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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE AND FUNCTION OF THE RAD9-BINDING REGION OF THE DNA CHECKPOINT ADAPTOR TOPBP1
Keywords ISOMERASE, PHOSPHORYLATION, PROTEIN-PROTEIN INTERACTION, DNA
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2XNK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA TOPOISOMERASE 2-BINDING PROTEIN 1  A 291 2288 72
2  Protein   DNA TOPOISOMERASE 2-BINDING PROTEIN 1  B 290 2282 72
3  Protein   DNA TOPOISOMERASE 2-BINDING PROTEIN 1  C 289 2278 72
4  Protein   DNA TOPOISOMERASE 2-BINDING PROTEIN 1  D 290 2282 72
5  Ligand   DNA TOPOISOMERASE 2-BINDING PROTEIN 1  A 2 0 12
6  Ligand   DNA TOPOISOMERASE 2-BINDING PROTEIN 1  B 3 0 18
7  Ligand   DNA TOPOISOMERASE 2-BINDING PROTEIN 1  C 3 0 18
8  Ligand   DNA TOPOISOMERASE 2-BINDING PROTEIN 1  D 3 0 18
9 Water     340 0 340
total       1511 9130 694
Proteins
Unit 1 GLY-1 PRO0 MSE1 SER2 ARG3 ASN4 ASP5 LYS6 GLU7 PRO8 PHE9 PHE10 VAL11 LYS12 PHE13 LEU14 LYS15 SER16 SER17 ASP18 ASN19 SER20 LYS21 CYS22 PHE23 PHE24 LYS25 ALA26 LEU27 GLU28 SER29 ILE30 LYS31 GLU32 PHE33 GLN34 SER35 GLU36 GLU37 TYR38 LEU39 GLN40 ILE41 ILE42 THR43 GLU44 GLU45 GLU46 ALA47 LEU48 LYS49 ILE50 LYS51 GLU52 ASN53 ASP54 ARG55 SER56 LEU57 TYR58 ILE59 CYS60 ASP61 PRO62 PHE63 SER64 GLY65 VAL66 VAL67 PHE68 ASP69 HIS70 LEU71 LYS72 LYS73 LEU74 GLY75 CYS76 ARG77 ILE78 VAL79 GLY80 PRO81 GLN82 VAL83 VAL84 ILE85 PHE86 CYS87 MSE88 HIS89 HIS90 GLN91 ARG92 CYS93 VAL94 PRO95 ARG96 ALA97 GLU98 HIS99 PRO100 VAL101 TYR102 ASN103 MSE104 VAL105 MSE106 SER107 ASP108 VAL109 THR110 ILE111 SER112 CYS113 THR114 SER115 LEU116 GLU117 LYS118 GLU119 LYS120 ARG121 GLU122 GLU123 VAL124 HIS125 LYS126 TYR127 VAL128 GLN129 MSE130 MSE131 GLY132 GLY133 ARG134 VAL135 TYR136 ARG137 ASP138 LEU139 ASN140 VAL141 SER142 VAL143 THR144 HIS145 LEU146 ILE147 ALA148 GLY149 GLU150 VAL151 GLY152 SER153 LYS154 LYS155 TYR156 LEU157 VAL158 ALA159 ALA160 ASN161 LEU162 LYS163 LYS164 PRO165 ILE166 LEU167 LEU168 PRO169 SER170 TRP171 ILE172 LYS173 THR174 LEU175 TRP176 GLU177 LYS178 SER179 GLN180 GLU181 LYS182 LYS183 ILE184 THR185 ARG186 TYR187 THR188 ASP189 ILE190 ASN191 MSE192 GLU193 ASP194 PHE195 LYS196 CYS197 PRO198 ILE199 PHE200 LEU201 GLY202 CYS203 ILE204 ILE205 CYS206 VAL207 THR208 GLY209 LEU210 CYS211 GLY212 LEU213 ASP214 ARG215 LYS216 GLU217 VAL218 GLN219 GLN220 LEU221 THR222 VAL223 LYS224 HIS225 GLY226 GLY227 GLN228 TYR229 MSE230 GLY231 GLN232 LEU233 LYS234 MSE235 ASN236 GLU237 CYS238 THR239 HIS240 LEU241 ILE242 VAL243 GLN244 GLU245 PRO246 LYS247 GLY248 GLN249 LYS250 TYR251 GLU252 CYS253 ALA254 LYS255 ARG256 TRP257 ASN258 VAL259 HIS260 CYS261 VAL262 THR263 THR264 GLN265 TRP266 PHE267 PHE268 ASP269 SER270 ILE271 GLU272 LYS273 GLY274 PHE275 CYS276 GLN277 ASP278 GLU279 SER280 ILE281 TYR282 LYS283 THR284 GLU285 PRO286 ARG287 PRO288 GLU289
Unit 2 GLY-1 PRO0 MSE1 SER2 ARG3 ASN4 ASP5 LYS6 GLU7 PRO8 PHE9 PHE10 VAL11 LYS12 PHE13 LEU14 LYS15 SER16 SER17 ASP18 ASN19 SER20 LYS21 CYS22 PHE23 PHE24 LYS25 ALA26 LEU27 GLU28 SER29 ILE30 LYS31 GLU32 PHE33 GLN34 SER35 GLU36 GLU37 TYR38 LEU39 GLN40 ILE41 ILE42 THR43 GLU44 GLU45 GLU46 ALA47 LEU48 LYS49 ILE50 LYS51 GLU52 ASN53 ASP54 ARG55 SER56 LEU57 TYR58 ILE59 CYS60 ASP61 PRO62 PHE63 SER64 GLY65 VAL66 VAL67 PHE68 ASP69 HIS70 LEU71 LYS72 LYS73 LEU74 GLY75 CYS76 ARG77 ILE78 VAL79 GLY80 PRO81 GLN82 VAL83 VAL84 ILE85 PHE86 CYS87 MSE88 HIS89 HIS90 GLN91 ARG92 CYS93 VAL94 PRO95 ARG96 ALA97 GLU98 HIS99 PRO100 VAL101 TYR102 ASN103 MSE104 VAL105 MSE106 SER107 ASP108 VAL109 THR110 ILE111 SER112 CYS113 THR114 SER115 LEU116 GLU117 LYS118 GLU119 LYS120 ARG121 GLU122 GLU123 VAL124 HIS125 LYS126 TYR127 VAL128 GLN129 MSE130 MSE131 GLY132 GLY133 ARG134 VAL135 TYR136 ARG137 ASP138 LEU139 ASN140 VAL141 SER142 VAL143 THR144 HIS145 LEU146 ILE147 ALA148 GLY149 GLU150 VAL151 GLY152 SER153 LYS154 LYS155 TYR156 LEU157 VAL158 ALA159 ALA160 ASN161 LEU162 LYS163 LYS164 PRO165 ILE166 LEU167 LEU168 PRO169 SER170 TRP171 ILE172 LYS173 THR174 LEU175 TRP176 GLU177 LYS178 SER179 GLN180 GLU181 LYS182 LYS183 ILE184 THR185 ARG186 TYR187 THR188 ASP189 ILE190 ASN191 MSE192 GLU193 ASP194 PHE195 LYS196 CYS197 PRO198 ILE199 PHE200 LEU201 GLY202 CYS203 ILE204 ILE205 CYS206 VAL207 THR208 GLY209 LEU210 CYS211 GLY212 LEU213 ASP214 ARG215 LYS216 GLU217 VAL218 GLN219 GLN220 LEU221 THR222 VAL223 LYS224 HIS225 GLY226 GLY227 GLN228 TYR229 MSE230 GLY231 GLN232 LEU233 LYS234 MSE235 ASN236 GLU237 CYS238 THR239 HIS240 LEU241 ILE242 VAL243 GLN244 GLU245 PRO246 LYS247 GLY248 GLN249 LYS250 TYR251 GLU252 CYS253 ALA254 LYS255 ARG256 TRP257 ASN258 VAL259 HIS260 CYS261 VAL262 THR263 THR264 GLN265 TRP266 PHE267 PHE268 ASP269 SER270 ILE271 GLU272 LYS273 GLY274 PHE275 CYS276 GLN277 ASP278 GLU279 SER280 ILE281 TYR282 LYS283 THR284 GLU285 PRO286 ARG287 PRO288
Unit 3 PRO0 MSE1 SER2 ARG3 ASN4 ASP5 LYS6 GLU7 PRO8 PHE9 PHE10 VAL11 LYS12 PHE13 LEU14 LYS15 SER16 SER17 ASP18 ASN19 SER20 LYS21 CYS22 PHE23 PHE24 LYS25 ALA26 LEU27 GLU28 SER29 ILE30 LYS31 GLU32 PHE33 GLN34 SER35 GLU36 GLU37 TYR38 LEU39 GLN40 ILE41 ILE42 THR43 GLU44 GLU45 GLU46 ALA47 LEU48 LYS49 ILE50 LYS51 GLU52 ASN53 ASP54 ARG55 SER56 LEU57 TYR58 ILE59 CYS60 ASP61 PRO62 PHE63 SER64 GLY65 VAL66 VAL67 PHE68 ASP69 HIS70 LEU71 LYS72 LYS73 LEU74 GLY75 CYS76 ARG77 ILE78 VAL79 GLY80 PRO81 GLN82 VAL83 VAL84 ILE85 PHE86 CYS87 MSE88 HIS89 HIS90 GLN91 ARG92 CYS93 VAL94 PRO95 ARG96 ALA97 GLU98 HIS99 PRO100 VAL101 TYR102 ASN103 MSE104 VAL105 MSE106 SER107 ASP108 VAL109 THR110 ILE111 SER112 CYS113 THR114 SER115 LEU116 GLU117 LYS118 GLU119 LYS120 ARG121 GLU122 GLU123 VAL124 HIS125 LYS126 TYR127 VAL128 GLN129 MSE130 MSE131 GLY132 GLY133 ARG134 VAL135 TYR136 ARG137 ASP138 LEU139 ASN140 VAL141 SER142 VAL143 THR144 HIS145 LEU146 ILE147 ALA148 GLY149 GLU150 VAL151 GLY152 SER153 LYS154 LYS155 TYR156 LEU157 VAL158 ALA159 ALA160 ASN161 LEU162 LYS163 LYS164 PRO165 ILE166 LEU167 LEU168 PRO169 SER170 TRP171 ILE172 LYS173 THR174 LEU175 TRP176 GLU177 LYS178 SER179 GLN180 GLU181 LYS182 LYS183 ILE184 THR185 ARG186 TYR187 THR188 ASP189 ILE190 ASN191 MSE192 GLU193 ASP194 PHE195 LYS196 CYS197 PRO198 ILE199 PHE200 LEU201 GLY202 CYS203 ILE204 ILE205 CYS206 VAL207 THR208 GLY209 LEU210 CYS211 GLY212 LEU213 ASP214 ARG215 LYS216 GLU217 VAL218 GLN219 GLN220 LEU221 THR222 VAL223 LYS224 HIS225 GLY226 GLY227 GLN228 TYR229 MSE230 GLY231 GLN232 LEU233 LYS234 MSE235 ASN236 GLU237 CYS238 THR239 HIS240 LEU241 ILE242 VAL243 GLN244 GLU245 PRO246 LYS247 GLY248 GLN249 LYS250 TYR251 GLU252 CYS253 ALA254 LYS255 ARG256 TRP257 ASN258 VAL259 HIS260 CYS261 VAL262 THR263 THR264 GLN265 TRP266 PHE267 PHE268 ASP269 SER270 ILE271 GLU272 LYS273 GLY274 PHE275 CYS276 GLN277 ASP278 GLU279 SER280 ILE281 TYR282 LYS283 THR284 GLU285 PRO286 ARG287 PRO288
