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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GLYCYL RADICAL ENZYME WITH BOUND SUBSTR
Keywords LYASE, RADICAL CHEMISTRY, METALLOENZYME, IRON-SULFUR CENTER
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2YAJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 869 13512 0
2  Protein    B 86 1249 0
3  Protein    C 871 13538 0
4  Protein    D 86 1249 0
5  Ligand    A 1 0 19
6  Ligand    B 2 0 16
7  Ligand    C 1 0 19
8  Ligand    D 2 0 16
9 Water     2098 0 2098
total       4016 29548 2168
Proteins
Unit 1 ASP29 ILE30 PRO31 GLU32 ALA33 LYS34 GLU35 SER36 THR37 GLN38 LYS39 LEU40 MET41 ASP42 ILE43 TYR44 TYR45 THR46 LEU47 LYS48 VAL49 THR50 ALA51 ASP52 MET53 GLU54 ALA55 ALA56 TYR57 TRP58 TYR59 ASN60 ARG61 THR62 TRP63 TRP64 GLU65 ASN66 ASP67 GLY68 GLU69 VAL70 ILE71 GLU72 VAL73 ARG74 ARG75 ALA76 LYS77 ALA78 VAL79 ALA80 ALA81 SER82 LEU83 SER84 HIS85 MET86 THR87 PRO88 THR89 ILE90 LEU91 PRO92 TYR93 GLU94 LYS95 LEU96 VAL97 MET98 ASN99 LYS100 THR101 LYS102 ASN103 VAL104 ARG105 GLY106 ALA107 PHE108 PRO109 PHE110 PRO111 TRP112 VAL113 CYS114 ALA115 SER116 PHE117 PHE118 ASN119 ALA120 GLN121 ALA122 GLU123 ALA124 LEU125 MET126 ASN127 GLU128 VAL129 ASP130 ALA131 PRO132 ALA133 GLU134 ASN135 GLU136 ALA137 ASP138 SER139 VAL140 SER141 VAL142 VAL143 GLY144 ALA145 GLY146 GLY147 GLY148 ASN149 VAL150 THR151 GLU152 SER153 TYR154 GLY155 ASN156 VAL157 ILE158 SER159 ILE160 ALA161 LYS162 LYS163 PHE164 GLY165 MET166 ARG167 LYS168 GLU169 GLU170 ILE171 PRO172 VAL173 LEU174 VAL175 LYS176 THR177 SER178 LYS179 PRO180 TRP181 GLU182 GLY183 ILE184 SER185 VAL186 GLU187 GLU188 LEU189 SER190 ASN191 LYS192 TYR193 SER194 LYS195 MET196 THR197 PRO198 GLY199 TYR200 ASP201 GLN202 PHE203 LYS204 ASN205 ILE206 MET207 GLU208 SER209 VAL210 ILE211 CYS212 MET213 PHE214 ASP215 SER216 PHE217 ALA218 ILE219 PRO220 GLN221 GLY222 ARG223 GLU224 VAL225 ILE226 ASN227 TYR228 TYR229 MET230 PRO231 LEU232 GLN233 TYR234 GLY235 PHE236 ASP237 GLY238 ILE239 ILE240 LYS241 LEU242 CYS243 ASP244 GLU245 LYS246 ILE247 ALA248 GLU249 VAL250 MET251 GLY252 GLU253 ALA254 GLY255 ASP256 ASP257 GLY258 ASP259 PHE260 GLY261 MET262 SER263 ARG264 GLY265 TYR266 TYR267 TYR268 ALA269 ALA270 MET271 LYS272 GLU273 ILE274 THR275 LYS276 GLY277 LEU278 SER279 ALA280 TRP281 CYS282 GLU283 ASN284 TYR285 SER286 LYS287 ARG288 ALA289 LYS290 TYR291 LEU292 ALA293 SER294 ILE295 GLU296 THR297 ASP298 SER299 GLU300 ILE301 LYS302 ALA303 ASN304 TYR305 GLU306 LYS307 ILE308 GLU309 GLU310 VAL311 MET312 GLY313 ASN314 ILE315 ALA316 HIS317 LYS318 LYS319 PRO320 ALA321 ASN322 PHE323 TRP324 GLU325 ALA326 ILE327 GLN328 MET329 THR330 LEU331 CYS332 CYS333 HIS334 PHE335 GLY336 VAL337 VAL338 ASN339 GLU340 ASP341 PRO342 GLN343 SER344 GLY345 LEU346 SER347 ILE348 GLY349 ARG350 LEU351 GLY352 GLN353 VAL354 LEU355 GLN356 PRO357 PHE358 TYR359 GLU360 LYS361 ASP362 VAL363 GLU364 ASP365 GLY366 ILE367 MET368 THR369 ASP370 GLU371 GLU372 VAL373 ILE374 GLU375 LEU376 LEU377 GLU378 LEU379 TYR380 ARG381 ILE382 LYS383 ILE384 THR385 CYS386 ILE387 GLU388 CYS389 PHE390 ALA391 SER392 ALA393 GLY394 VAL395 SER396 GLY397 GLY398 VAL399 LEU400 SER401 GLY402 ASN403 THR404 PHE405 ASN406 ASN407 LEU408 SER409 LEU410 GLY411 GLY412 GLN413 ASN414 TYR415 ASP416 GLY417 LEU418 SER419 ALA420 VAL421 THR422 PRO423 LEU424 GLU425 TYR426 LEU427 ILE428 VAL429 GLU430 ALA431 GLY432 MET433 ARG434 ASN435 GLN436 THR437 PRO438 GLN439 PRO440 THR441 LEU442 SER443 VAL444 LEU445 TYR446 ASP447 GLU448 LYS449 THR450 PRO451 GLU452 ASP453 PHE454 LEU455 MET456 LYS457 ALA458 ALA459 SER460 CYS461 THR462 LYS463 LEU464 GLY465 LEU466 GLY467 TYR468 PRO469 ALA470 TRP471 MET472 ASN473 ASN474 GLN475 THR476 GLY477 MET478 ASN479 PHE480 MET481 MET482 ARG483 ASN484 TYR485 GLY486 PRO487 GLU488 GLY489 MET490 ASP491 LEU492 HIS493 ASP494 ALA495 ARG496 ALA497 TRP498 CYS499 LEU500 GLY501 GLY502 CYS503 LEU504 GLU505 SER506 ALA507 PRO508 GLY509 CYS510 PHE511 LEU512 PRO513 LEU514 GLU515 TYR516 ASN517 GLY518 LYS519 VAL520 THR521 MET522 ILE523 PRO524 GLY525 GLY526 ALA527 SER528 PRO529 THR530 CYS531 GLY532 THR533 GLY534 VAL535 HIS536 PHE537 ILE538 GLY539 MET540 PRO541 LYS542 VAL543 LEU544 GLU545 LEU546 VAL547 LEU548 THR549 ASN550 GLY551 LEU552 ASP553 LYS554 ARG555 THR556 GLY557 LYS558 GLN559 VAL560 TYR561 PRO562 PRO563 HIS564 ASN565 LYS566 LYS567 LEU568 ASP569 SER570 TYR571 GLU572 THR573 MET574 VAL575 ASN576 GLN577 TRP578 LYS579 GLU580 TYR581 MET582 GLU583 LEU584 THR585 THR586 ASP587 VAL588 VAL589 ASN590 ARG591 CYS592 ASN593 ASN594 ILE595 GLN596 MET597 ASP598 ILE599 TRP600 ARG601 LYS602 TYR603 ASN604 MET605 PRO606 ALA607 VAL608 ASN609 SER610 LEU611 LEU612 LYS613 PRO614 ASP615 CYS616 PHE617 LYS618 LYS619 GLY620 LYS621 HIS622 ILE623 GLY624 THR625 MET626 GLY627 ALA628 ARG629 TYR630 ASN631 SER632 CYS633 ILE634 ASN635 PHE636 GLU637 SER638 CYS639 GLY640 THR641 ILE642 THR643 PHE644 VAL645 ASN646 SER647 LEU648 SER649 SER650 ILE651 LYS652 LYS653 ASN654 VAL655 PHE656 ASP657 ASP658 SER659 LYS660 PHE661 THR662 ILE663 GLU664 GLU665 MET666 THR667 ASP668 ALA669 MET670 LEU671 ASN672 ASN673 PHE674 GLY675 PHE676 LYS677 THR678 ALA679 TYR680 GLU681 THR682 GLU683 VAL684 PHE685 SER686 PRO687 ASP688 PHE689 ARG690 GLU691 SER692 THR693 ASP694 LYS695 SER696 THR697 LYS698 TYR699 GLU700 LYS701 ILE702 PHE703 ALA704 ALA705 CYS706 VAL707 ASN708 ALA709 PRO710 LYS711 TYR712 GLY713 ASN714 ALA715 ASP716 LYS717 TYR718 ALA719 ASP720 GLU721 ILE722 PHE723 LYS724 ALA725 TYR726 HIS727 TYR728 TYR729 ILE730 TYR731 ASP732 MET733 THR734 HIS735 LYS736 PHE737 ARG738 SER739 TYR740 TYR741 GLY742 LYS743 PRO744 LEU745 TYR746 LEU747 CYS748 GLN749 ILE750 SER751 VAL752 SER753 THR754 HIS755 GLY756 PRO757 GLN758 GLY759 PHE760 VAL761 THR762 LEU763 ALA764 THR765 ALA766 ASP767 GLY768 ARG769 LEU770 ALA771 GLY772 THR773 THR774 TYR775 SER776 ASP777 GLY778 SER779 VAL780 SER781 ALA782 ALA783 ALA784 GLY785 THR786 ASP787 LYS788 ASN789 GLY790 ILE791 TYR792 ALA793 ILE794 PHE795 GLU796 SER797 ALA798 THR799 VAL800 TYR801 ASP802 HIS803 SER804 MET805 HIS806 GLN807 ASN808 ALA809 GLN810 MET811 ASN812 LEU813 LYS814 LEU815 HIS816 PRO817 THR818 ALA819 VAL820 LYS821 GLY822 ILE823 ASN824 GLY825 THR826 ARG827 LYS828 LEU829 LEU830 ASP831 LEU832 VAL833 ARG834 ALA835 TYR836 MET837 ARG838 LYS839 GLY840 GLY841 PHE842 HIS843 VAL844 GLN845 PHE846 ASN847 VAL848 VAL849 ASP850 SER851 LYS852 THR853 LEU854 ARG855 ASP856 ALA857 GLN858 LEU859 THR860 PRO861 GLU862 LYS863 TYR864 ARG865 GLU866 LEU867 MET868 VAL869 ARG870 VAL871 ALA872 GLY873 PHE874 THR875 GLN876 TYR877 TRP878 CYS879 GLU880 ILE881 GLY882 LYS883 PRO884 ILE885 GLN886 ASP887 GLU888 VAL889 ILE890 TYR891 ARG892 THR893 GLU894 TYR895 ASP896 LYS897
Unit 2 MET1 ARG2 HIS3 TYR4 ASP5 CYS6 LYS7 ASN8 TYR9 ILE10 ASN11 LEU12 ASP13 CYS14 GLU15 LYS16 GLY17 LEU18 CYS19 ALA20 LEU21 THR22 LYS23 GLY24 MET25 VAL26 PRO27 ILE28 ASP29 GLY30 GLU31 GLY32 SER33 GLU34 ALA35 CYS36 PRO37 ASN38 PHE39 LYS40 PRO41 ALA42 GLU43 LYS44 CYS45 GLY46 ASN47 CYS48 LYS49 ASN50 PHE51 CYS52 ASN53 PRO54 ASP55 LYS56 TYR57 GLY58 LEU59 GLY60 THR61 CYS62 THR63 GLY64 LEU65 GLU66 LYS67 GLU68 ASN69 TRP70 ALA71 TYR72 ALA73 THR74 CYS75 GLY76 ALA77 SER78 ALA79 CYS80 PRO81 SER82 TYR83 LYS84 ALA85 GLU86
Unit 3 GLU27 ALA28 ASP29 ILE30 PRO31 GLU32 ALA33 LYS34 GLU35 SER36 THR37 GLN38 LYS39 LEU40 MET41 ASP42 ILE43 TYR44 TYR45 THR46 LEU47 LYS48 VAL49 THR50 ALA51 ASP52 MET53 GLU54 ALA55 ALA56 TYR57 TRP58 TYR59 ASN60 ARG61 THR62 TRP63 TRP64 GLU65 ASN66 ASP67 GLY68 GLU69 VAL70 ILE71 GLU72 VAL73 ARG74 ARG75 ALA76 LYS77 ALA78 VAL79 ALA80 ALA81 SER82 LEU83 SER84 HIS85 MET86 THR87 PRO88 THR89 ILE90 LEU91 PRO92 TYR93 GLU94 LYS95 LEU96 VAL97 MET98 ASN99 LYS100 THR101 LYS102 ASN103 VAL104 ARG105 GLY106 ALA107 PHE108 PRO109 PHE110 PRO111 TRP112 VAL113 CYS114 ALA115 SER116 PHE117 PHE118 ASN119 ALA120 GLN121 ALA122 GLU123 ALA124 LEU125 MET126 ASN127 GLU128 VAL129 ASP130 ALA131 PRO132 ALA133 GLU134 ASN135 GLU136 ALA137 ASP138 SER139 VAL140 SER141 VAL142 VAL143 GLY144 ALA145 GLY146 GLY147 GLY148 ASN149 VAL150 THR151 GLU152 SER153 TYR154 GLY155 ASN156 VAL157 ILE158 SER159 ILE160 ALA161 LYS162 LYS163 PHE164 GLY165 MET166 ARG167 LYS168 GLU169 GLU170 ILE171 PRO172 VAL173 LEU174 VAL175 LYS176 THR177 SER178 LYS179 PRO180 TRP181 GLU182 GLY183 ILE184 SER185 VAL186 GLU187 GLU188 LEU189 SER190 ASN191 LYS192 TYR193 SER194 LYS195 MET196 THR197 PRO198 GLY199 TYR200 ASP201 GLN202 PHE203 LYS204 ASN205 ILE206 MET207 GLU208 SER209 VAL210 ILE211 CYS212 MET213 PHE214 ASP215 SER216 PHE217 ALA218 ILE219 PRO220 GLN221 GLY222 ARG223 GLU224 VAL225 ILE226 ASN227 TYR228 TYR229 MET230 PRO231 LEU232 GLN233 TYR234 GLY235 PHE236 ASP237 GLY238 ILE239 ILE240 LYS241 LEU242 CYS243 ASP244 GLU245 LYS246 ILE247 ALA248 GLU249 VAL250 MET251 GLY252 GLU253 ALA254 GLY255 ASP256 ASP257 GLY258 ASP259 PHE260 GLY261 MET262 SER263 ARG264 GLY265 TYR266 TYR267 TYR268 ALA269 ALA270 MET271 LYS272 GLU273 ILE274 THR275 LYS276 GLY277 LEU278 SER279 ALA280 TRP281 CYS282 GLU283 ASN284 TYR285 SER286 LYS287 ARG288 ALA289 LYS290 TYR291 LEU292 ALA293 SER294 ILE295 GLU296 THR297 ASP298 SER299 GLU300 ILE301 LYS302 ALA303 ASN304 TYR305 GLU306 LYS307 ILE308 GLU309 GLU310 VAL311 MET312 GLY313 ASN314 ILE315 ALA316 HIS317 LYS318 LYS319 PRO320 ALA321 ASN322 PHE323 TRP324 GLU325 ALA326 ILE327 GLN328 MET329 THR330 LEU331 CYS332 CYS333 HIS334 PHE335 GLY336 VAL337 VAL338 ASN339 GLU340 ASP341 PRO342 GLN343 SER344 GLY345 LEU346 SER347 ILE348 GLY349 ARG350 LEU351 GLY352 GLN353 VAL354 LEU355 GLN356 PRO357 PHE358 TYR359 GLU360 LYS361 ASP362 VAL363 GLU364 ASP365 GLY366 ILE367 MET368 THR369 ASP370 GLU371 GLU372 VAL373 ILE374 GLU375 LEU376 LEU377 GLU378 LEU379 TYR380 ARG381 ILE382 LYS383 ILE384 THR385 CYS386 ILE387 GLU388 CYS389 PHE390 ALA391 SER392 ALA393 GLY394 VAL395 SER396 GLY397 GLY398 VAL399 LEU400 SER401 GLY402 ASN403 THR404 PHE405 ASN406 ASN407 LEU408 SER409 LEU410 GLY411 GLY412 GLN413 ASN414 TYR415 ASP416 GLY417 LEU418 SER419 ALA420 VAL421 THR422 PRO423 LEU424 GLU425 TYR426 LEU427 ILE428 VAL429 GLU430 ALA431 GLY432 MET433 ARG434 ASN435 GLN436 THR437 PRO438 GLN439 PRO440 THR441 LEU442 SER443 VAL444 LEU445 TYR446 ASP447 GLU448 LYS449 THR450 PRO451 GLU452 ASP453 PHE454 LEU455 MET456 LYS457 ALA458 ALA459 SER460 CYS461 THR462 LYS463 LEU464 GLY465 LEU466 GLY467 TYR468 PRO469 ALA470 TRP471 MET472 ASN473 ASN474 GLN475 THR476 GLY477 MET478 ASN479 PHE480 MET481 MET482 ARG483 ASN484 TYR485 GLY486 PRO487 GLU488 GLY489 MET490 ASP491 LEU492 HIS493 ASP494 ALA495 ARG496 ALA497 TRP498 CYS499 LEU500 GLY501 GLY502 CYS503 LEU504 GLU505 SER506 ALA507 PRO508 GLY509 CYS510 PHE511 LEU512 PRO513 LEU514 GLU515 TYR516 ASN517 GLY518 LYS519 VAL520 THR521 MET522 ILE523 PRO524 GLY525 GLY526 ALA527 SER528 PRO529 THR530 CYS531 GLY532 THR533 GLY534 VAL535 HIS536 PHE537 ILE538 GLY539 MET540 PRO541 LYS542 VAL543 LEU544 GLU545 LEU546 VAL547 LEU548 THR549 ASN550 GLY551 LEU552 ASP553 LYS554 ARG555 THR556 GLY557 LYS558 GLN559 VAL560 TYR561 PRO562 PRO563 HIS564 ASN565 LYS566 LYS567 LEU568 ASP569 SER570 TYR571 GLU572 THR573 MET574 VAL575 ASN576 GLN577 TRP578 LYS579 GLU580 TYR581 MET582 GLU583 LEU584 THR585 THR586 ASP587 VAL588 VAL589 ASN590 ARG591 CYS592 ASN593 ASN594 ILE595 GLN596 MET597 ASP598 ILE599 TRP600 ARG601 LYS602 TYR603 ASN604 MET605 PRO606 ALA607 VAL608 ASN609 SER610 LEU611 LEU612 LYS613 PRO614 ASP615 CYS616 PHE617 LYS618 LYS619 GLY620 LYS621 HIS622 ILE623 GLY624 THR625 MET626 GLY627 ALA628 ARG629 TYR630 ASN631 SER632 CYS633 ILE634 ASN635 PHE636 GLU637 SER638 CYS639 GLY640 THR641 ILE642 THR643 PHE644 VAL645 ASN646 SER647 LEU648 SER649 SER650 ILE651 LYS652 LYS653 ASN654 VAL655 PHE656 ASP657 ASP658 SER659 LYS660 PHE661 THR662 ILE663 GLU664 GLU665 MET666 THR667 ASP668 ALA669 MET670 LEU671 ASN672 ASN673 PHE674 GLY675 PHE676 LYS677 THR678 ALA679 TYR680 GLU681 THR682 GLU683 VAL684 PHE685 SER686 PRO687 ASP688 PHE689 ARG690 GLU691 SER692 THR693 ASP694 LYS695 SER696 THR697 LYS698 TYR699 GLU700 LYS701 ILE702 PHE703 ALA704 ALA705 CYS706 VAL707 ASN708 ALA709 PRO710 LYS711 TYR712 GLY713 ASN714 ALA715 ASP716 LYS717 TYR718 ALA719 ASP720 GLU721 ILE722 PHE723 LYS724 ALA725 TYR726 HIS727 TYR728 TYR729 ILE730 TYR731 ASP732 MET733 THR734 HIS735 LYS736 PHE737 ARG738 SER739 TYR740 TYR741 GLY742 LYS743 PRO744 LEU745 TYR746 LEU747 CYS748 GLN749 ILE750 SER751 VAL752 SER753 THR754 HIS755 GLY756 PRO757 GLN758 GLY759 PHE760 VAL761 THR762 LEU763 ALA764 THR765 ALA766 ASP767 GLY768 ARG769 LEU770 ALA771 GLY772 THR773 THR774 TYR775 SER776 ASP777 GLY778 SER779 VAL780 SER781 ALA782 ALA783 ALA784 GLY785 THR786 ASP787 LYS788 ASN789 GLY790 ILE791 TYR792 ALA793 ILE794 PHE795 GLU796 SER797 ALA798 THR799 VAL800 TYR801 ASP802 HIS803 SER804 MET805 HIS806 GLN807 ASN808 ALA809 GLN810 MET811 ASN812 LEU813 LYS814 LEU815 HIS816 PRO817 THR818 ALA819 VAL820 LYS821 GLY822 ILE823 ASN824 GLY825 THR826 ARG827 LYS828 LEU829 LEU830 ASP831 LEU832 VAL833 ARG834 ALA835 TYR836 MET837 ARG838 LYS839 GLY840 GLY841 PHE842 HIS843 VAL844 GLN845 PHE846 ASN847 VAL848 VAL849 ASP850 SER851 LYS852 THR853 LEU854 ARG855 ASP856 ALA857 GLN858 LEU859 THR860 PRO861 GLU862 LYS863 TYR864 ARG865 GLU866 LEU867 MET868 VAL869 ARG870 VAL871 ALA872 GLY873 PHE874 THR875 GLN876 TYR877 TRP878 CYS879 GLU880 ILE881 GLY882 LYS883 PRO884 ILE885 GLN886 ASP887 GLU888 VAL889 ILE890 TYR891 ARG892 THR893 GLU894 TYR895 ASP896 LYS897
Unit 4 MET1 ARG2 HIS3 TYR4 ASP5 CYS6 LYS7 ASN8 TYR9 ILE10 ASN11 LEU12 ASP13 CYS14 GLU15 LYS16 GLY17 LEU18 CYS19 ALA20 LEU21 THR22 LYS23 GLY24 MET25 VAL26 PRO27 ILE28 ASP29 GLY30 GLU31 GLY32 SER33 GLU34 ALA35 CYS36 PRO37 ASN38 PHE39 LYS40 PRO41 ALA42 GLU43 LYS44 CYS45 GLY46 ASN47 CYS48 LYS49 ASN50 PHE51 CYS52 ASN53 PRO54 ASP55 LYS56 TYR57 GLY58 LEU59 GLY60 THR61 CYS62 THR63 GLY64 LEU65 GLU66 LYS67 GLU68 ASN69 TRP70 ALA71 TYR72 ALA73 THR74 CYS75 GLY76 ALA77 SER78 ALA79 CYS80 PRO81 SER82 TYR83 LYS84 ALA85 GLU86
Ligands
Unit 5 4HP1898
Unit 6 SF487 SF488
Unit 7 4HP1898
Unit 8 SF487 SF488
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany