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Sequence, Chains, Asymmetric and Biological Units

Title A SPECIFIC AND MODULAR BINDING CODE FOR CYTOSINE RECOGNITION IN PUF DOMAINS
Keywords RNA BINDING PROTEIN-RNA COMPLEX, NANOS RESPONSE ELEMENT
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2YJY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PUMILIO HOMOLOG 1  A 337 2727 0
2  Protein   PUMILIO HOMOLOG 1  B 341 2763 0
3  RNA    C 10 211 0
4  RNA    D 10 211 0
5 Water     100 0 100
total       798 5912 100
Proteins
Unit 1 GLY828 ARG829 SER830 ARG831 LEU832 LEU833 GLU834 ASP835 PHE836 ARG837 ASN838 ASN839 ARG840 TYR841 PRO842 ASN843 LEU844 GLN845 LEU846 ARG847 GLU848 ILE849 ALA850 GLY851 HIS852 ILE853 MET854 GLU855 PHE856 SER857 GLN858 ASP859 GLN860 HIS861 GLY862 SER863 ARG864 PHE865 ILE866 GLN867 LEU868 LYS869 LEU870 GLU871 ARG872 ALA873 THR874 PRO875 ALA876 GLU877 ARG878 GLN879 LEU880 VAL881 PHE882 ASN883 GLU884 ILE885 LEU886 GLN887 ALA888 ALA889 TYR890 GLN891 LEU892 MET893 VAL894 ASP895 VAL896 PHE897 GLY898 ASN899 TYR900 VAL901 ILE902 GLN903 LYS904 PHE905 PHE906 GLU907 PHE908 GLY909 SER910 LEU911 GLU912 GLN913 LYS914 LEU915 ALA916 LEU917 ALA918 GLU919 ARG920 ILE921 ARG922 GLY923 HIS924 VAL925 LEU926 SER927 LEU928 ALA929 LEU930 GLN931 MET932 TYR933 GLY934 CYS935 ARG936 VAL937 ILE938 GLN939 LYS940 ALA941 LEU942 GLU943 PHE944 ILE945 PRO946 SER947 ASP948 GLN949 GLN950 ASN951 GLU952 MET953 VAL954 ARG955 GLU956 LEU957 ASP958 GLY959 HIS960 VAL961 LEU962 LYS963 CYS964 VAL965 LYS966 ASP967 GLN968 ASN969 GLY970 ASN971 HIS972 VAL973 VAL974 GLN975 LYS976 CYS977 ILE978 GLU979 CYS980 VAL981 GLN982 PRO983 GLN984 SER985 LEU986 GLN987 PHE988 ILE989 ILE990 ASP991 ALA992 PHE993 LYS994 GLY995 GLN996 VAL997 PHE998 ALA999 LEU1000 SER1001 THR1002 HIS1003 PRO1004 TYR1005 GLY1006 CYS1007 ARG1008 VAL1009 ILE1010 GLN1011 ARG1012 ILE1013 LEU1014 GLU1015 HIS1016 CYS1017 LEU1018 PRO1019 ASP1020 GLN1021 THR1022 LEU1023 PRO1024 ILE1025 LEU1026 GLU1027 GLU1028 LEU1029 HIS1030 GLN1031 HIS1032 THR1033 GLU1034 GLN1035 LEU1036 VAL1037 GLN1038 ASP1039 GLN1040 TYR1041 GLY1042 SER1043 TYR1044 VAL1045 ILE1046 ARG1047 HIS1048 VAL1049 LEU1050 GLU1051 HIS1052 GLY1053 ARG1054 PRO1055 GLU1056 ASP1057 LYS1058 SER1059 LYS1060 ILE1061 VAL1062 ALA1063 GLU1064 ILE1065 ARG1066 GLY1067 ASN1068 VAL1069 LEU1070 VAL1071 LEU1072 SER1073 GLN1074 HIS1075 LYS1076 PHE1077 ALA1078 SER1079 ASN1080 VAL1081 VAL1082 GLU1083 LYS1084 CYS1085 VAL1086 THR1087 HIS1088 ALA1089 SER1090 ARG1091 THR1092 GLU1093 ARG1094 ALA1095 VAL1096 LEU1097 ILE1098 ASP1099 GLU1100 VAL1101 CYS1102 THR1103 MET1104 ASN1105 ASP1106 GLY1107 PRO1108 HIS1109 SER1110 ALA1111 LEU1112 TYR1113 THR1114 MET1115 MET1116 LYS1117 ASP1118 GLN1119 TYR1120 ALA1121 ASN1122 TYR1123 VAL1124 VAL1125 GLN1126 LYS1127 MET1128 ILE1129 ASP1130 VAL1131 ALA1132 GLU1133 PRO1134 GLY1135 GLN1136 ARG1137 LYS1138 ILE1139 VAL1140 MET1141 HIS1142 LYS1143 ILE1144 ARG1145 PRO1146 HIS1147 ILE1148 ALA1149 THR1150 LEU1151 ARG1152 LYS1153 TYR1154 THR1155 TYR1156 GLY1157 LYS1158 HIS1159 ILE1160 LEU1161 ALA1162 LYS1163 LEU1164
Unit 2 GLY828 ARG829 SER830 ARG831 LEU832 LEU833 GLU834 ASP835 PHE836 ARG837 ASN838 ASN839 ARG840 TYR841 PRO842 ASN843 LEU844 GLN845 LEU846 ARG847 GLU848 ILE849 ALA850 GLY851 HIS852 ILE853 MET854 GLU855 PHE856 SER857 GLN858 ASP859 GLN860 HIS861 GLY862 SER863 ARG864 PHE865 ILE866 GLN867 LEU868 LYS869 LEU870 GLU871 ARG872 ALA873 THR874 PRO875 ALA876 GLU877 ARG878 GLN879 LEU880 VAL881 PHE882 ASN883 GLU884 ILE885 LEU886 GLN887 ALA888 ALA889 TYR890 GLN891 LEU892 MET893 VAL894 ASP895 VAL896 PHE897 GLY898 ASN899 TYR900 VAL901 ILE902 GLN903 LYS904 PHE905 PHE906 GLU907 PHE908 GLY909 SER910 LEU911 GLU912 GLN913 LYS914 LEU915 ALA916 LEU917 ALA918 GLU919 ARG920 ILE921 ARG922 GLY923 HIS924 VAL925 LEU926 SER927 LEU928 ALA929 LEU930 GLN931 MET932 TYR933 GLY934 CYS935 ARG936 VAL937 ILE938 GLN939 LYS940 ALA941 LEU942 GLU943 PHE944 ILE945 PRO946 SER947 ASP948 GLN949 GLN950 ASN951 GLU952 MET953 VAL954 ARG955 GLU956 LEU957 ASP958 GLY959 HIS960 VAL961 LEU962 LYS963 CYS964 VAL965 LYS966 ASP967 GLN968 ASN969 GLY970 ASN971 HIS972 VAL973 VAL974 GLN975 LYS976 CYS977 ILE978 GLU979 CYS980 VAL981 GLN982 PRO983 GLN984 SER985 LEU986 GLN987 PHE988 ILE989 ILE990 ASP991 ALA992 PHE993 LYS994 GLY995 GLN996 VAL997 PHE998 ALA999 LEU1000 SER1001 THR1002 HIS1003 PRO1004 TYR1005 GLY1006 CYS1007 ARG1008 VAL1009 ILE1010 GLN1011 ARG1012 ILE1013 LEU1014 GLU1015 HIS1016 CYS1017 LEU1018 PRO1019 ASP1020 GLN1021 THR1022 LEU1023 PRO1024 ILE1025 LEU1026 GLU1027 GLU1028 LEU1029 HIS1030 GLN1031 HIS1032 THR1033 GLU1034 GLN1035 LEU1036 VAL1037 GLN1038 ASP1039 GLN1040 TYR1041 GLY1042 SER1043 TYR1044 VAL1045 ILE1046 ARG1047 HIS1048 VAL1049 LEU1050 GLU1051 HIS1052 GLY1053 ARG1054 PRO1055 GLU1056 ASP1057 LYS1058 SER1059 LYS1060 ILE1061 VAL1062 ALA1063 GLU1064 ILE1065 ARG1066 GLY1067 ASN1068 VAL1069 LEU1070 VAL1071 LEU1072 SER1073 GLN1074 HIS1075 LYS1076 PHE1077 ALA1078 SER1079 ASN1080 VAL1081 VAL1082 GLU1083 LYS1084 CYS1085 VAL1086 THR1087 HIS1088 ALA1089 SER1090 ARG1091 THR1092 GLU1093 ARG1094 ALA1095 VAL1096 LEU1097 ILE1098 ASP1099 GLU1100 VAL1101 CYS1102 THR1103 MET1104 ASN1105 ASP1106 GLY1107 PRO1108 HIS1109 SER1110 ALA1111 LEU1112 TYR1113 THR1114 MET1115 MET1116 LYS1117 ASP1118 GLN1119 TYR1120 ALA1121 ASN1122 TYR1123 VAL1124 VAL1125 GLN1126 LYS1127 MET1128 ILE1129 ASP1130 VAL1131 ALA1132 GLU1133 PRO1134 GLY1135 GLN1136 ARG1137 LYS1138 ILE1139 VAL1140 MET1141 HIS1142 LYS1143 ILE1144 ARG1145 PRO1146 HIS1147 ILE1148 ALA1149 THR1150 LEU1151 ARG1152 LYS1153 TYR1154 THR1155 TYR1156 GLY1157 LYS1158 HIS1159 ILE1160 LEU1161 ALA1162 LYS1163 LEU1164 GLU1165 LYS1166 TYR1167 TYR1168
Nucleic acids
Unit 3 A-1 U0 U1 G2 C3 A4 U5 A6 U7 A8
Unit 4 A-1 U0 U1 G2 C3 A4 U5 A6 U7 A8
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany