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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF COBALAMIN BIOSYNTHESIS PRECORRIN 8W DEC (CBIT)
Keywords ALPHA AND BETA PROTEIN (A/B) CLASS, METHYLTRANSFERASE SUPERF STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN ST AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMI INITIATIVE, RSGI, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2YXD     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROBABLE COBALT-PRECORRIN-6Y C(15)-METHYLTRANSFER [DECARBOXYLATING]  A 180 1357 21
2  Protein   PROBABLE COBALT-PRECORRIN-6Y C(15)-METHYLTRANSFER [DECARBOXYLATING]  B 180 1364 21
3  Ligand   PROBABLE COBALT-PRECORRIN-6Y C(15)-METHYLTRANSFER [DECARBOXYLATING]  A 1 0 5
4  Ligand   PROBABLE COBALT-PRECORRIN-6Y C(15)-METHYLTRANSFER [DECARBOXYLATING]  B 2 0 17
5 Water     108 0 108
total       471 2721 172

Proteins
Unit 1 MSE4 ILE5 PRO6 ASP7 GLU8 GLU9 PHE10 ILE11 ARG12 ARG13 GLU14 GLY15 VAL16 PRO17 ILE18 THR19 LYS20 GLU21 GLU22 ILE23 ARG24 ALA25 VAL26 SER27 ILE28 GLY29 LYS30 LEU31 ASN32 LEU33 ASN34 LYS35 ASP36 ASP37 VAL38 VAL39 VAL40 ASP41 VAL42 GLY43 CYS44 GLY45 SER46 GLY47 GLY48 MSE49 THR50 VAL51 GLU52 ILE53 ALA54 LYS55 ARG56 CYS57 LYS58 PHE59 VAL60 TYR61 ALA62 ILE63 ASP64 TYR65 LEU66 ASP67 GLY68 ALA69 ILE70 GLU71 VAL72 THR73 LYS74 GLN75 ASN76 LEU77 ALA78 LYS79 PHE80 ASN81 ILE82 LYS83 ASN84 CYS85 GLN86 ILE87 ILE88 LYS89 GLY90 ARG91 ALA92 GLU93 ASP94 VAL95 LEU96 ASP97 LYS98 LEU99 GLU100 PHE101 ASN102 LYS103 ALA104 PHE105 ILE106 GLY107 GLY108 THR109 LYS110 ASN111 ILE112 GLU113 LYS114 ILE115 ILE116 GLU117 ILE118 LEU119 ASP120 LYS121 LYS122 LYS123 ILE124 ASN125 HIS126 ILE127 VAL128 ALA129 ASN130 THR131 ILE132 VAL133 LEU134 GLU135 ASN136 ALA137 ALA138 LYS139 ILE140 ILE141 ASN142 GLU143 PHE144 GLU145 SER146 ARG147 GLY148 TYR149 ASN150 VAL151 ASP152 ALA153 VAL154 ASN155 VAL156 PHE157 ILE158 SER159 TYR160 ALA161 LYS162 LYS163 ILE164 PRO165 SER166 GLY167 HIS168 MSE169 PHE170 LEU171 ALA172 LYS173 ASN174 PRO175 ILE176 THR177 ILE178 ILE179 LYS180 ALA181 VAL182 ARG183
Unit 2 MSE4 ILE5 PRO6 ASP7 GLU8 GLU9 PHE10 ILE11 ARG12 ARG13 GLU14 GLY15 VAL16 PRO17 ILE18 THR19 LYS20 GLU21 GLU22 ILE23 ARG24 ALA25 VAL26 SER27 ILE28 GLY29 LYS30 LEU31 ASN32 LEU33 ASN34 LYS35 ASP36 ASP37 VAL38 VAL39 VAL40 ASP41 VAL42 GLY43 CYS44 GLY45 SER46 GLY47 GLY48 MSE49 THR50 VAL51 GLU52 ILE53 ALA54 LYS55 ARG56 CYS57 LYS58 PHE59 VAL60 TYR61 ALA62 ILE63 ASP64 TYR65 LEU66 ASP67 GLY68 ALA69 ILE70 GLU71 VAL72 THR73 LYS74 GLN75 ASN76 LEU77 ALA78 LYS79 PHE80 ASN81 ILE82 LYS83 ASN84 CYS85 GLN86 ILE87 ILE88 LYS89 GLY90 ARG91 ALA92 GLU93 ASP94 VAL95 LEU96 ASP97 LYS98 LEU99 GLU100 PHE101 ASN102 LYS103 ALA104 PHE105 ILE106 GLY107 GLY108 THR109 LYS110 ASN111 ILE112 GLU113 LYS114 ILE115 ILE116 GLU117 ILE118 LEU119 ASP120 LYS121 LYS122 LYS123 ILE124 ASN125 HIS126 ILE127 VAL128 ALA129 ASN130 THR131 ILE132 VAL133 LEU134 GLU135 ASN136 ALA137 ALA138 LYS139 ILE140 ILE141 ASN142 GLU143 PHE144 GLU145 SER146 ARG147 GLY148 TYR149 ASN150 VAL151 ASP152 ALA153 VAL154 ASN155 VAL156 PHE157 ILE158 SER159 TYR160 ALA161 LYS162 LYS163 ILE164 PRO165 SER166 GLY167 HIS168 MSE169 PHE170 LEU171 ALA172 LYS173 ASN174 PRO175 ILE176 THR177 ILE178 ILE179 LYS180 ALA181 VAL182 ARG183

Ligands
Unit 3 SO41001
Unit 4 SO41002 MES2001

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany