2XZL - Sequence, Chains, Asymmetric and Biological Units

• Title: UPF1-RNA COMPLEX
• Keywords: HYDROLASE-RNA COMPLEX, NMD, RNA DEGRADATION, ALLOSTERIC REGU
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2XZL	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ATP-DEPENDENT HELICASE NAM7	A	756	5649	0
2	DNA/RNA		B	9	164	0
3	Ligand	ATP-DEPENDENT HELICASE NAM7	A	18	0	132
4	Water			96	0	96
total				879	5813	228

Proteins

Unit 1

ASN 60 SER 61 CYS 62 ALA 63 TYR 64 CYS 65 GLY 66 ILE 67 ASP 68 SER 69 ALA 70 LYS 71 CYS 72 VAL 73 ILE 74 LYS 75 CYS 76 ASN 77 SER 78 CYS 79 LYS 80 LYS 81 TRP 82 PHE 83 CYS 84 ASN 85 THR 86 LYS 87 ASN 88 GLY 89 THR 90 SER 91 SER 92 SER 93 HIS 94 ILE 95 VAL 96 ASN 97 HIS 98 LEU 99 VAL 100 LEU 101 SER 102 HIS 103 HIS 104 ASN 105 VAL 106 VAL 107 SER 108 LEU 109 HIS 110 PRO 111 ASP 112 SER 113 ASP 114 LEU 115 GLY 116 ASP 117 THR 118 VAL 119 LEU 120 GLU 121 CYS 122 TYR 123 ASN 124 CYS 125 GLY 126 ARG 127 LYS 128 ASN 129 VAL 130 PHE 131 LEU 132 LEU 133 GLY 134 PHE 135 VAL 136 SER 137 VAL 144 VAL 145 LEU 146 LEU 147 CYS 148 ARG 149 ILE 150 PRO 151 CYS 152 ALA 153 GLN 154 THR 155 LYS 156 TRP 160 ASP 161 THR 162 ASP 163 GLN 164 TRP 165 GLN 166 PRO 167 LEU 168 ILE 169 GLU 170 ASP 171 ARG 172 GLN 173 LEU 174 LEU 175 SER 176 TRP 177 VAL 178 ALA 179 GLU 180 GLN 181 PRO 182 THR 183 GLU 184 GLU 185 GLU 186 LYS 187 LEU 188 LYS 189 ALA 190 ARG 191 LEU 192 ILE 193 THR 194 PRO 195 SER 196 GLN 197 ILE 198 SER 199 LYS 200 LEU 201 GLU 202 ALA 203 LYS 204 TRP 205 ARG 206 SER 207 ASN 208 LYS 209 ASP 210 ALA 211 THR 212 ILE 225 PRO 226 PRO 227 LEU 228 LEU 229 LEU 230 ARG 231 TYR 232 GLN 233 ASP 234 ALA 235 TYR 236 GLU 237 TYR 238 GLN 239 ARG 240 SER 241 TYR 242 GLY 243 PRO 244 LEU 245 ILE 246 LYS 247 LEU 248 GLU 249 ALA 250 ASP 251 TYR 252 ASP 253 LYS 254 GLN 255 LEU 256 LYS 257 GLU 258 SER 259 GLN 260 GLU 263 HIS 264 ILE 265 SER 266 VAL 267 SER 268 TRP 269 SER 270 LEU 271 ALA 272 LEU 273 ASN 274 ASN 275 ARG 276 HIS 277 LEU 278 ALA 279 SER 280 PHE 281 THR 282 LYS 292 VAL 293 ALA 294 ILE 295 GLY 296 ASP 297 GLU 298 MET 299 ILE 300 LEU 301 TRP 302 TYR 303 SER 304 GLY 305 MET 306 GLN 307 HIS 308 PRO 309 ASP 310 TRP 311 GLU 312 GLY 313 ARG 314 GLY 315 TYR 316 ILE 317 VAL 318 ARG 319 LEU 320 PRO 321 ASN 322 ASP 326 THR 327 PHE 328 THR 329 LEU 330 GLU 331 LEU 332 LYS 333 PRO 334 SER 335 LYS 336 THR 337 PRO 338 PRO 339 PRO 340 THR 341 HIS 342 LEU 343 THR 344 THR 345 GLY 346 PHE 347 THR 348 ALA 349 GLU 350 PHE 351 ILE 352 TRP 353 LYS 354 GLY 355 THR 356 SER 357 TYR 358 ASP 359 ARG 360 MET 361 GLN 362 ASP 363 ALA 364 LEU 365 LYS 366 LYS 367 PHE 368 ALA 369 ILE 370 ASP 371 LYS 372 LYS 373 SER 374 ILE 375 SER 376 GLY 377 TYR 378 LEU 379 TYR 380 TYR 381 LYS 382 ILE 383 LEU 384 GLY 385 HIS 386 GLN 387 VAL 388 VAL 389 ASP 390 ILE 391 SER 392 PHE 393 ASP 394 VAL 395 PRO 396 LEU 397 PRO 398 LYS 399 GLU 400 PHE 401 SER 402 ILE 403 PRO 404 ASN 405 PHE 406 ALA 407 GLN 408 LEU 409 ASN 410 SER 411 SER 412 GLN 413 SER 414 ASN 415 ALA 416 VAL 417 SER 418 HIS 419 VAL 420 LEU 421 GLN 422 ARG 423 PRO 424 LEU 425 SER 426 LEU 427 ILE 428 GLN 429 GLY 430 PRO 431 PRO 432 GLY 433 THR 434 GLY 435 LYS 436 THR 437 VAL 438 THR 439 SER 440 ALA 441 THR 442 ILE 443 VAL 444 TYR 445 HIS 446 LEU 447 SER 448 LYS 449 ILE 450 HIS 451 LYS 452 ASP 453 ARG 454 ILE 455 LEU 456 VAL 457 CYS 458 ALA 459 PRO 460 SER 461 ASN 462 VAL 463 ALA 464 VAL 465 ASP 466 HIS 467 LEU 468 ALA 469 ALA 470 LYS 471 LEU 472 ARG 473 ASP 474 LEU 475 GLY 476 LEU 477 LYS 478 VAL 479 VAL 480 ARG 481 LEU 482 THR 483 ALA 484 LYS 485 SER 486 ARG 487 GLU 488 ASP 489 VAL 490 GLU 491 SER 492 SER 493 VAL 494 SER 495 ASN 496 LEU 497 ALA 498 LEU 499 HIS 500 ASN 501 LEU 502 VAL 503 GLY 504 ARG 505 GLY 506 ALA 507 LYS 508 GLY 509 GLU 510 LEU 511 LYS 512 ASN 513 LEU 514 LEU 515 LYS 516 LEU 517 LYS 518 ASP 519 GLU 520 VAL 521 GLY 522 GLU 523 LEU 524 SER 525 ALA 526 SER 527 ASP 528 THR 529 LYS 530 ARG 531 PHE 532 VAL 533 LYS 534 LEU 535 VAL 536 ARG 537 LYS 538 THR 539 GLU 540 ALA 541 GLU 542 ILE 543 LEU 544 ASN 545 LYS 546 ALA 547 ASP 548 VAL 549 VAL 550 CYS 551 CYS 552 THR 553 CYS 554 VAL 555 GLY 556 ALA 557 GLY 558 ASP 559 LYS 560 ARG 561 LEU 562 ASP 563 THR 564 LYS 565 PHE 566 ARG 567 THR 568 VAL 569 LEU 570 ILE 571 ASP 572 GLU 573 SER 574 THR 575 GLN 576 ALA 577 SER 578 GLU 579 PRO 580 GLU 581 CYS 582 LEU 583 ILE 584 PRO 585 ILE 586 VAL 587 LYS 588 GLY 589 ALA 590 LYS 591 GLN 592 VAL 593 ILE 594 LEU 595 VAL 596 GLY 597 ASP 598 HIS 599 GLN 600 GLN 601 LEU 602 GLY 603 PRO 604 VAL 605 ILE 606 LEU 607 GLU 608 ARG 609 LYS 610 ALA 611 ALA 612 ASP 613 ALA 614 GLY 615 LEU 616 LYS 617 GLN 618 SER 619 LEU 620 PHE 621 GLU 622 ARG 623 LEU 624 ILE 625 SER 626 LEU 627 GLY 628 HIS 629 VAL 630 PRO 631 ILE 632 ARG 633 LEU 634 GLU 635 VAL 636 GLN 637 TYR 638 ARG 639 MET 640 ASN 641 PRO 642 TYR 643 LEU 644 SER 645 GLU 646 PHE 647 PRO 648 SER 649 ASN 650 MET 651 PHE 652 TYR 653 GLU 654 GLY 655 SER 656 LEU 657 GLN 658 ASN 659 GLY 660 VAL 661 THR 662 ILE 663 GLU 664 GLN 665 ARG 666 THR 667 VAL 668 PRO 669 ASN 670 SER 671 LYS 672 PHE 673 PRO 674 TRP 675 PRO 676 ILE 677 ARG 678 GLY 679 ILE 680 PRO 681 MET 682 MET 683 PHE 684 TRP 685 ALA 686 ASN 687 TYR 688 GLY 689 ARG 690 GLU 691 GLU 692 ILE 693 SER 694 ALA 695 ASN 696 GLY 697 THR 698 SER 699 PHE 700 LEU 701 ASN 702 ARG 703 ILE 704 GLU 705 ALA 706 MET 707 ASN 708 CYS 709 GLU 710 ARG 711 ILE 712 ILE 713 THR 714 LYS 715 LEU 716 PHE 717 ARG 718 ASP 719 GLY 720 VAL 721 LYS 722 PRO 723 GLU 724 GLN 725 ILE 726 GLY 727 VAL 728 ILE 729 THR 730 PRO 731 TYR 732 GLU 733 GLY 734 GLN 735 ARG 736 ALA 737 TYR 738 ILE 739 LEU 740 GLN 741 TYR 742 MET 743 GLN 744 MET 745 ASN 746 GLY 747 SER 748 LEU 749 ASP 750 LYS 751 ASP 752 LEU 753 TYR 754 ILE 755 LYS 756 VAL 757 GLU 758 VAL 759 ALA 760 SER 761 VAL 762 ASP 763 ALA 764 PHE 765 GLN 766 GLY 767 ARG 768 GLU 769 LYS 770 ASP 771 TYR 772 ILE 773 ILE 774 LEU 775 SER 776 CYS 777 VAL 778 ARG 779 ALA 780 ASN 781 GLU 782 GLN 783 GLN 784 ALA 785 ILE 786 GLY 787 PHE 788 LEU 789 ARG 790 ASP 791 PRO 792 ARG 793 ARG 794 LEU 795 ASN 796 VAL 797 GLY 798 LEU 799 THR 800 ARG 801 ALA 802 LYS 803 TYR 804 GLY 805 LEU 806 VAL 807 ILE 808 LEU 809 GLY 810 ASN 811 PRO 812 ARG 813 SER 814 LEU 815 ALA 816 ARG 817 ASN 818 THR 819 LEU 820 TRP 821 ASN 822 HIS 823 LEU 824 LEU 825 ILE 826 HIS 827 PHE 828 ARG 829 GLU 830 LYS 831 GLY 832 CYS 833 LEU 834 VAL 835 GLU 836 GLY 837 THR 838 LEU 839 ASP 840 ASN 841 LEU 842 GLN 843 LEU 844 CYS 845 THR 846 VAL 847 GLN 848 LEU 849 VAL 850

Nucleic acids

Unit 2

U 1 U 2 U 3 U 4 U 5 U 6 U 7 U 8 U 9

Ligands

Unit 3

ZN 1851 ZN 1852 ZN 1853 ADP 1854 ALF 1855 MG 1856 1PE 1857 1PE 1858 1PE 1859 1PE 1860 1PE 1861 1PE 1862 1PE 1863 1PE 1864 1PE 1865 1PE 1866 1PE 1867 1PE 1868