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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURE OF ARCHAEAL CLASS II CPD PHOTOLYASE FROM METHANOSARCINA MAZEI IN COMPLEX WITH INTACT CPD-LESION
Keywords LYASE-DNA COMPLEX, PHOTOLYASE, DNA DAMAGE, DNA REPAIR, CLASS INTACT CPD-LESION, PROTEIN-DNA COMPLEX, WATER CLUSTER
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2XRZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DEOXYRIBODIPYRIMIDINE PHOTOLYASE  A 450 3631 0
2  Protein   DEOXYRIBODIPYRIMIDINE PHOTOLYASE  B 434 3494 0
3  Other macromolecule   CPD-COMPRISING OLIGONUCLEOTIDE  C 11 204 38
4  Other macromolecule   COUNTERSTRAND-OLIGONUCLEOTIDE  D 14 286 0
5  Other macromolecule   CPD-COMPRISING OLIGONUCLEOTIDE  E 10 185 38
6  Other macromolecule   COUNTERSTRAND-OLIGONUCLEOTIDE  F 13 266 0
7  Ligand   DEOXYRIBODIPYRIMIDINE PHOTOLYASE  A 9 0 92
8  Ligand   DEOXYRIBODIPYRIMIDINE PHOTOLYASE  B 3 0 61
9 Water     635 0 635
total       1579 8066 864
Proteins
Unit 1 HIS2 MET3 ASN4 PRO5 LYS6 ARG7 ILE8 ARG9 ALA10 LEU11 LYS12 SER13 GLY14 LYS15 GLN16 GLY17 ASP18 GLY19 PRO20 VAL21 VAL22 TYR23 TRP24 MET25 SER26 ARG27 ASP28 GLN29 ARG30 ALA31 GLU32 ASP33 ASN34 TRP35 ALA36 LEU37 LEU38 PHE39 SER40 ARG41 ALA42 ILE43 ALA44 LYS45 GLU46 ALA47 ASN48 VAL49 PRO50 VAL51 VAL52 VAL53 VAL54 PHE55 CYS56 LEU57 THR58 ASP59 GLU60 PHE61 LEU62 GLU63 ALA64 GLY65 ILE66 ARG67 GLN68 TYR69 GLU70 PHE71 MET72 LEU73 LYS74 GLY75 LEU76 GLN77 GLU78 LEU79 GLU80 VAL81 SER82 LEU83 SER84 ARG85 LYS86 LYS87 ILE88 PRO89 SER90 PHE91 PHE92 LEU93 ARG94 GLY95 ASP96 PRO97 GLY98 GLU99 LYS100 ILE101 SER102 ARG103 PHE104 VAL105 LYS106 ASP107 TYR108 ASN109 ALA110 GLY111 THR112 LEU113 VAL114 THR115 ASP116 PHE117 SER118 PRO119 LEU120 ARG121 ILE122 LYS123 ASN124 GLN125 TRP126 ILE127 GLU128 LYS129 VAL130 ILE131 SER132 GLY133 ILE134 SER135 ILE136 PRO137 PHE138 PHE139 GLU140 VAL141 ASP142 ALA143 HIS144 ASN145 VAL146 VAL147 PRO148 CYS149 TRP150 GLU151 ALA152 SER153 GLN154 LYS155 HIS156 GLU157 TYR158 ALA159 ALA160 HIS161 THR162 PHE163 ARG164 PRO165 LYS166 LEU167 TYR168 ALA169 LEU170 LEU171 PRO172 GLU173 PHE174 LEU175 GLU176 GLU177 PHE178 PRO179 GLU180 LEU181 GLU182 PRO183 ASN184 SER185 VAL186 GLU198 THR199 LEU200 SER201 ASP202 VAL203 LEU204 GLU205 THR206 GLY207 VAL208 LYS209 ALA210 LEU211 LEU212 PRO213 GLU214 ARG215 ALA216 LEU217 LEU218 LYS219 ASN220 LYS221 ASP222 PRO223 LEU224 PHE225 GLU226 PRO227 TRP228 HIS229 PHE230 GLU231 PRO232 GLY233 GLU234 LYS235 ALA236 ALA237 LYS238 LYS239 VAL240 MET241 GLU242 SER243 PHE244 ILE245 ALA246 ASP247 ARG248 LEU249 ASP250 SER251 TYR252 GLY253 ALA254 LEU255 ARG256 ASN257 ASP258 PRO259 THR260 LYS261 ASN262 MET263 LEU264 SER265 ASN266 LEU267 SER268 PRO269 TYR270 LEU271 HIS272 PHE273 GLY274 GLN275 ILE276 SER277 SER278 GLN279 ARG280 VAL281 VAL282 LEU283 GLU284 VAL285 GLU286 LYS287 ALA288 GLU289 SER290 ASN291 PRO292 GLY293 SER294 LYS295 LYS296 ALA297 PHE298 LEU299 ASP300 GLU301 ILE302 LEU303 ILE304 TRP305 LYS306 GLU307 ILE308 SER309 ASP310 ASN311 PHE312 CYS313 TYR314 TYR315 ASN316 PRO317 GLY318 TYR319 ASP320 GLY321 PHE322 GLU323 SER324 PHE325 PRO326 SER327 TRP328 ALA329 LYS330 GLU331 SER332 LEU333 ASN334 ALA335 HIS336 ARG337 ASN338 ASP339 VAL340 ARG341 SER342 HIS343 ILE344 TYR345 THR346 LEU347 GLU348 GLU349 PHE350 GLU351 ALA352 GLY353 LYS354 THR355 HIS356 ASP357 PRO358 LEU359 TRP360 ASN361 ALA362 SER363 GLN364 MET365 GLU366 LEU367 LEU368 SER369 THR370 GLY371 LYS372 MET373 HIS374 GLY375 TYR376 THR377 ARG378 MET379 TYR380 TRP381 ALA382 LYS383 LYS384 ILE385 LEU386 GLU387 TRP388 SER389 GLU390 SER391 PRO392 GLU393 LYS394 ALA395 LEU396 GLU397 ILE398 ALA399 ILE400 CYS401 LEU402 ASN403 ASP404 ARG405 TYR406 GLU407 LEU408 ASP409 GLY410 ARG411 ASP412 PRO413 ASN414 GLY415 TYR416 ALA417 GLY418 ILE419 ALA420 TRP421 SER422 ILE423 GLY424 GLY425 VAL426 HIS427 ASP428 ARG429 ALA430 TRP431 GLY432 GLU433 ARG434 GLU435 VAL436 THR437 GLY438 LYS439 ILE440 ARG441 TYR442 MET443 SER444 TYR445 GLU446 GLY447 CYS448 LYS449 ARG450 LYS451 PHE452 ASP453 VAL454 LYS455 LEU456 TYR457 ILE458 GLU459 LYS460 TYR461 SER462
Unit 2 LEU-4 VAL-3 PRO-2 ARG-1 GLY0 SER1 HIS2 MET3 ASN4 PRO5 LYS6 ARG7 ILE8 ARG9 ALA10 LEU11 LYS12 SER13 GLY14 LYS15 GLN16 GLY17 ASP18 GLY19 PRO20 VAL21 VAL22 TYR23 TRP24 MET25 SER26 ARG27 ASP28 GLN29 ARG30 ALA31 GLU32 ASP33 ASN34 TRP35 ALA36 LEU37 LEU38 PHE39 SER40 ARG41 ALA42 ILE43 ALA44 LYS45 GLU46 ALA47 ASN48 VAL49 PRO50 VAL51 VAL52 VAL53 VAL54 PHE55 CYS56 LEU57 THR58 ASP59 GLU60 PHE61 LEU62 GLU63 ALA64 GLY65 ILE66 ARG67 GLN68 TYR69 GLU70 PHE71 MET72 LEU73 LYS74 GLY75 LEU76 GLN77 GLU78 LEU79 GLU80 VAL81 SER82 LEU83 SER84 ARG85 LYS86 LYS87 ILE88 PRO89 SER90 PHE91 PHE92 LEU93 ARG94 GLY95 ASP96 PRO97 GLY98 GLU99 LYS100 ILE101 SER102 ARG103 PHE104 VAL105 LYS106 ASP107 TYR108 ASN109 ALA110 GLY111 THR112 LEU113 VAL114 THR115 ASP116 PHE117 SER118 PRO119 LEU120 ARG121 ILE122 LYS123 ASN124 GLN125 TRP126 ILE127 GLU128 LYS129 VAL130 ILE131 SER132 GLY133 ILE134 SER135 ILE136 PRO137 PHE138 PHE139 GLU140 VAL141 ASP142 ALA143 HIS144 ASN145 VAL146 VAL147 PRO148 CYS149 TRP150 GLU151 ALA152 SER153 GLN154 LYS155 HIS156 GLU157 TYR158 ALA159 ALA160 HIS161 THR162 PHE163 ARG164 PRO165 LYS166 LEU167 TYR168 ALA169 LEU170 LEU171 PRO172 GLU173 PHE174 LEU175 GLU176 GLU177 PHE178 PRO179 GLU180 LEU181 GLU182 PRO183 ASN184 SER185 VAL186 THR187 LYS221 ASP222 PRO223 LEU224 PHE225 GLU226 PRO227 TRP228 HIS229 PHE230 GLU231 PRO232 GLY233 GLU234 LYS235 ALA236 ALA237 LYS238 LYS239 VAL240 MET241 GLU242 SER243 PHE244 ILE245 ALA246 ASP247 ARG248 LEU249 ASP250 SER251 TYR252 GLY253 ALA254 LEU255 ARG256 ASN257 ASP258 PRO259 THR260 LYS261 ASN262 MET263 LEU264 SER265 ASN266 LEU267 SER268 PRO269 TYR270 LEU271 HIS272 PHE273 GLY274 GLN275 ILE276 SER277 SER278 GLN279 ARG280 VAL281 VAL282 LEU283 GLU284 VAL285 GLU286 LYS287 ALA288 GLU289 SER290 ASN291 PRO292 GLY293 SER294 LYS295 LYS296 ALA297 PHE298 LEU299 ASP300 GLU301 ILE302 LEU303 ILE304 TRP305 LYS306 GLU307 ILE308 SER309 ASP310 ASN311 PHE312 CYS313 TYR314 TYR315 ASN316 PRO317 GLY318 TYR319 ASP320 GLY321 PHE322 GLU323 SER324 PHE325 PRO326 SER327 TRP328 ALA329 LYS330 GLU331 SER332 LEU333 ASN334 ALA335 HIS336 ARG337 ASN338 ASP339 VAL340 ARG341 SER342 HIS343 ILE344 TYR345 THR346 LEU347 GLU348 GLU349 PHE350 GLU351 ALA352 GLY353 LYS354 THR355 HIS356 ASP357 PRO358 LEU359 TRP360 ASN361 ALA362 SER363 GLN364 MET365 GLU366 LEU367 LEU368 SER369 THR370 GLY371 LYS372 MET373 HIS374 GLY375 TYR376 THR377 ARG378 MET379 TYR380 TRP381 ALA382 LYS383 LYS384 ILE385 LEU386 GLU387 TRP388 SER389 GLU390 SER391 PRO392 GLU393 LYS394 ALA395 LEU396 GLU397 ILE398 ALA399 ILE400 CYS401 LEU402 ASN403 ASP404 ARG405 TYR406 GLU407 LEU408 ASP409 GLY410 ARG411 ASP412 PRO413 ASN414 GLY415 TYR416 ALA417 GLY418 ILE419 ALA420 TRP421 SER422 ILE423 GLY424 GLY425 VAL426 HIS427 ASP428 ARG429 ALA430 TRP431 GLY432 GLU433 ARG434 GLU435 VAL436 THR437 GLY438 LYS439 ILE440 ARG441 TYR442 MET443 SER444 TYR445 GLU446 GLY447 CYS448 LYS449 ARG450 LYS451 PHE452 ASP453 VAL454 LYS455 LEU456 TYR457 ILE458 GLU459 LYS460 TYR461 SER462
Other macromolecules
Unit 3 DC3 DG4 DG5 DC6 TT7 DC9 DG10 DC11 DG12 DC13 DA14
Unit 4 DT1 DG2 DC3 DG4 DC5 DG6 DA7 DA8 DG9 DC10 DC11 DG12 DA13 DT14
Unit 5 DG4 DG5 DC6 TT7 DC9 DG10 DC11 DG12 DC13 DA14
Unit 6 DT1 DG2 DC3 DG4 DC5 DG6 DA7 DA8 DG9 DC10 DC11 DG12 DA13
Ligands
Unit 7 FAD998 SO41463 GOL1464 GOL1465 GOL1466 ACT1467 ACT1468 ACT1469 ACT1470
Unit 8 FAD998 ACT1463 ACT1464
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany