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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE AVRBS3-DNA COMPLEX PROVIDES NEW INSIGHTS IN THE INITIAL THYMINE-RECOGNITION MECHANISM
Keywords DNA BINDING PROTEIN-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2YPF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AVRBS3  A 675 4772 0
2  Other macromolecule   5'-D(*TP*TP*TP*AP*TP*AP*TP*AP*AP*AP*CP*CP*TP*AP  *AP*CP*CP*CP*TP*CP*TP*AP)-3'  B 22 439 0
3  Other macromolecule   5'-D(*TP*AP*GP*AP*GP*GP*GP*TP*TP*AP*GP*GP*TP*TP  *TP*AP*TP*AP*TP*AP*AP)-3'  C 21 436 0
4 Water     175 0 175
total       893 5647 175

Proteins
Unit 1 ALA185 PHE186 THR187 HIS188 ALA189 HIS190 ILE191 VAL192 ALA193 LEU195 SER197 GLN198 HIS199 PRO200 ALA201 ALA202 LEU203 ALA204 THR205 VAL206 ALA207 VAL208 LYS209 TYR210 GLN211 ASP212 MET213 ILE214 ALA215 ALA216 LEU217 PRO218 GLU219 ALA220 THR221 HIS222 GLU223 ALA224 ILE225 VAL226 ALA227 VAL228 ALA229 LYS230 GLN231 TRP232 SER233 GLY234 ALA235 ARG236 ALA237 LEU238 GLU239 ALA240 LEU241 LEU242 THR243 VAL244 ALA245 GLY246 GLU247 LEU248 ARG249 GLY250 PRO251 PRO252 LEU253 GLN254 LEU255 ASP256 THR257 GLY258 GLN259 LEU260 LEU261 LYS262 ILE263 ALA264 LYS265 ARG266 GLY267 GLY268 VAL269 THR270 ALA271 VAL272 GLU273 ALA274 VAL275 HIS276 ALA277 TRP278 ARG279 ASN280 ALA281 LEU282 THR283 GLY284 ALA285 PRO286 LEU287 ASN288 LEU289 THR290 PRO291 GLU292 GLN293 VAL294 VAL295 ALA296 ILE297 ALA298 SER299 HIS300 ASP301 GLY302 GLY303 LYS304 GLN305 ALA306 LEU307 GLU308 THR309 VAL310 GLN311 ARG312 LEU313 LEU314 PRO315 VAL316 LEU317 CYS318 GLN319 ALA320 HIS321 GLY322 LEU323 THR324 PRO325 GLN326 GLN327 VAL328 VAL329 ALA330 ILE331 ALA332 SER333 ASN334 GLY335 GLY336 GLY337 LYS338 GLN339 ALA340 LEU341 GLU342 THR343 VAL344 GLN345 ARG346 LEU347 LEU348 PRO349 VAL350 LEU351 CYS352 GLN353 ALA354 HIS355 GLY356 LEU357 THR358 PRO359 GLU360 GLN361 VAL362 VAL363 ALA364 ILE365 ALA366 SER367 ASN368 ILE369 GLY370 GLY371 LYS372 GLN373 ALA374 LEU375 GLU376 THR377 VAL378 GLN379 ALA380 LEU381 LEU382 PRO383 VAL384 LEU385 CYS386 GLN387 ALA388 HIS389 GLY390 LEU391 THR392 PRO393 GLN394 GLN395 VAL396 VAL397 ALA398 ILE399 ALA400 SER401 ASN402 GLY403 GLY404 GLY405 LYS406 GLN407 ALA408 LEU409 GLU410 THR411 VAL412 GLN413 ARG414 LEU415 LEU416 PRO417 VAL418 LEU419 CYS420 GLN421 ALA422 HIS423 GLY424 LEU425 THR426 PRO427 GLU428 GLN429 VAL430 VAL431 ALA432 ILE433 ALA434 SER435 ASN436 ILE437 GLY438 GLY439 LYS440 GLN441 ALA442 LEU443 GLU444 THR445 VAL446 GLN447 ALA448 LEU449 LEU450 PRO451 VAL452 LEU453 CYS454 GLN455 ALA456 HIS457 GLY458 LEU459 THR460 PRO461 GLU462 GLN463 VAL464 VAL465 ALA466 ILE467 ALA468 SER469 ASN470 ILE471 GLY472 GLY473 LYS474 GLN475 ALA476 LEU477 GLU478 THR479 VAL480 GLN481 ALA482 LEU483 LEU484 PRO485 VAL486 LEU487 CYS488 GLN489 ALA490 HIS491 GLY492 LEU493 THR494 PRO495 GLU496 GLN497 VAL498 VAL499 ALA500 ILE501 ALA502 SER503 ASN504 ILE505 GLY506 GLY507 LYS508 GLN509 ALA510 LEU511 GLU512 THR513 VAL514 GLN515 ALA516 LEU517 LEU518 PRO519 VAL520 LEU521 CYS522 GLN523 ALA524 HIS525 GLY526 LEU527 THR528 PRO529 GLU530 GLN531 VAL532 VAL533 ALA534 ILE535 ALA536 SER537 HIS538 ASP539 GLY540 GLY541 LYS542 GLN543 ALA544 LEU545 GLU546 THR547 VAL548 GLN549 ARG550 LEU551 LEU552 PRO553 VAL554 LEU555 CYS556 GLN557 ALA558 HIS559 GLY560 LEU561 THR562 PRO563 GLU564 GLN565 VAL566 VAL567 ALA568 ILE569 ALA570 SER571 HIS572 ASP573 GLY574 GLY575 LYS576 GLN577 ALA578 LEU579 GLU580 THR581 VAL582 GLN583 ARG584 LEU585 LEU586 PRO587 VAL588 LEU589 CYS590 GLN591 ALA592 HIS593 GLY594 LEU595 THR596 PRO597 GLN598 GLN599 VAL600 VAL601 ALA602 ILE603 ALA604 SER605 ASN606 GLY607 GLY608 GLY609 LYS610 GLN611 ALA612 LEU613 GLU614 THR615 VAL616 GLN617 ARG618 LEU619 LEU620 PRO621 VAL622 LEU623 CYS624 GLN625 ALA626 HIS627 GLY628 LEU629 THR630 PRO631 GLU632 GLN633 VAL634 VAL635 ALA636 ILE637 ALA638 SER639 ASN640 ILE641 GLY642 GLY643 LYS644 GLN645 ALA646 LEU647 GLU648 THR649 VAL650 GLN651 ALA652 LEU653 LEU654 PRO655 VAL656 LEU657 CYS658 GLN659 ALA660 HIS661 GLY662 LEU663 THR664 PRO665 GLU666 GLN667 VAL668 VAL669 ALA670 ILE671 ALA672 SER673 ASN674 ILE675 GLY676 GLY677 LYS678 GLN679 ALA680 LEU681 GLU682 THR683 VAL684 GLN685 ALA686 LEU687 LEU688 PRO689 VAL690 LEU691 CYS692 GLN693 ALA694 HIS695 GLY696 LEU697 THR698 PRO699 GLU700 GLN701 VAL702 VAL703 ALA704 ILE705 ALA706 SER707 HIS708 ASP709 GLY710 GLY711 LYS712 GLN713 ALA714 LEU715 GLU716 THR717 VAL718 GLN719 ARG720 LEU721 LEU722 PRO723 VAL724 LEU725 CYS726 GLN727 ALA728 HIS729 GLY730 LEU731 THR732 PRO733 GLU734 GLN735 VAL736 VAL737 ALA738 ILE739 ALA740 SER741 HIS742 ASP743 GLY744 GLY745 LYS746 GLN747 ALA748 LEU749 GLU750 THR751 VAL752 GLN753 ARG754 LEU755 LEU756 PRO757 VAL758 LEU759 CYS760 GLN761 ALA762 HIS763 GLY764 LEU765 THR766 PRO767 GLU768 GLN769 VAL770 VAL771 ALA772 ILE773 ALA774 SER775 HIS776 ASP777 GLY778 GLY779 LYS780 GLN781 ALA782 LEU783 GLU784 THR785 VAL786 GLN787 ARG788 LEU789 LEU790 PRO791 VAL792 LEU793 CYS794 GLN795 ALA796 HIS797 GLY798 LEU799 THR800 PRO801 GLN802 GLN803 VAL804 VAL805 ALA806 ILE807 ALA808 SER809 ASN810 GLY811 GLY812 GLY813 LYS814 GLN815 ALA816 LEU817 GLU818 THR819 VAL820 GLN821 ARG822 LEU823 LEU824 PRO825 VAL826 LEU827 CYS828 GLN829 ALA830 ALA831 GLY832 LEU833 THR834 PRO835 GLU836 GLN837 VAL838 VAL839 ALA840 ILE841 ALA842 SER843 HIS844 ASP845 GLY846 GLY847 LYS848 GLN849 ALA850 LEU851 GLU852 THR853 VAL854 GLN855 ARG856 LEU857 LEU858 PRO859 VAL860 LEU861

Other macromolecules
Unit 2 DT-2 DT-1 DT0 DA1 DT2 DA3 DT4 DA5 DA6 DA7 DC8 DC9 DT10 DA11 DA12 DC13 DC14 DC15 DT16 DC17 DT18 DA19
Unit 3 DT-19 DA-18 DG-17 DA-16 DG-15 DG-14 DG-13 DT-12 DT-11 DA-10 DG-9 DG-8 DT-7 DT-6 DT-5 DA-4 DT-3 DA-2 DT-1 DA0 DA1

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany