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| Title | CRYSTAL STRUCTURE OF XRN1-SUBSTRATE COMPLEX | |
| Keywords | HYDROLASE-DNA COMPLEX, RNA DEGRADATION, EXONUCLEASE 5'-3', R INTERFERENCE | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 2Y35 | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | LD22664P | A | 1026 | 8104 | 0 |
| 2 | Other macromolecule | DT11 (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP)-3' | B | 4 | 65 | 0 |
| 3 | Ligand | LD22664P | A | 1 | 0 | 1 |
| 4 | Water | 17 | 0 | 17 | ||
| total | 1048 | 8169 | 18 |
| Unit 1 | MET1 GLY2 VAL3 PRO4 LYS5 PHE6 PHE7 ARG8 TYR9 ILE10 SER11 GLU12 ARG13 TYR14 PRO15 CYS16 LEU17 SER18 GLU19 LEU20 ALA21 ARG22 GLU23 HIS24 CYS25 ILE26 PRO27 GLU28 PHE29 ASP30 ASN31 LEU32 TYR33 LEU34 ASP35 MET36 ASN37 GLY38 ILE39 VAL40 HIS41 ASN42 CYS43 SER44 HIS45 PRO46 PHE53 HIS54 LEU55 GLU56 GLU57 GLU58 GLN59 ILE60 PHE61 GLN62 GLU63 ILE64 PHE65 ASN66 TYR67 VAL68 ASP69 LYS70 LEU71 PHE72 TYR73 LEU74 ILE75 LYS76 PRO77 GLN78 ARG79 LEU80 PHE81 PHE82 LEU83 SER84 VAL85 ASP86 GLY87 VAL88 ALA89 PRO90 ARG91 ALA92 LYS93 MET94 ASN95 GLN96 GLN97 ARG98 SER99 ARG100 ARG101 PHE102 ARG103 THR104 ALA105 ARG106 GLU107 ALA108 GLU109 GLN110 GLN111 GLU112 ALA113 LYS114 ALA115 ALA116 GLN117 ARG118 ARG126 PHE127 ASP128 SER129 ASN130 CYS131 ILE132 THR133 PRO134 GLY135 THR136 GLU137 PHE138 MET139 VAL140 ARG141 LEU142 GLN143 GLU144 GLY145 LEU146 ARG147 ALA148 PHE149 LEU150 LYS151 THR152 LYS153 ILE154 SER155 THR156 ASP157 PRO158 LEU159 TRP160 GLN161 ARG162 CYS163 THR164 VAL165 ILE166 LEU167 SER168 GLY169 GLN170 GLU171 ALA172 PRO173 GLY174 GLU175 GLY176 GLU177 HIS178 LYS179 ILE180 MET181 ASP182 TYR183 ILE184 ARG185 TYR186 MET187 LYS188 THR189 GLN190 PRO191 ASP192 TYR193 ASP194 PRO195 ASN196 THR197 ARG198 HIS199 CYS200 LEU201 TYR202 GLY203 LEU204 ASP205 ALA206 ALA207 LEU208 ILE209 ILE210 LEU211 GLY212 LEU213 CYS214 THR215 HIS216 GLU217 LEU218 HIS219 PHE220 VAL221 VAL222 LEU223 ARG224 GLU225 GLU226 VAL227 LYS228 PHE229 GLY230 ARG231 ASN232 VAL233 LYS234 ARG235 THR236 SER237 VAL238 GLU239 GLU240 THR241 ARG242 PHE243 PHE244 LEU245 LEU246 HIS247 LEU248 GLY249 LEU250 LEU251 ARG252 GLU253 TYR254 LEU255 GLU256 LEU257 GLU258 PHE259 ASP260 ALA261 LEU262 ARG263 THR264 ASP265 GLU266 HIS267 LYS268 LEU269 ASP270 ILE271 ALA272 GLN273 LEU274 ILE275 ASP276 ASP277 TRP278 VAL279 LEU280 MET281 GLY282 PHE283 LEU284 VAL285 GLY286 ASN287 ASP288 PHE289 ILE290 PRO291 HIS292 LEU293 PRO294 CYS295 LEU296 HIS297 ILE298 SER299 SER300 ASN301 ALA302 LEU303 PRO304 LEU305 LEU306 TYR307 ARG308 THR309 TYR310 ILE311 GLY312 ILE313 TYR314 PRO315 THR316 LEU317 GLY318 GLY319 ASN320 ILE321 ASN322 GLU323 ASN324 GLY325 LYS326 LEU327 ASN328 LEU329 ARG330 ARG331 LEU332 GLN333 ILE334 PHE335 ILE336 SER337 ALA338 LEU339 THR340 GLU341 VAL342 GLU343 LEU344 ASP345 HIS346 PHE347 LYS348 GLU349 HIS350 ALA351 ASP352 ASP353 ASP402 GLU403 ASN404 ALA405 VAL406 LEU407 LEU408 LYS409 GLU410 PHE411 GLN412 ASN413 TYR414 LYS415 ARG416 ASN417 PHE418 TYR419 ARG420 ASN421 LYS422 PHE423 LYS424 ARG425 ASP426 PRO427 ASN428 ASP429 GLU430 LEU431 ILE432 GLU433 GLU434 LEU435 CYS436 HIS437 HIS438 TYR439 VAL440 ASN441 ALA442 LEU443 GLN444 TRP445 VAL446 LEU447 ASP448 TYR449 TYR450 TYR451 ARG452 GLY453 VAL454 GLN455 SER456 TRP457 ASP458 TRP459 TYR460 TYR461 PRO462 PHE463 HIS464 TYR465 THR466 PRO467 PHE468 ILE469 SER470 ASP471 LEU472 LYS473 ASN474 ILE475 GLU476 GLN477 VAL478 GLU479 ILE480 ALA481 PHE482 HIS483 MET484 GLY485 THR486 PRO487 PHE488 LEU489 PRO490 PHE491 GLN492 GLN493 LEU494 LEU495 ALA496 VAL497 LEU498 PRO499 ALA500 ALA501 SER502 ALA503 LYS504 LEU505 LEU506 PRO507 VAL508 ALA509 TYR510 HIS511 ASP512 LEU513 MET514 LEU515 LEU516 PRO517 THR518 SER519 PRO520 LEU521 ALA522 GLU523 PHE524 TYR525 PRO526 LEU527 GLU528 PHE529 GLU530 SER531 ASP532 LEU533 ASN534 GLY535 LYS536 LYS537 HIS538 ASP539 TRP540 GLU541 ALA542 VAL543 VAL544 LEU545 ILE546 PRO547 PHE548 ILE549 ASP550 GLU551 GLY552 ARG553 LEU554 LEU555 ALA556 ALA557 MET558 LEU559 PRO560 CYS561 GLU562 ALA563 GLN564 LEU565 SER566 LEU567 GLU568 GLU569 ARG570 GLU571 ARG572 ASN573 ARG574 HIS575 GLY576 PRO577 MET578 TYR579 VAL580 TYR581 LYS582 TYR583 SER584 THR585 VAL586 ALA587 GLN588 GLY589 PRO590 MET591 PRO592 ALA593 TYR594 PRO595 PRO596 LEU597 ARG598 ALA599 LEU600 PRO601 VAL602 LEU603 TYR604 CYS605 THR606 GLU607 VAL608 ALA609 LYS610 TRP611 SER612 HIS613 GLU614 ILE615 ALA616 VAL617 ASN618 LEU619 PRO620 TYR621 SER622 VAL623 CYS624 ILE625 GLU626 LEU627 PRO628 ASN629 ALA630 ALA631 ARG632 THR633 VAL634 PHE635 PHE636 PRO637 GLY638 PHE639 PRO640 THR641 MET642 GLN643 HIS644 LEU645 PRO646 PHE647 ASP648 PHE649 GLU650 LEU651 ARG652 ASN653 ASP654 ARG655 VAL656 LYS657 VAL658 PHE659 GLU660 GLN661 VAL662 SER663 ARG664 ASN665 GLN666 ASN667 ILE668 VAL669 LEU670 LYS671 PRO672 ARG673 LYS674 ARG675 GLN676 LEU677 GLU678 ASP679 THR680 LEU681 THR682 ALA683 VAL684 ALA685 SER686 GLN687 TYR688 LEU689 GLY690 LYS691 VAL692 ILE693 HIS694 VAL695 GLY696 TRP697 PRO698 HIS699 LEU700 VAL701 LYS702 ALA703 ILE704 VAL705 VAL706 ARG707 VAL708 ALA709 THR710 ARG711 ASP712 GLN713 ARG714 VAL715 ASP716 SER717 GLU718 GLY719 ILE720 THR721 LEU722 ASN723 ASP724 SER725 ARG726 ARG727 PHE728 ASP729 SER730 GLU731 CYS732 LYS733 ALA734 LEU735 GLN736 GLU737 HIS738 PHE739 ILE740 ASN741 ARG742 MET743 GLY744 ILE745 GLN746 PHE747 ALA748 ASN749 TYR750 ASP751 VAL752 LEU753 VAL754 TYR755 VAL756 ARG757 THR758 PHE759 ALA760 GLY761 ASN762 SER763 THR764 GLU765 PHE766 ARG767 ASP768 LYS769 GLY770 ALA771 LEU772 MET773 VAL774 ARG775 ASP776 SER777 TRP778 SER779 SER780 SER781 VAL782 THR783 GLY784 TYR785 PRO786 ALA787 GLN788 GLY789 VAL790 VAL791 ALA792 ASP793 LEU794 THR795 VAL796 TRP797 GLU798 ARG799 LYS802 ASN803 PHE804 LEU805 ASN806 VAL807 GLU808 HIS809 TYR810 PHE811 PRO812 VAL813 GLY814 SER815 THR816 ILE817 PHE818 LEU819 ILE820 THR821 ASP822 PRO823 TYR824 TYR825 GLY826 SER827 GLU828 GLY829 THR830 VAL831 GLN832 ASP833 PRO834 ARG835 ARG842 ILE843 GLN844 VAL845 SER846 ILE847 MET848 VAL849 ARG850 PRO851 GLU852 PRO853 LYS854 VAL855 ASN856 ALA857 ALA858 ARG859 GLN860 LEU861 GLN862 GLU863 GLU864 ARG865 ASP866 ARG867 ASP868 TYR869 LEU870 SER871 THR872 PHE873 GLN874 VAL875 CYS876 ASN877 LEU878 LEU879 ARG880 ILE881 SER882 GLY883 ARG884 THR885 LEU886 GLY887 ARG888 LEU889 SER890 GLY891 THR892 VAL893 TRP894 VAL895 VAL896 HIS910 ASN911 ILE912 GLY913 LEU914 GLN915 LEU916 LYS917 TYR918 PRO919 ARG920 GLN921 ASN922 GLU923 GLU924 ARG925 ALA926 GLY927 TYR928 CYS929 PHE930 ARG931 THR932 ASN933 ASN934 GLN935 TRP936 TYR937 TYR938 SER939 SER940 LEU941 ALA942 VAL943 ASP944 LEU945 MET946 ARG947 ASN948 TYR949 CYS950 GLN951 ARG952 TYR953 PRO954 ASP955 VAL956 ILE957 ASP958 PHE959 PHE960 GLY961 ASP962 SER963 ASN964 GLY981 HIS982 ARG983 ARG984 VAL985 GLU986 GLU987 LEU988 ALA989 ASN990 TRP991 VAL992 ARG993 GLN994 GLN995 PRO996 HIS997 MET998 LYS999 VAL1000 GLU1001 ARG1002 ILE1003 SER1004 CYS1005 GLY1006 SER1007 LYS1008 THR1009 VAL1010 CYS1011 ARG1012 GLU1013 THR1014 ILE1015 GLU1016 LEU1017 LEU1018 ILE1019 ALA1020 ALA1021 VAL1022 ASP1023 ASP1024 LEU1025 ARG1026 LYS1031 HIS1032 VAL1033 LYS1034 LEU1035 GLN1036 VAL1037 LYS1038 PRO1039 HIS1040 LEU1041 LEU1042 ILE1043 LYS1044 PRO1045 ASN1046 VAL1047 THR1048 LEU1049 PRO1050 ASP1051 VAL1052 TYR1053 ARG1054 SER1055 LYS1056 ARG1057 PRO1058 VAL1059 ARG1060 LEU1061 PHE1062 ASP1063 ARG1064 VAL1065 VAL1066 ILE1067 VAL1068 ARG1069 THR1070 ILE1071 TYR1072 MET1073 VAL1074 PRO1075 VAL1076 GLY1077 THR1078 LYS1079 GLY1080 THR1081 VAL1082 ILE1083 GLY1084 ILE1085 HIS1086 PRO1087 VAL1088 THR1089 ASP1090 PRO1091 ASN1092 PRO1093 VAL1094 ARG1095 LEU1096 GLU1097 CYS1098 VAL1099 HIS1100 ALA1101 VAL1102 ASP1103 THR1104 PHE1105 CYS1106 LYS1107 VAL1108 LEU1109 PHE1110 ASP1111 SER1112 PRO1113 VAL1114 ARG1127 VAL1128 TYR1129 LYS1130 VAL1131 PRO1132 GLU1133 ILE1134 ALA1135 LEU1136 VAL1137 ILE1138 ILE1139 LYS1140 |
| Unit 2 | DT1 DT2 DT3 DT4 |
| Unit 3 | MG2141 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |