 LEU 80 GLN 81 SER 82 ASP 83 LEU 84 LEU 85 GLU 86 HIS 87 SER 88 MET 89 MET 90 GLY 91 TYR 92 LEU 93 MET 94 MET 95 VAL 96 GLN 97 SER 98 ASN 99 LEU 100 GLY 101 GLU 102 LEU 103 GLN 104 ARG 105 MET 106 THR 107 GLN 108 PHE 109 LYS 110 ALA 111 LYS 112 LYS 113 ALA 114 GLU 115 GLN 116 THR 117 ARG 118 ASN 119 PRO 120 ASN 121 GLY 122 THR 123 LEU 124 ASN 125 ILE 126 PRO 127 THR 128 GLY 129 LEU 130 LEU 131 THR 132 TYR 133 PRO 134 ALA 135 LEU 136 MET 137 ALA 138 GLY 139 ASP 140 ILE 141 LEU 142 LEU 143 TYR 144 GLN 145 PRO 146 ASP 147 ILE 148 VAL 149 PRO 150 VAL 151 GLY 152 ASN 153 ASP 154 GLN 155 LYS 156 GLN 157 HIS 158 LEU 159 GLU 160 LEU 161 THR 162 ARG 163 ASP 164 LEU 165 ALA 166 GLN 167 ARG 168 ILE 169 GLN 170 LYS 171 LYS 172 PHE 173 LYS 174 LEU 175 LYS 176 LEU 177 ARG 178 LEU 179 PRO 180 GLN 181 PHE 182 VAL 183 GLN 184 ASN 185 LYS 186 ASP 187 THR 188 ASN 189 ARG 190 ILE 191 MET 192 ASP 193 LEU 194 PHE 195 ASP 196 PRO 197 THR 198 LYS 199 LYS 200 MET 201 SER 202 LYS 203 SER 204 SER 205 LYS 206 ASN 207 GLN 208 ASN 209 GLY 210 VAL 211 ILE 212 TYR 213 LEU 214 ASP 215 ASP 216 PRO 217 LYS 218 GLU 219 VAL 220 VAL 221 VAL 222 LYS 223 LYS 224 ILE 225 ARG 226 GLN 227 ALA 228 THR 229 THR 230 ASP 231 SER 232 PHE 233 ASN 234 LYS 235 ILE 236 ARG 237 PHE 238 ALA 239 SER 240 LYS 241 THR 242 GLN 243 PRO 244 GLY 245 VAL 246 THR 247 ASN 248 MET 249 LEU 250 THR 251 ILE 252 LEU 253 LYS 254 ALA 255 LEU 256 LEU 257 LYS 258 GLU 259 PRO 260 VAL 261 ASN 262 GLN 263 SER 264 LEU 265 THR 266 ASN 267 GLN 268 LEU 269 GLY 270 ASN 271 ASP 272 LEU 273 GLU 274 ALA 275 TYR 276 PHE 277 SER 278 THR 279 LYS 280 SER 281 TYR 282 LEU 283 ASP 284 LEU 285 LYS 286 ASN 287 ALA 288 LEU 289 THR 290 GLU 291 ALA 292 THR 293 VAL 294 ASN 295 LEU 296 LEU 297 VAL 298 ASN 299 ILE 300 GLN 301 ARG 302 LYS 303 ARG 304 GLU 305 GLN 306 ILE 307 SER 308 ARG 309 GLU 310 GLN 311 VAL 312 PHE 313 ASN 314 CYS 315 LEU 316 GLN 317 ALA 318 GLY 319 LYS 320 ASN 321 GLN 322 ALA 323 GLN 324 ALA 325 THR 326 ALA 327 ARG 328 THR 329 THR 330 LEU 331 ALA 332 LEU 333 PHE 334 TYR 335 ASP 336 GLY 337 PHE 338 GLY 339 LEU 340 GLY 341 SER 342 GLN 343 ASN 344 ILE 345 LYS 346
Unit 3	MET 2 LYS 3 ARG 4 ALA 5 LEU 6 THR 7 GLY 8 ILE 9 GLN 10 ALA 11 SER 12 GLY 13 LYS 14 GLN 15 HIS 16 LEU 17 GLY 18 ASN 19 TYR 20 LEU 21 GLY 22 VAL 23 MET 24 GLN 25 SER 26 LEU 27 ILE 28 GLU 29 LEU 30 GLN 31 GLU 32 GLN 33 CYS 34 GLN 35 LEU 36 PHE 37 VAL 38 PHE 39 VAL 40 ALA 41 ASP 42 LEU 43 HIS 44 SER 45 ILE 46 THR 47 VAL 48 ASP 49 PHE 50 GLN 51 PRO 52 GLN 53 ALA 54 LEU 55 LYS 56 GLN 57 ASN 58 ASN 59 PHE 60 ASP 61 LEU 62 VAL 63 ARG 64 THR 65 LEU 66 LEU 67 ALA 68 VAL 69 GLY 70 LEU 71 ASP 72 PRO 73 GLN 74 LYS 75 ALA 76 CYS 77 LEU 78 PHE 79 LEU 80 GLN 81 SER 82 ASP 83 LEU 84 LEU 85 GLU 86 HIS 87 SER 88 MET 89 MET 90 GLY 91 TYR 92 LEU 93 MET 94 MET 95 VAL 96 GLN 97 SER 98 ASN 99 LEU 100 GLY 101 GLU 102 LEU 103 GLN 104 ARG 105 MET 106 THR 107 GLN 108 PHE 109 LYS 110 ALA 111 LYS 112 LYS 113 ALA 114 LEU 124 ASN 125 ILE 126 PRO 127 THR 128 GLY 129 LEU 130 LEU 131 THR 132 TYR 133 PRO 134 ALA 135 LEU 136 MET 137 ALA 138 GLY 139 ASP 140 ILE 141 LEU 142 LEU 143 TYR 144 GLN 145 PRO 146 ASP 147 ILE 148 VAL 149 PRO 150 VAL 151 GLY 152 ASN 153 ASP 154 GLN 155 LYS 156 GLN 157 HIS 158 LEU 159 GLU 160 LEU 161 THR 162 ARG 163 ASP 164 LEU 165 ALA 166 GLN 167 ARG 168 ILE 169 GLN 170 LYS 171 LYS 172 PHE 173 LYS 174 LEU 175 LYS 176 LEU 177 ARG 178 LEU 179 PRO 180 GLN 181 PHE 182 VAL 183 GLN 184 ASN 185 LYS 186 ASP 187 THR 188 ASN 189 ARG 190 ILE 191 MET 192 ASP 193 LEU 194 PHE 195 ASP 196 PRO 197 THR 198 LYS 199 LYS 200 MET 201 SER 202 LYS 203 SER 204 SER 205 LYS 206 ASN 207 GLN 208 ASN 209 GLY 210 VAL 211 ILE 212 TYR 213 LEU 214 ASP 215 ASP 216 PRO 217 LYS 218 GLU 219 VAL 220 VAL 221 VAL 222 LYS 223 LYS 224 ILE 225 ARG 226 GLN 227 ALA 228 THR 229 THR 230 ASP 231 SER 232 PHE 233 ASN 234 LYS 235 ILE 236 ARG 237 PHE 238 ALA 239 SER 240 LYS 241 THR 242 GLN 243 PRO 244 GLY 245 VAL 246 THR 247 ASN 248 MET 249 LEU 250 THR 251 ILE 252 LEU 253 LYS 254 ALA 255 LEU 256 LEU 257 LYS 258 GLU 259 PRO 260 VAL 261 ASN 262 GLN 263 SER 264 LEU 265 THR 266 ASN 267 GLN 268 LEU 269 GLY 270 ASN 271 ASP 272 LEU 273 GLU 274 ALA 275 TYR 276 PHE 277 SER 278 THR 279 LYS 280 SER 281 TYR 282 LEU 283 ASP 284 LEU 285 LYS 286 ASN 287 ALA 288 LEU 289 THR 290 GLU 291 ALA 292 THR 293 VAL 294 ASN 295 LEU 296 LEU 297 VAL 298 ASN 299 ILE 300 GLN 301 ARG 302 LYS 303 ARG 304 GLU 305 GLN 306 ILE 307 SER 308 ARG 309 GLU 310 GLN 311 VAL 312 PHE 313 ASN 314 CYS 315 LEU 316 GLN 317 ALA 318 GLY 319 LYS 320 ASN 321 GLN 322 ALA 323 GLN 324 ALA 325 THR 326 ALA 327 ARG 328 THR 329 THR 330 LEU 331 ALA 332 LEU 333 PHE 334 TYR 335 ASP 336 GLY 337 PHE 338 GLY 339 LEU 340 GLY 341 SER 342 GLN 343 ASN 344 ILE 345 LYS 346
Unit 4	MET 1 MET 2 LYS 3 ARG 4 ALA 5 LEU 6 THR 7 GLY 8 ILE 9 GLN 10 ALA 11 SER 12 GLY 13 LYS 14 GLN 15 HIS 16 LEU 17 GLY 18 ASN 19 TYR 20 LEU 21 GLY 22 VAL 23 MET 24 GLN 25 SER 26 LEU 27 ILE 28 GLU 29 LEU 30 GLN 31 GLU 32 GLN 33 CYS 34 GLN 35 LEU 36 PHE 37 VAL 38 PHE 39 VAL 40 ALA 41 ASP 42 LEU 43 HIS 44 SER 45 ILE 46 THR 47 VAL 48 ASP 49 PHE 50 GLN 51 PRO 52 GLN 53 ALA 54 LEU 55 LYS 56 GLN 57 ASN 58 ASN 59 PHE 60 ASP 61 LEU 62 VAL 63 ARG 64 THR 65 LEU 66 LEU 67 ALA 68 VAL 69 GLY 70 LEU 71 ASP 72 PRO 73 GLN 74 LYS 75 ALA 76 CYS 77 LEU 78 PHE 79 LEU 80 GLN 81 SER 82 ASP 83 LEU 84 LEU 85 GLU 86 HIS 87 SER 88 MET 89 MET 90 GLY 91 TYR 92 LEU 93 MET 94 MET 95 VAL 96 GLN 97 SER 98 ASN 99 LEU 100 GLY 101 GLU 102 LEU 103 GLN 104 ARG 105 MET 106 THR 107 GLN 108 PHE 109 LYS 110 ALA 111 LYS 112 LYS 113 ALA 114 GLU 115 GLN 116 THR 117 ARG 118 ASN 119 PRO 120 ASN 121 GLY 122 THR 123 LEU 124 ASN 125 ILE 126 PRO 127 THR 128 GLY 129 LEU 130 LEU 131 THR 132 TYR 133 PRO 134 ALA 135 LEU 136 MET 137 ALA 138 GLY 139 ASP 140 ILE 141 LEU 142 LEU 143 TYR 144 GLN 145 PRO 146 ASP 147 ILE 148 VAL 149 PRO 150 VAL 151 GLY 152 ASN 153 ASP 154 GLN 155 LYS 156 GLN 157 HIS 158 LEU 159 GLU 160 LEU 161 THR 162 ARG 163 ASP 164 LEU 165 ALA 166 GLN 167 ARG 168 ILE 169 GLN 170 LYS 171 LYS 172 PHE 173 LYS 174 LEU 175 LYS 176 LEU 177 ARG 178 LEU 179 PRO 180 GLN 181 PHE 182 VAL 183 GLN 184 ASN 185 LYS 186 ASP 187 THR 188 ASN 189 ARG 190 ILE 191 MET 192 ASP 193 LEU 194 PHE 195 ASP 196 PRO 197 THR 198 LYS 199 LYS 200 MET 201 SER 202 LYS 203 SER 204 SER 205 LYS 206 ASN 207 GLN 208 ASN 209 GLY 210 VAL 211 ILE 212 TYR 213 LEU 214 ASP 215 ASP 216 PRO 217 LYS 218 GLU 219 VAL 220 VAL 221 VAL 222 LYS 223 LYS 224 ILE 225 ARG 226 GLN 227 ALA 228 THR 229 THR 230 ASP 231 SER 232 PHE 233 ASN 234 LYS 235 ILE 236 ARG 237 PHE 238 ALA 239 SER 240 LYS 241 THR 242 GLN 243 PRO 244 GLY 245 VAL 246 THR 247 ASN 248 MET 249 LEU 250 THR 251 ILE 252 LEU 253 LYS 254 ALA 255 LEU 256 LEU 257 LYS 258 GLU 259 PRO 260 VAL 261 ASN 262 GLN 263 SER 264 LEU 265 THR 266 ASN 267 GLN 268 LEU 269 GLY 270 ASN 271 ASP 272 LEU 273 GLU 274 ALA 275 TYR 276 PHE 277 SER 278 THR 279 LYS 280 SER 281 TYR 282 LEU 283 ASP 284 LEU 285 LYS 286 ASN 287 ALA 288 LEU 289 THR 290 GLU 291 ALA 292 THR 293 VAL 294 ASN 295 LEU 296 LEU 297 VAL 298 ASN 299 ILE 300 GLN 301 ARG 302 LYS 303 ARG 304 GLU 305 GLN 306 ILE 307 SER 308 ARG 309 GLU 310 GLN 311 VAL 312 PHE 313 ASN 314 CYS 315 LEU 316 GLN 317 ALA 318 GLY 319 LYS 320 ASN 321 GLN 322 ALA 323 GLN 324 ALA 325 THR 326 ALA 327 ARG 328 THR 329 THR 330 LEU 331 ALA 332 LEU 333 PHE 334 TYR 335 ASP 336 GLY 337 PHE 338 GLY 339 LEU 340 GLY 341 SER 342 GLN 343 ASN 344 ILE 345 LYS 346

Ligands

Unit 5	WSA 1350 SO4 1362 SO4 1363
Unit 6	WSA 1351 SO4 1360 SO4 1361
Unit 7	WSA 1352 SO4 1366 SO4 1367
Unit 8	WSA 1353 SO4 1364 SO4 1365