Unit 4 GLY-1 PRO0 MSE1 SER2 ARG3 ASN4 ASP5 LYS6 GLU7 PRO8 PHE9 PHE10 VAL11 LYS12 PHE13 LEU14 LYS15 SER16 SER17 ASP18 ASN19 SER20 LYS21 CYS22 PHE23 PHE24 LYS25 ALA26 LEU27 GLU28 SER29 ILE30 LYS31 GLU32 PHE33 GLN34 SER35 GLU36 GLU37 TYR38 LEU39 GLN40 ILE41 ILE42 THR43 GLU44 GLU45 GLU46 ALA47 LEU48 LYS49 ILE50 LYS51 GLU52 ASN53 ASP54 ARG55 SER56 LEU57 TYR58 ILE59 CYS60 ASP61 PRO62 PHE63 SER64 GLY65 VAL66 VAL67 PHE68 ASP69 HIS70 LEU71 LYS72 LYS73 LEU74 GLY75 CYS76 ARG77 ILE78 VAL79 GLY80 PRO81 GLN82 VAL83 VAL84 ILE85 PHE86 CYS87 MSE88 HIS89 HIS90 GLN91 ARG92 CYS93 VAL94 PRO95 ARG96 ALA97 GLU98 HIS99 PRO100 VAL101 TYR102 ASN103 MSE104 VAL105 MSE106 SER107 ASP108 VAL109 THR110 ILE111 SER112 CYS113 THR114 SER115 LEU116 GLU117 LYS118 GLU119 LYS120 ARG121 GLU122 GLU123 VAL124 HIS125 LYS126 TYR127 VAL128 GLN129 MSE130 MSE131 GLY132 GLY133 ARG134 VAL135 TYR136 ARG137 ASP138 LEU139 ASN140 VAL141 SER142 VAL143 THR144 HIS145 LEU146 ILE147 ALA148 GLY149 GLU150 VAL151 GLY152 SER153 LYS154 LYS155 TYR156 LEU157 VAL158 ALA159 ALA160 ASN161 LEU162 LYS163 LYS164 PRO165 ILE166 LEU167 LEU168 PRO169 SER170 TRP171 ILE172 LYS173 THR174 LEU175 TRP176 GLU177 LYS178 SER179 GLN180 GLU181 LYS182 LYS183 ILE184 THR185 ARG186 TYR187 THR188 ASP189 ILE190 ASN191 MSE192 GLU193 ASP194 PHE195 LYS196 CYS197 PRO198 ILE199 PHE200 LEU201 GLY202 CYS203 ILE204 ILE205 CYS206 VAL207 THR208 GLY209 LEU210 CYS211 GLY212 LEU213 ASP214 ARG215 LYS216 GLU217 VAL218 GLN219 GLN220 LEU221 THR222 VAL223 LYS224 HIS225 GLY226 GLY227 GLN228 TYR229 MSE230 GLY231 GLN232 LEU233 LYS234 MSE235 ASN236 GLU237 CYS238 THR239 HIS240 LEU241 ILE242 VAL243 GLN244 GLU245 PRO246 LYS247 GLY248 GLN249 LYS250 TYR251 GLU252 CYS253 ALA254 LYS255 ARG256 TRP257 ASN258 VAL259 HIS260 CYS261 VAL262 THR263 THR264 GLN265 TRP266 PHE267 PHE268 ASP269 SER270 ILE271 GLU272 LYS273 GLY274 PHE275 CYS276 GLN277 ASP278 GLU279 SER280 ILE281 TYR282 LYS283 THR284 GLU285 PRO286 ARG287 PRO288
Ligands
Unit 5 GOL1290 GOL1291
Unit 6 GOL1289 GOL1290 GOL1291
Unit 7 GOL1289 GOL1290 GOL1291
Unit 8 GOL1289 GOL1290 GOL1291
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany