2YTZ - Sequence, Chains, Asymmetric and Biological Units

• Title: COMPLEX STRUCTURE OF TRM1 FROM PYROCOCCUS HORIKOSHII WITH S- ADENOSYL-L-HOMOCYSTEIN IN THE ORTHORHOMBIC CRYSTAL-LATTICE
• Keywords: TRNA MODIFICATION ENZYME, GUANINE-26,N(2)-N(2)- DIMETHYLTRANSFERASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2YTZ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	N(2),N(2)-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE	A	371	2969	0
2	Protein	N(2),N(2)-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE	B	365	2908	0
3	Ligand	N(2),N(2)-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE	A	4	0	41
4	Ligand	N(2),N(2)-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE	B	2	0	31
5	Water			272	0	272
total				1014	5877	344

Proteins

Unit 1

GLU 2 LEU 3 ILE 4 GLU 5 VAL 6 GLN 7 GLU 8 GLY 9 LYS 10 ALA 11 LYS 12 ILE 13 LEU 14 ILE 15 PRO 16 LYS 17 ALA 18 GLU 19 SER 20 ILE 21 TYR 22 ASP 23 SER 24 PRO 25 VAL 26 PHE 27 TYR 28 ASN 29 PRO 30 ARG 31 MET 32 ALA 33 LEU 34 ASN 35 ARG 36 ASP 37 ILE 38 VAL 39 VAL 40 VAL 41 LEU 42 LEU 43 ASN 44 ILE 45 LEU 46 ASN 47 PRO 48 LYS 49 ILE 50 VAL 51 LEU 52 ASP 53 ALA 54 LEU 55 SER 56 ALA 57 THR 58 GLY 59 ILE 60 ARG 61 GLY 62 ILE 63 ARG 64 PHE 65 ALA 66 LEU 67 GLU 68 THR 69 PRO 70 ALA 71 GLU 72 GLU 73 VAL 74 TRP 75 LEU 76 ASN 77 ASP 78 ILE 79 SER 80 GLU 81 ASP 82 ALA 83 TYR 84 GLU 85 LEU 86 MET 87 LYS 88 ARG 89 ASN 90 VAL 91 MET 92 LEU 93 ASN 94 PHE 95 ASP 96 GLY 97 GLU 98 LEU 99 ARG 100 GLU 101 SER 102 LYS 103 GLY 104 ARG 105 ALA 106 ILE 107 LEU 108 LYS 109 GLY 110 GLU 111 LYS 112 THR 113 ILE 114 VAL 115 ILE 116 ASN 117 HIS 118 ASP 119 ASP 120 ALA 121 ASN 122 ARG 123 LEU 124 MET 125 ALA 126 GLU 127 ARG 128 HIS 129 ARG 130 TYR 131 PHE 132 HIS 133 PHE 134 ILE 135 ASP 136 LEU 137 ASP 138 PRO 139 PHE 140 GLY 141 SER 142 PRO 143 MET 144 GLU 145 PHE 146 LEU 147 ASP 148 THR 149 ALA 150 LEU 151 ARG 152 SER 153 ALA 154 LYS 155 ARG 156 ARG 157 GLY 158 ILE 159 LEU 160 GLY 161 VAL 162 THR 163 ALA 164 THR 165 ASP 166 GLY 167 ALA 168 PRO 169 LEU 170 CYS 171 GLY 172 ALA 173 HIS 174 PRO 175 ARG 176 ALA 177 CYS 178 LEU 179 ARG 180 LYS 181 TYR 182 LEU 183 ALA 184 VAL 185 PRO 186 LEU 187 ARG 188 GLY 189 GLU 190 LEU 191 CYS 192 HIS 193 GLU 194 VAL 195 GLY 196 THR 197 ARG 198 ILE 199 LEU 200 VAL 201 GLY 202 VAL 203 ILE 204 ALA 205 ARG 206 TYR 207 ALA 208 ALA 209 LYS 210 TYR 211 ASP 212 LEU 213 GLY 214 ILE 215 ASP 216 VAL 217 ILE 218 LEU 219 ALA 220 TYR 221 TYR 222 LYS 223 ASP 224 HIS 225 TYR 226 PHE 227 ARG 228 ALA 229 PHE 230 VAL 231 LYS 232 LEU 233 LYS 234 ASP 235 GLY 236 ALA 237 ARG 238 LYS 239 GLY 240 ASP 241 GLU 242 THR 243 LEU 244 GLU 245 LYS 246 LEU 247 GLY 248 TYR 249 ILE 250 TYR 251 PHE 252 ASP 253 ASP 254 LYS 255 THR 256 GLY 257 LYS 258 PHE 259 GLU 260 LEU 261 GLU 262 GLN 263 GLY 264 PHE 265 LEU 266 PRO 267 THR 268 ARG 269 PRO 270 ASN 271 ALA 272 TYR 273 GLY 274 PRO 275 VAL 276 TRP 277 LEU 278 GLY 279 PRO 280 LEU 281 LYS 282 ASP 283 GLU 284 LYS 285 ILE 286 VAL 287 SER 288 LYS 289 MET 290 VAL 291 LYS 292 GLU 293 ALA 294 GLU 295 SER 296 LEU 297 SER 298 LEU 299 ALA 300 ARG 301 LYS 302 LYS 303 GLN 304 ALA 305 LEU 306 LYS 307 LEU 308 LEU 309 LYS 310 MET 311 ILE 312 ASP 313 GLN 314 GLU 315 LEU 316 ASP 317 ILE 318 PRO 319 LEU 320 PHE 321 TYR 322 ASP 323 THR 324 HIS 325 ALA 326 ILE 327 GLY 328 ARG 329 ARG 330 LYS 336 LYS 337 VAL 338 GLU 339 GLU 340 ILE 341 ILE 342 SER 343 ALA 344 LEU 345 ARG 346 GLU 347 GLN 348 GLY 349 TYR 350 GLU 351 ALA 352 THR 353 ARG 354 THR 355 HIS 356 PHE 357 SER 358 PRO 359 THR 360 GLY 361 ILE 362 LYS 363 THR 364 SER 365 ALA 366 PRO 367 TYR 368 GLU 369 VAL 370 PHE 371 ILE 372 GLU 373 THR 374 ILE 375 LYS 376 ARG 377

Unit 2

LEU 3 ILE 4 GLU 5 VAL 6 GLN 7 GLU 8 GLY 9 LYS 10 ALA 11 LYS 12 ILE 13 LEU 14 ILE 15 PRO 16 ASP 23 SER 24 PRO 25 VAL 26 PHE 27 TYR 28 ASN 29 PRO 30 ARG 31 MET 32 ALA 33 LEU 34 ASN 35 ARG 36 ASP 37 ILE 38 VAL 39 VAL 40 VAL 41 LEU 42 LEU 43 ASN 44 ILE 45 LEU 46 ASN 47 PRO 48 LYS 49 ILE 50 VAL 51 LEU 52 ASP 53 ALA 54 LEU 55 SER 56 ALA 57 THR 58 GLY 59 ILE 60 ARG 61 GLY 62 ILE 63 ARG 64 PHE 65 ALA 66 LEU 67 GLU 68 THR 69 PRO 70 ALA 71 GLU 72 GLU 73 VAL 74 TRP 75 LEU 76 ASN 77 ASP 78 ILE 79 SER 80 GLU 81 ASP 82 ALA 83 TYR 84 GLU 85 LEU 86 MET 87 LYS 88 ARG 89 ASN 90 VAL 91 MET 92 LEU 93 ASN 94 PHE 95 ASP 96 GLY 97 GLU 98 LEU 99 ARG 100 GLU 101 SER 102 LYS 103 GLY 104 ARG 105 ALA 106 ILE 107 LEU 108 LYS 109 GLY 110 GLU 111 LYS 112 THR 113 ILE 114 VAL 115 ILE 116 ASN 117 HIS 118 ASP 119 ASP 120 ALA 121 ASN 122 ARG 123 LEU 124 MET 125 ALA 126 GLU 127 ARG 128 HIS 129 ARG 130 TYR 131 PHE 132 HIS 133 PHE 134 ILE 135 ASP 136 LEU 137 ASP 138 PRO 139 PHE 140 GLY 141 SER 142 PRO 143 MET 144 GLU 145 PHE 146 LEU 147 ASP 148 THR 149 ALA 150 LEU 151 ARG 152 SER 153 ALA 154 LYS 155 ARG 156 ARG 157 GLY 158 ILE 159 LEU 160 GLY 161 VAL 162 THR 163 ALA 164 THR 165 ASP 166 GLY 167 ALA 168 PRO 169 LEU 170 CYS 171 GLY 172 ALA 173 HIS 174 PRO 175 ARG 176 ALA 177 CYS 178 LEU 179 ARG 180 LYS 181 TYR 182 LEU 183 ALA 184 VAL 185 PRO 186 LEU 187 ARG 188 GLY 189 GLU 190 LEU 191 CYS 192 HIS 193 GLU 194 VAL 195 GLY 196 THR 197 ARG 198 ILE 199 LEU 200 VAL 201 GLY 202 VAL 203 ILE 204 ALA 205 ARG 206 TYR 207 ALA 208 ALA 209 LYS 210 TYR 211 ASP 212 LEU 213 GLY 214 ILE 215 ASP 216 VAL 217 ILE 218 LEU 219 ALA 220 TYR 221 TYR 222 LYS 223 ASP 224 HIS 225 TYR 226 PHE 227 ARG 228 ALA 229 PHE 230 VAL 231 LYS 232 LEU 233 LYS 234 ASP 235 GLY 236 ALA 237 ARG 238 LYS 239 GLY 240 ASP 241 GLU 242 THR 243 LEU 244 GLU 245 LYS 246 LEU 247 GLY 248 TYR 249 ILE 250 TYR 251 PHE 252 ASP 253 ASP 254 LYS 255 THR 256 GLY 257 LYS 258 PHE 259 GLU 260 LEU 261 GLU 262 GLN 263 GLY 264 PHE 265 LEU 266 PRO 267 THR 268 ARG 269 PRO 270 ASN 271 ALA 272 TYR 273 GLY 274 PRO 275 VAL 276 TRP 277 LEU 278 GLY 279 PRO 280 LEU 281 LYS 282 ASP 283 GLU 284 LYS 285 ILE 286 VAL 287 SER 288 LYS 289 MET 290 VAL 291 LYS 292 GLU 293 ALA 294 GLU 295 SER 296 LEU 297 SER 298 LEU 299 ALA 300 ARG 301 LYS 302 LYS 303 GLN 304 ALA 305 LEU 306 LYS 307 LEU 308 LEU 309 LYS 310 MET 311 ILE 312 ASP 313 GLN 314 GLU 315 LEU 316 ASP 317 ILE 318 PRO 319 LEU 320 PHE 321 TYR 322 ASP 323 THR 324 HIS 325 ALA 326 ILE 327 GLY 328 ARG 329 ARG 330 GLU 334 THR 335 LYS 336 LYS 337 VAL 338 GLU 339 GLU 340 ILE 341 ILE 342 SER 343 ALA 344 LEU 345 ARG 346 GLU 347 GLN 348 GLY 349 TYR 350 GLU 351 ALA 352 THR 353 ARG 354 THR 355 HIS 356 PHE 357 SER 358 PRO 359 THR 360 GLY 361 ILE 362 LYS 363 THR 364 SER 365 ALA 366 PRO 367 TYR 368 GLU 369 VAL 370 PHE 371 ILE 372 GLU 373 THR 374 ILE 375 LYS 376

Ligands

Unit 3	SAH 1001 SO4 1004 SO4 1005 SO4 1007
Unit 4	SAH 1002 SO4 1003