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Title | STRUCTURE-BASED DESIGN OF A NEW SERIES OF D-GLUTAMIC ACID-BA INHIBITORS OF BACTERIAL MURD LIGASE | |
Keywords | ATP-BINDING, CELL CYCLE, CELL DIVISION, CELL SHAPE, CELL WAL WALL BIOGENESIS/DEGRADATION, LIGASE, NUCLEOTIDE-BINDING, PEPTIDOGLYCAN SYNTHESIS, UMA | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2Y68 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE | A | 435 | 3266 | 12 |
2 | Ligand | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE | A | 14 | 0 | 78 |
3 | Water | 449 | 0 | 449 | ||
total | 898 | 3266 | 539 |
Unit 1 | ALA1 ASP2 TYR3 GLN4 GLY5 LYS6 ASN7 VAL8 VAL9 ILE10 ILE11 GLY12 LEU13 GLY14 LEU15 THR16 GLY17 LEU18 SER19 CYS20 VAL21 ASP22 PHE23 PHE24 LEU25 ALA26 ARG27 GLY28 VAL29 THR30 PRO31 ARG32 VAL33 MET34 ASP35 THR36 ARG37 MET38 THR39 PRO40 PRO41 GLY42 LEU43 ASP44 LYS45 LEU46 PRO47 GLU48 ALA49 VAL50 GLU51 ARG52 HIS53 THR54 GLY55 SER56 LEU57 ASN58 ASP59 GLU60 TRP61 LEU62 MET63 ALA64 ALA65 ASP66 LEU67 ILE68 VAL69 ALA70 SER71 PRO72 GLY73 ILE74 ALA75 LEU76 ALA77 HIS78 PRO79 SER80 LEU81 SER82 ALA83 ALA84 ALA85 ASP86 ALA87 GLY88 ILE89 GLU90 ILE91 VAL92 GLY93 ASP94 ILE95 GLU96 LEU97 PHE98 CYS99 ARG100 GLU101 ALA102 GLN103 ALA104 PRO105 ILE106 VAL107 ALA108 ILE109 THR110 GLY111 SER112 ASN113 GLY114 LYS115 SER116 THR117 VAL118 THR119 THR120 LEU121 VAL122 GLY123 GLU124 MET125 ALA126 LYS127 ALA128 ALA129 GLY130 VAL131 ASN132 VAL133 GLY134 VAL135 GLY136 GLY137 ASN138 ILE139 GLY140 LEU141 PRO142 ALA143 LEU144 MET145 LEU146 LEU147 ASP148 ASP149 GLU150 CYS151 GLU152 LEU153 TYR154 VAL155 LEU156 GLU157 LEU158 SER159 SER160 PHE161 GLN162 LEU163 GLU164 THR165 THR166 SER167 SER168 LEU169 GLN170 ALA171 VAL172 ALA173 ALA174 THR175 ILE176 LEU177 ASN178 VAL179 THR180 GLU181 ASP182 HIS183 MET184 ASP185 ARG186 TYR187 PRO188 PHE189 GLY190 LEU191 GLN192 GLN193 TYR194 ARG195 ALA196 ALA197 KCX198 LEU199 ARG200 ILE201 TYR202 GLU203 ASN204 ALA205 LYS206 VAL207 CYS208 VAL209 VAL210 ASN211 ALA212 ASP213 ASP214 ALA215 LEU216 THR217 MET218 PRO219 ILE220 ARG221 ARG226 CYS227 VAL228 SER229 PHE230 GLY231 VAL232 ASN233 MET234 GLY235 ASP236 TYR237 HIS238 LEU239 ASN240 HIS241 GLN242 GLN243 GLY244 GLU245 THR246 TRP247 LEU248 ARG249 VAL250 LYS251 GLY252 GLU253 LYS254 VAL255 LEU256 ASN257 VAL258 LYS259 GLU260 MET261 LYS262 LEU263 SER264 GLY265 GLN266 HIS267 ASN268 TYR269 THR270 ASN271 ALA272 LEU273 ALA274 ALA275 LEU276 ALA277 LEU278 ALA279 ASP280 ALA281 ALA282 GLY283 LEU284 PRO285 ARG286 ALA287 SER288 SER289 LEU290 LYS291 ALA292 LEU293 THR294 THR295 PHE296 THR297 GLY298 LEU299 PRO300 HIS301 ARG302 PHE303 GLU304 VAL305 VAL306 LEU307 GLU308 HIS309 ASN310 GLY311 VAL312 ARG313 TRP314 ILE315 ASN316 ASP317 SER318 LYS319 ALA320 THR321 ASN322 VAL323 GLY324 SER325 THR326 GLU327 ALA328 ALA329 LEU330 ASN331 GLY332 LEU333 HIS334 VAL335 ASP336 GLY337 THR338 LEU339 HIS340 LEU341 LEU342 LEU343 GLY344 GLY345 ASP346 GLY347 LYS348 SER349 ALA350 ASP351 PHE352 SER353 PRO354 LEU355 ALA356 ARG357 TYR358 LEU359 ASN360 GLY361 ASP362 ASN363 VAL364 ARG365 LEU366 TYR367 CYS368 PHE369 GLY370 ARG371 ASP372 GLY373 ALA374 GLN375 LEU376 ALA377 ALA378 LEU379 ARG380 PRO381 GLU382 VAL383 ALA384 GLU385 GLN386 THR387 GLU388 THR389 MET390 GLU391 GLN392 ALA393 MET394 ARG395 LEU396 LEU397 ALA398 PRO399 ARG400 VAL401 GLN402 PRO403 GLY404 ASP405 MET406 VAL407 LEU408 LEU409 SER410 PRO411 ALA412 CYS413 ALA414 SER415 LEU416 ASP417 GLN418 PHE419 LYS420 ASN421 PHE422 GLU423 GLN424 ARG425 GLY426 ASN427 GLU428 PHE429 ALA430 ARG431 LEU432 ALA433 LYS434 GLU435 LEU436 GLY437 SER438 HIS439 |
Unit 2 | T04500 DMS601 DMS604 AZI700 AZI701 AZI703 AZI704 SO41440 SO41441 SO41442 SO41443 CL1444 CL1445 CL1505 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |