2YDR - Sequence, Chains, Asymmetric and Biological Units

• Title: CPOGA D298N IN COMPLEX WITH P53-DERIVED O-GLCNAC PEPTIDE
• Keywords: HYDROLASE-PEPTIDE COMPLEX, CELL CYCLE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2YDR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	O-GLCNACASE NAGJ	A	579	4574	0
2	Protein	CELLULAR TUMOR ANTIGEN P53	P	8	64	0
3	Ligand	O-GLCNACASE NAGJ	A	18	0	18
4	Ligand	CELLULAR TUMOR ANTIGEN P53	P	1	0	14
5	Water			103	0	103
total				709	4638	135

Proteins

Unit 1

GLN 40 VAL 41 LEU 42 VAL 43 PRO 44 ASN 45 LEU 46 ASN 47 PRO 48 THR 49 PRO 50 GLU 51 ASN 52 LEU 53 GLU 54 VAL 55 VAL 56 GLY 57 ASP 58 GLY 59 PHE 60 LYS 61 ILE 62 THR 63 SER 64 SER 65 ILE 66 ASN 67 LEU 68 VAL 69 GLY 70 GLU 71 GLU 72 GLU 73 ALA 74 ASP 75 GLU 76 ASN 77 ALA 78 VAL 79 ASN 80 ALA 81 LEU 82 ARG 83 GLU 84 PHE 85 LEU 86 THR 87 ALA 88 ASN 89 ASN 90 ILE 91 GLU 92 ILE 93 ASN 94 SER 95 GLU 96 ASN 97 ASP 98 PRO 99 ASN 100 SER 101 THR 102 THR 103 LEU 104 ILE 105 ILE 106 GLY 107 GLU 108 VAL 109 ASP 110 ASP 111 ASP 112 ILE 113 PRO 114 GLU 115 LEU 116 ASP 117 GLU 118 ALA 119 LEU 120 ASN 121 GLY 122 THR 123 THR 124 ALA 125 GLU 126 ASN 127 LEU 128 LYS 129 GLU 130 GLU 131 GLY 132 TYR 133 ALA 134 LEU 135 VAL 136 SER 137 ASN 138 ASP 139 GLY 140 LYS 141 ILE 142 ALA 143 ILE 144 GLU 145 GLY 146 LYS 147 ASP 148 GLY 149 ASP 150 GLY 151 THR 152 PHE 153 TYR 154 GLY 155 VAL 156 GLN 157 THR 158 PHE 159 LYS 160 GLN 161 LEU 162 VAL 163 LYS 164 GLU 165 SER 166 ASN 167 ILE 168 PRO 169 GLU 170 VAL 171 ASN 172 ILE 173 THR 174 ASP 175 TYR 176 PRO 177 THR 178 VAL 179 SER 180 ALA 181 ARG 182 GLY 183 ILE 184 VAL 185 GLU 186 GLY 187 PHE 188 TYR 189 GLY 190 THR 191 PRO 192 TRP 193 THR 194 HIS 195 GLN 196 ASP 197 ARG 198 LEU 199 ASP 200 GLN 201 ILE 202 LYS 203 PHE 204 TYR 205 GLY 206 GLU 207 ASN 208 LYS 209 LEU 210 ASN 211 THR 212 TYR 213 ILE 214 TYR 215 ALA 216 PRO 217 LYS 218 ASP 219 ASP 220 PRO 221 TYR 222 HIS 223 ARG 224 GLU 225 LYS 226 TRP 227 ARG 228 GLU 229 PRO 230 TYR 231 PRO 232 GLU 233 SER 234 GLU 235 MET 236 GLN 237 ARG 238 MET 239 GLN 240 GLU 241 LEU 242 ILE 243 ASN 244 ALA 245 SER 246 ALA 247 GLU 248 ASN 249 LYS 250 VAL 251 ASP 252 PHE 253 VAL 254 PHE 255 GLY 256 ILE 257 SER 258 PRO 259 GLY 260 ILE 261 ASP 262 ILE 263 ARG 264 PHE 265 ASP 266 GLY 267 ASP 268 ALA 269 GLY 270 GLU 271 GLU 272 ASP 273 PHE 274 ASN 275 HIS 276 LEU 277 ILE 278 THR 279 LYS 280 ALA 281 GLU 282 SER 283 LEU 284 TYR 285 ASP 286 MET 287 GLY 288 VAL 289 ARG 290 SER 291 PHE 292 ALA 293 ILE 294 TYR 295 TRP 296 ASP 297 ASN 298 ILE 299 GLN 300 ASP 301 LYS 302 SER 303 ALA 304 ALA 305 LYS 306 HIS 307 ALA 308 GLN 309 VAL 310 LEU 311 ASN 312 ARG 313 PHE 314 ASN 315 GLU 316 GLU 317 PHE 318 VAL 319 LYS 320 ALA 321 LYS 322 GLY 323 ASP 324 VAL 325 LYS 326 PRO 327 LEU 328 ILE 329 THR 330 VAL 331 PRO 332 THR 333 GLU 334 TYR 335 ASP 336 THR 337 GLY 338 ALA 339 MET 340 VAL 341 SER 342 ASN 343 GLY 344 GLN 345 PRO 346 ARG 347 ALA 348 TYR 349 THR 350 ARG 351 ILE 352 PHE 353 ALA 354 GLU 355 THR 356 VAL 357 ASP 358 PRO 359 SER 360 ILE 361 GLU 362 VAL 363 MET 364 TRP 365 THR 366 GLY 367 PRO 368 GLY 369 VAL 370 VAL 371 THR 372 ASN 373 GLU 374 ILE 375 PRO 376 LEU 377 SER 378 ASP 379 ALA 380 GLN 381 LEU 382 ILE 383 SER 384 GLY 385 ILE 386 TYR 387 ASP 388 ARG 389 ASN 390 MET 391 ALA 392 VAL 393 TRP 394 TRP 395 ASN 396 TYR 397 PRO 398 VAL 399 THR 400 ASP 401 TYR 402 PHE 403 LYS 404 GLY 405 LYS 406 LEU 407 ALA 408 LEU 409 GLY 410 PRO 411 MET 412 HIS 413 GLY 414 LEU 415 ASP 416 LYS 417 GLY 418 LEU 419 ASN 420 GLN 421 TYR 422 VAL 423 ASP 424 PHE 425 PHE 426 THR 427 VAL 428 ASN 429 PRO 430 MET 431 GLU 432 HIS 433 ALA 434 GLU 435 LEU 436 SER 437 LYS 438 ILE 439 SER 440 ILE 441 HIS 442 THR 443 ALA 444 ALA 445 ASP 446 TYR 447 SER 448 TRP 449 ASN 450 MET 451 ASP 452 ASN 453 TYR 454 ASP 455 TYR 456 ASP 457 LYS 458 ALA 459 TRP 460 ASN 461 ARG 462 ALA 463 ILE 464 ASP 465 MET 466 LEU 467 TYR 468 GLY 469 ASP 470 LEU 471 ALA 472 GLU 473 ASP 474 MET 475 LYS 476 VAL 477 PHE 478 ALA 479 ASN 480 HIS 481 SER 482 THR 483 ARG 484 MET 485 ASP 486 ASN 487 LYS 488 THR 489 TRP 490 ALA 491 LYS 492 SER 493 GLY 494 ARG 495 GLU 496 ASP 497 ALA 498 PRO 499 GLU 500 LEU 501 ARG 502 ALA 503 LYS 504 MET 505 ASP 506 GLU 507 LEU 508 TRP 509 ASN 510 LYS 511 LEU 512 SER 513 SER 514 LYS 515 GLU 516 ASP 517 ALA 518 SER 519 ALA 520 LEU 521 ILE 522 GLU 523 GLU 524 LEU 525 TYR 526 GLY 527 GLU 528 PHE 529 ALA 530 ARG 531 MET 532 GLU 533 GLU 534 ALA 535 CYS 536 ASN 537 ASN 538 LEU 539 LYS 540 ALA 541 ASN 542 LEU 543 PRO 544 GLU 545 VAL 546 ALA 547 LEU 548 GLU 549 GLU 550 CYS 551 SER 552 ARG 553 GLN 554 LEU 555 ASP 556 GLU 557 LEU 558 ILE 559 THR 560 LEU 561 ALA 562 GLN 563 GLY 564 ASP 565 LYS 566 ALA 567 SER 568 LEU 569 ASP 570 MET 571 ILE 572 VAL 573 ALA 574 GLN 575 LEU 576 ASN 577 GLU 578 ASP 579 THR 580 GLU 581 ALA 582 TYR 583 GLU 584 SER 585 ALA 586 LYS 587 GLU 588 ILE 589 ALA 590 GLN 591 ASN 592 LYS 593 LEU 594 ASN 595 THR 596 ALA 597 LEU 598 SER 599 SER 600 PHE 601 ALA 602 VAL 603 ILE 604 SER 605 GLU 606 LYS 607 VAL 608 ALA 609 GLN 610 SER 611 PHE 612 ILE 613 GLN 614 GLU 615 ALA 616 LEU 617 SER 618

Unit 2

LEU 145 TRP 146 VAL 147 ASP 148 SER 149 THR 150 PRO 151 PRO 152

Ligands

Unit 3	CD 1620 CD 1621 CD 1622 CD 1623 CD 1624 CD 1625 CD 1626 CD 1627 CD 1628 CD 1629 CD 1630 CD 1631 CD 1632 CD 1633 CD 1634 CD 1635 CD 1636 CD 1637
Unit 4	NAG 1153