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Sequence, Chains, Asymmetric and Biological Units

Title INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOL INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS
Keywords HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2YLA     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BETA-N-ACETYLHEXOSAMINIDASE  A 416 3304 0
2  Protein   BETA-N-ACETYLHEXOSAMINIDASE  B 417 3317 0
3  Protein   BETA-N-ACETYLHEXOSAMINIDASE  C 408 3252 0
4  Protein   BETA-N-ACETYLHEXOSAMINIDASE  D 408 3252 0
5  Ligand    E 5 0 65
6  Ligand    F 5 0 65
7  Ligand    G 4 0 51
8  Ligand    H 5 0 65
9  Ligand   BETA-N-ACETYLHEXOSAMINIDASE  A 2 0 8
10  Ligand   BETA-N-ACETYLHEXOSAMINIDASE  B 10 0 40
11  Ligand   BETA-N-ACETYLHEXOSAMINIDASE  C 2 0 8
12  Ligand   BETA-N-ACETYLHEXOSAMINIDASE  D 1 0 4
13 Water     772 0 772
total       2455 13125 1078
Proteins
Unit 1 GLY623 SER624 HIS625 MET626 GLU627 LYS628 LEU629 ALA630 LYS631 ASN632 LYS633 VAL634 ILE635 SER636 ILE637 ASP638 ALA639 GLY640 ARG641 LYS642 TYR643 PHE644 THR645 LEU646 ASN647 GLN648 LEU649 LYS650 ARG651 ILE652 VAL653 ASP654 LYS655 ALA656 SER657 GLU658 LEU659 GLY660 TYR661 SER662 ASP663 VAL664 HIS665 LEU666 LEU667 LEU668 GLY669 ASN670 ASP671 GLY672 LEU673 ARG674 PHE675 LEU676 LEU677 ASP678 ASP679 MET680 THR681 ILE682 THR683 ALA684 ASN685 GLY686 LYS687 THR688 TYR689 ALA690 SER691 ASP692 ASP693 VAL694 LYS695 LYS696 ALA697 ILE698 ILE699 GLU700 GLY701 THR702 LYS703 ALA704 TYR705 TYR706 ASP707 ASP708 PRO709 ASN710 GLY711 THR712 ALA713 LEU714 THR715 GLN716 ALA717 GLU718 VAL719 THR720 GLU721 LEU722 ILE723 GLU724 TYR725 ALA726 LYS727 SER728 LYS729 ASP730 ILE731 GLY732 LEU733 ILE734 PRO735 ALA736 ILE737 ASN738 SER739 PRO740 GLY741 HIS742 MET743 ASP744 ALA745 MET746 LEU747 VAL748 ALA749 MET750 GLU751 LYS752 LEU753 GLY754 ILE755 LYS756 ASN757 PRO758 GLN759 ALA760 HIS761 PHE762 ASP763 LYS764 VAL765 SER766 LYS767 THR768 THR769 MET770 ASP771 LEU772 LYS773 ASN774 GLU775 GLU776 ALA777 MET778 ASN779 PHE780 VAL781 LYS782 ALA783 LEU784 ILE785 GLY786 LYS787 TYR788 MET789 ASP790 PHE791 PHE792 ALA793 GLY794 LYS795 THR796 LYS797 ILE798 PHE799 ASN800 PHE801 GLY802 THR803 ASP804 GLN805 TYR806 ALA807 ASN808 ASP809 ALA810 THR811 SER812 ALA813 GLN814 GLY815 TRP816 TYR817 TYR818 LEU819 LYS820 TRP821 TYR822 GLN823 LEU824 TYR825 GLY826 LYS827 PHE828 ALA829 GLU830 TYR831 ALA832 ASN833 THR834 LEU835 ALA836 ALA837 MET838 ALA839 LYS840 GLU841 ARG842 GLY843 LEU844 GLN845 PRO846 MET847 ALA848 PHE849 ASN850 ASP851 GLY852 PHE853 TYR854 TYR855 GLU856 ASP857 LYS858 ASP859 ASP860 VAL861 GLN862 PHE863 ASP864 LYS865 ASP866 VAL867 LEU868 ILE869 SER870 TYR871 TRP872 SER873 LYS874 GLY875 TRP876 TRP877 GLY878 TYR879 ASN880 LEU881 ALA882 SER883 PRO884 GLN885 TYR886 LEU887 ALA888 SER889 LYS890 GLY891 TYR892 LYS893 PHE894 LEU895 ASN896 THR897 ASN898 GLY899 ASP900 TRP901 TYR902 TYR903 ILE904 LEU905 GLY906 GLN907 LYS908 PRO909 GLU910 ASP911 GLY912 GLY913 GLY914 PHE915 LEU916 LYS917 LYS918 ALA919 ILE920 GLU921 ASN922 THR923 GLY924 LYS925 THR926 PRO927 PHE928 ASN929 GLN930 LEU931 ALA932 SER933 THR934 LYS935 TYR936 PRO937 GLU938 VAL939 ASP940 LEU941 PRO942 THR943 VAL944 GLY945 SER946 MET947 LEU948 SER949 ILE950 TRP951 ALA952 ASP953 ARG954 PRO955 SER956 ALA957 GLU958 TYR959 LYS960 GLU961 GLU962 GLU963 ILE964 PHE965 GLU966 LEU967 MET968 THR969 ALA970 PHE971 ALA972 ASP973 HIS974 ASN975 LYS976 ASP977 TYR978 PHE979 ARG980 ALA981 ASN982 TYR983 ASN984 ALA985 LEU986 ARG987 GLU988 GLU989 LEU990 ALA991 LYS992 ILE993 PRO994 THR995 ASN996 LEU997 SER1001 LYS1002 GLU1003 SER1004 LEU1005 GLU1006 ALA1007 LEU1008 ASP1009 ALA1010 ALA1011 LYS1012 THR1013 ALA1014 LEU1015 ASN1016 TYR1017 ASN1018 LEU1019 ASN1020 ARG1021 ASN1022 LYS1023 GLN1024 ALA1025 GLU1026 LEU1027 ASP1028 THR1029 LEU1030 VAL1031 ALA1032 ASN1033 LEU1034 LYS1035 ALA1036 ALA1037 LEU1038 GLN1039 GLY1040 LEU1041
Unit 2 GLY623 SER624 HIS625 MET626 GLU627 LYS628 LEU629 ALA630 LYS631 ASN632 LYS633 VAL634 ILE635 SER636 ILE637 ASP638 ALA639 GLY640 ARG641 LYS642 TYR643 PHE644 THR645 LEU646 ASN647 GLN648 LEU649 LYS650 ARG651 ILE652 VAL653 ASP654 LYS655 ALA656 SER657 GLU658 LEU659 GLY660 TYR661 SER662 ASP663 VAL664 HIS665 LEU666 LEU667 LEU668 GLY669 ASN670 ASP671 GLY672 LEU673 ARG674 PHE675 LEU676 LEU677 ASP678 ASP679 MET680 THR681 ILE682 THR683 ALA684 ASN685 GLY686 LYS687 THR688 TYR689 ALA690 SER691 ASP692 ASP693 VAL694 LYS695 LYS696 ALA697 ILE698 ILE699 GLU700 GLY701 THR702 LYS703 ALA704 TYR705 TYR706 ASP707 ASP708 PRO709 ASN710 GLY711 THR712 ALA713 LEU714 THR715 GLN716 ALA717 GLU718 VAL719 THR720 GLU721 LEU722 ILE723 GLU724 TYR725 ALA726 LYS727 SER728 LYS729 ASP730 ILE731 GLY732 LEU733 ILE734 PRO735 ALA736 ILE737 ASN738 SER739 PRO740 GLY741 HIS742 MET743 ASP744 ALA745 MET746 LEU747 VAL748 ALA749 MET750 GLU751 LYS752 LEU753 GLY754 ILE755 LYS756 ASN757 PRO758 GLN759 ALA760 HIS761 PHE762 ASP763 LYS764 VAL765 SER766 LYS767 THR768 THR769 MET770 ASP771 LEU772 LYS773 ASN774 GLU775 GLU776 ALA777 MET778 ASN779 PHE780 VAL781 LYS782 ALA783 LEU784 ILE785 GLY786 LYS787 TYR788 MET789 ASP790 PHE791 PHE792 ALA793 GLY794 LYS795 THR796 LYS797 ILE798 PHE799 ASN800 PHE801 GLY802 THR803 ASP804 GLN805 TYR806 ALA807 ASN808 ASP809 ALA810 THR811 SER812 ALA813 GLN814 GLY815 TRP816 TYR817 TYR818 LEU819 LYS820 TRP821 TYR822 GLN823 LEU824 TYR825 GLY826 LYS827 PHE828 ALA829 GLU830 TYR831 ALA832 ASN833 THR834 LEU835 ALA836 ALA837 MET838 ALA839 LYS840 GLU841 ARG842 GLY843 LEU844 GLN845 PRO846 MET847 ALA848 PHE849 ASN850 ASP851 GLY852 PHE853 TYR854 TYR855 GLU856 ASP857 LYS858 ASP859 ASP860 VAL861 GLN862 PHE863 ASP864 LYS865 ASP866 VAL867 LEU868 ILE869 SER870 TYR871 TRP872 SER873 LYS874 GLY875 TRP876 TRP877 GLY878 TYR879 ASN880 LEU881 ALA882 SER883 PRO884 GLN885 TYR886 LEU887 ALA888 SER889 LYS890 GLY891 TYR892 LYS893 PHE894 LEU895 ASN896 THR897 ASN898 GLY899 ASP900 TRP901 TYR902 TYR903 ILE904 LEU905 GLY906 GLN907 LYS908 PRO909 GLU910 ASP911 GLY912 GLY913 GLY914 PHE915 LEU916 LYS917 LYS918 ALA919 ILE920 GLU921 ASN922 THR923 GLY924 LYS925 THR926 PRO927 PHE928 ASN929 GLN930 LEU931 ALA932 SER933 THR934 LYS935 TYR936 PRO937 GLU938 VAL939 ASP940 LEU941 PRO942 THR943 VAL944 GLY945 SER946 MET947 LEU948 SER949 ILE950 TRP951 ALA952 ASP953 ARG954 PRO955 SER956 ALA957 GLU958 TYR959 LYS960 GLU961 GLU962 GLU963 ILE964 PHE965 GLU966 LEU967 MET968 THR969 ALA970 PHE971 ALA972 ASP973 HIS974 ASN975 LYS976 ASP977 TYR978 PHE979 ARG980 ALA981 ASN982 TYR983 ASN984 ALA985 LEU986 ARG987 GLU988 GLU989 LEU990 ALA991 LYS992 ILE993 PRO994 THR995 ASN996 LEU997 GLU998 GLY999 TYR1000 SER1001 LYS1002 GLU1003 SER1004 LEU1005 GLU1006 ALA1007 LEU1008 ASP1009 ALA1010 ALA1011 LYS1012 THR1013 ALA1014 LEU1015 ASN1016 TYR1017 ASN1018 LEU1019 ASN1020 ARG1021 ASN1022 LYS1023 GLN1024 ALA1025 GLU1026 LEU1027 ASP1028 THR1029 LEU1030 VAL1031 ALA1032 ASN1033 LEU1034 LYS1035 ALA1036 ALA1037 LEU1038 GLN1039
Unit 3 HIS625 MET626 GLU627 LYS628 LEU629 ALA630 LYS631 ASN632 LYS633 VAL634 ILE635 SER636 ILE637 ASP638 ALA639 GLY640 ARG641 LYS642 TYR643 PHE644 THR645 LEU646 ASN647 GLN648 LEU649 LYS650 ARG651 ILE652 VAL653 ASP654 LYS655 ALA656 SER657 GLU658 LEU659 GLY660 TYR661 SER662 ASP663 VAL664 HIS665 LEU666 LEU667 LEU668 GLY669 ASN670 ASP671 GLY672 LEU673 ARG674 PHE675 LEU676 LEU677 ASP678 ASP679 MET680 THR681 ILE682 THR683 ALA684 ASN685 GLY686 LYS687 THR688 TYR689 ALA690 SER691 ASP692 ASP693 VAL694 LYS695 LYS696 ALA697 ILE698 ILE699 GLU700 GLY701 THR702 LYS703 ALA704 TYR705 TYR706 ASP707 ASP708 PRO709 ASN710 GLY711 THR712 ALA713 LEU714 THR715 GLN716 ALA717 GLU718 VAL719 THR720 GLU721 LEU722 ILE723 GLU724 TYR725 ALA726 LYS727 SER728 LYS729 ASP730 ILE731 GLY732 LEU733 ILE734 PRO735 ALA736 ILE737 ASN738 SER739 PRO740 GLY741 HIS742 MET743 ASP744 ALA745 MET746 LEU747 VAL748 ALA749 MET750 GLU751 LYS752 LEU753 GLY754 ILE755 LYS756 ASN757 PRO758 GLN759 ALA760 HIS761 PHE762 ASP763 LYS764 VAL765 SER766 LYS767 THR768 THR769 MET770 ASP771 LEU772 LYS773 ASN774 GLU775 GLU776 ALA777 MET778 ASN779 PHE780 VAL781 LYS782 ALA783 LEU784 ILE785 GLY786 LYS787 TYR788 MET789 ASP790 PHE791 PHE792 ALA793 GLY794 LYS795 THR796 LYS797 ILE798 PHE799 ASN800 PHE801 GLY802 THR803 ASP804 GLN805 TYR806 ALA807 ASN808 ASP809 ALA810 THR811 SER812 ALA813 GLN814 GLY815 TRP816 TYR817 TYR818 LEU819 LYS820 TRP821 TYR822 GLN823 LEU824 TYR825 GLY826 LYS827 PHE828 ALA829 GLU830 TYR831 ALA832 ASN833 THR834 LEU835 ALA836 ALA837 MET838 ALA839 LYS840 GLU841 ARG842 GLY843 LEU844 GLN845 PRO846 MET847 ALA848 PHE849 ASN850 ASP851 GLY852 PHE853 TYR854 TYR855 GLU856 ASP857 LYS858 ASP859 ASP860 VAL861 GLN862 PHE863 ASP864 LYS865 ASP866 VAL867 LEU868 ILE869 SER870 TYR871 TRP872 SER873 LYS874 GLY875 TRP876 TRP877 GLY878 TYR879 ASN880 LEU881 ALA882 SER883 PRO884 GLN885 TYR886 LEU887 ALA888 SER889 LYS890 GLY891 TYR892 LYS893 PHE894 LEU895 ASN896 THR897 ASN898 GLY899 ASP900 TRP901 TYR902 TYR903 ILE904 LEU905 GLY906 GLN907 LYS908 PRO909 GLU910 ASP911 GLY912 GLY913 GLY914 PHE915 LEU916 LYS917 LYS918 ALA919 ILE920 GLU921 ASN922 THR923 GLY924 LYS925 THR926 PRO927 PHE928 ASN929 GLN930 LEU931 ALA932 SER933 THR934 LYS935 TYR936 PRO937 GLU938 VAL939 ASP940 LEU941 PRO942 THR943 VAL944 GLY945 SER946 MET947 LEU948 SER949 ILE950 TRP951 ALA952 ASP953 ARG954 PRO955 SER956 ALA957 GLU958 TYR959 LYS960 GLU961 GLU962 GLU963 ILE964 PHE965 GLU966 LEU967 MET968 THR969 ALA970 PHE971 ALA972 ASP973 HIS974 ASN975 LYS976 ASP977 TYR978 PHE979 ARG980 ALA981 ASN982 TYR983 ASN984 ALA985 LEU986 ARG987 GLU988 GLU989 LEU990 ALA991 LYS992 ILE993 SER1001 LYS1002 GLU1003 SER1004 LEU1005 GLU1006 ALA1007 LEU1008 ASP1009 ALA1010 ALA1011 LYS1012 THR1013 ALA1014 LEU1015 ASN1016 TYR1017 ASN1018 LEU1019 ASN1020 ARG1021 ASN1022 LYS1023 GLN1024 ALA1025 GLU1026 LEU1027 ASP1028 THR1029 LEU1030 VAL1031 ALA1032 ASN1033 LEU1034 LYS1035 ALA1036 ALA1037 LEU1038 GLN1039
Unit 4 HIS625 MET626 GLU627 LYS628 LEU629 ALA630 LYS631 ASN632 LYS633 VAL634 ILE635 SER636 ILE637 ASP638 ALA639 GLY640 ARG641 LYS642 TYR643 PHE644 THR645 LEU646 ASN647 GLN648 LEU649 LYS650 ARG651 ILE652 VAL653 ASP654 LYS655 ALA656 SER657 GLU658 LEU659 GLY660 TYR661 SER662 ASP663 VAL664 HIS665 LEU666 LEU667 LEU668 GLY669 ASN670 ASP671 GLY672 LEU673 ARG674 PHE675 LEU676 LEU677 ASP678 ASP679 MET680 THR681 ILE682 THR683 ALA684 ASN685 GLY686 LYS687 THR688 TYR689 ALA690 SER691 ASP692 ASP693 VAL694 LYS695 LYS696 ALA697 ILE698 ILE699 GLU700 GLY701 THR702 LYS703 ALA704 TYR705 TYR706 ASP707 ASP708 PRO709 ASN710 GLY711 THR712 ALA713 LEU714 THR715 GLN716 ALA717 GLU718 VAL719 THR720 GLU721 LEU722 ILE723 GLU724 TYR725 ALA726 LYS727 SER728 LYS729 ASP730 ILE731 GLY732 LEU733 ILE734 PRO735 ALA736 ILE737 ASN738 SER739 PRO740 GLY741 HIS742 MET743 ASP744 ALA745 MET746 LEU747 VAL748 ALA749 MET750 GLU751 LYS752 LEU753 GLY754 ILE755 LYS756 ASN757 PRO758 GLN759 ALA760 HIS761 PHE762 ASP763 LYS764 VAL765 SER766 LYS767 THR768 THR769 MET770 ASP771 LEU772 LYS773 ASN774 GLU775 GLU776 ALA777 MET778 ASN779 PHE780 VAL781 LYS782 ALA783 LEU784 ILE785 GLY786 LYS787 TYR788 MET789 ASP790 PHE791 PHE792 ALA793 GLY794 LYS795 THR796 LYS797 ILE798 PHE799 ASN800 PHE801 GLY802 THR803 ASP804 GLN805 TYR806 ALA807 ASN808 ASP809 ALA810 THR811 SER812 ALA813 GLN814 GLY815 TRP816 TYR817 TYR818 LEU819 LYS820 TRP821 TYR822 GLN823 LEU824 TYR825 GLY826 LYS827 PHE828 ALA829 GLU830 TYR831 ALA832 ASN833 THR834 LEU835 ALA836 ALA837 MET838 ALA839 LYS840 GLU841 ARG842 GLY843 LEU844 GLN845 PRO846 MET847 ALA848 PHE849 ASN850 ASP851 GLY852 PHE853 TYR854 TYR855 GLU856 ASP857 LYS858 ASP859 ASP860 VAL861 GLN862 PHE863 ASP864 LYS865 ASP866 VAL867 LEU868 ILE869 SER870 TYR871 TRP872 SER873 LYS874 GLY875 TRP876 TRP877 GLY878 TYR879 ASN880 LEU881 ALA882 SER883 PRO884 GLN885 TYR886 LEU887 ALA888 SER889 LYS890 GLY891 TYR892 LYS893 PHE894 LEU895 ASN896 THR897 ASN898 GLY899 ASP900 TRP901 TYR902 TYR903 ILE904 LEU905 GLY906 GLN907 LYS908 PRO909 GLU910 ASP911 GLY912 GLY913 GLY914 PHE915 LEU916 LYS917 LYS918 ALA919 ILE920 GLU921 ASN922 THR923 GLY924 LYS925 THR926 PRO927 PHE928 ASN929 GLN930 LEU931 ALA932 SER933 THR934 LYS935 TYR936 PRO937 GLU938 VAL939 ASP940 LEU941 PRO942 THR943 VAL944 GLY945 SER946 MET947 LEU948 SER949 ILE950 TRP951 ALA952 ASP953 ARG954 PRO955 SER956 ALA957 GLU958 TYR959 LYS960 GLU961 GLU962 GLU963 ILE964 PHE965 GLU966 LEU967 MET968 THR969 ALA970 PHE971 ALA972 ASP973 HIS974 ASN975 LYS976 ASP977 TYR978 PHE979 ARG980 ALA981 ASN982 TYR983 ASN984 ALA985 LEU986 ARG987 GLU988 GLU989 LEU990 ALA991 LYS992 ILE993 SER1001 LYS1002 GLU1003 SER1004 LEU1005 GLU1006 ALA1007 LEU1008 ASP1009 ALA1010 ALA1011 LYS1012 THR1013 ALA1014 LEU1015 ASN1016 TYR1017 ASN1018 LEU1019 ASN1020 ARG1021 ASN1022 LYS1023 GLN1024 ALA1025 GLU1026 LEU1027 ASP1028 THR1029 LEU1030 VAL1031 ALA1032 ASN1033 LEU1034 LYS1035 ALA1036 ALA1037 LEU1038 GLN1039
Ligands
Unit 5 NAG1 BMA2 MAN3 NAG4 NAG5
Unit 6 NAG1 BMA2 MAN3 NAG4 NAG5
Unit 7 NAG1 BMA2 MAN3 NAG4
Unit 8 NAG1 BMA2 MAN3 NAG4 NAG5
Unit 9 EDO1106 EDO1107
Unit 10 EDO1106 EDO1107 EDO1108 EDO1109 EDO1110 EDO1111 EDO1112 EDO1113 EDO1114 EDO1115
Unit 11 EDO1105 EDO1106
Unit 12 EDO1106
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany