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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE LMO2:LDB1-LID COMPLEX, C2 CRYSTAL F
Keywords ONCOPROTEIN, T-CELL LEUKEMIA, PROTO-ONCOGENE, TRANSCRIPTION, DEVELOPMENTAL PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2XJZ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RHOMBOTIN-2  A 125 1029 0
2  Protein   RHOMBOTIN-2  B 122 1011 0
3  Protein   RHOMBOTIN-2  C 112 920 0
4  Protein   RHOMBOTIN-2  D 129 1056 0
5  Protein   RHOMBOTIN-2  E 127 1039 0
6  Protein   LIM DOMAIN-BINDING PROTEIN 1  I 29 223 0
7  Protein   LIM DOMAIN-BINDING PROTEIN 1  J 31 230 0
8  Protein   LIM DOMAIN-BINDING PROTEIN 1  K 21 157 0
9  Protein   LIM DOMAIN-BINDING PROTEIN 1  L 29 223 0
10  Protein   LIM DOMAIN-BINDING PROTEIN 1  M 26 199 0
11  Ligand   RHOMBOTIN-2  A 4 0 4
12  Ligand   RHOMBOTIN-2  B 5 0 5
13  Ligand   RHOMBOTIN-2  C 4 0 4
14  Ligand   RHOMBOTIN-2  D 5 0 5
15  Ligand   RHOMBOTIN-2  E 4 0 4
16 Water     55 0 57
total       828 6087 79

Proteins
Unit 1 GLY25 CYS26 GLN27 GLN28 ASN29 ILE30 GLY31 ASP32 ARG33 TYR34 PHE35 LEU36 LYS37 ALA38 ILE39 ASP40 GLN41 TYR42 TRP43 HIS44 GLU45 ASP46 CYS47 LEU48 SER49 CYS50 ASP51 LEU52 CYS53 GLY54 CYS55 ARG56 LEU57 GLY58 GLU59 VAL60 GLY61 ARG62 ARG63 LEU64 TYR65 TYR66 LYS67 LEU68 GLY69 ARG70 LYS71 LEU72 CYS73 ARG74 ARG75 ASP76 TYR77 LEU78 ARG79 LEU80 PHE81 GLY82 GLN83 ASP84 GLY85 LEU86 CYS87 ALA88 SER89 CYS90 ASP91 LYS92 ARG93 ILE94 ARG95 ALA96 TYR97 GLU98 MET99 THR100 MET101 ARG102 VAL103 LYS104 ASP105 LYS106 VAL107 TYR108 HIS109 LEU110 GLU111 CYS112 PHE113 LYS114 CYS115 ALA116 ALA117 CYS118 GLN119 LYS120 HIS121 PHE122 CYS123 VAL124 GLY125 ASP126 ARG127 TYR128 LEU129 LEU130 ILE131 ASN132 SER133 ASP134 ILE135 VAL136 CYS137 GLU138 GLN139 ASP140 ILE141 TYR142 GLU143 TRP144 THR145 LYS146 ILE147 ASN148 GLY149
Unit 2 CYS23 GLY24 GLY25 CYS26 GLN27 GLN28 ASN29 ILE30 GLY31 ASP32 ARG33 TYR34 PHE35 LEU36 LYS37 ALA38 ILE39 ASP40 GLN41 TYR42 TRP43 HIS44 GLU45 ASP46 CYS47 LEU48 SER49 CYS50 ASP51 LEU52 CYS53 GLY54 CYS55 ARG56 LEU57 ARG62 ARG63 LEU64 TYR65 TYR66 LYS67 LEU68 GLY69 ARG70 LYS71 LEU72 CYS73 ARG74 ARG75 ASP76 TYR77 LEU78 ARG79 LEU80 PHE81 GLY82 GLN83 ASP84 GLY85 LEU86 CYS87 ALA88 SER89 CYS90 ASP91 LYS92 ARG93 ILE94 ARG95 ALA96 TYR97 GLU98 MET99 THR100 MET101 ARG102 VAL103 LYS104 ASP105 LYS106 VAL107 TYR108 HIS109 LEU110 GLU111 CYS112 PHE113 LYS114 CYS115 ALA116 ALA117 CYS118 GLN119 LYS120 HIS121 PHE122 CYS123 VAL124 GLY125 ASP126 ARG127 TYR128 LEU129 LEU130 ILE131 ASN132 SER133 ASP134 ILE135 VAL136 CYS137 GLU138 GLN139 ASP140 ILE141 TYR142 GLU143 TRP144 THR145 LYS146 ILE147 ASN148
Unit 3 GLY24 GLY25 CYS26 GLN27 GLN41 TYR42 TRP43 HIS44 GLU45 ASP46 CYS47 LEU48 SER49 CYS50 ASP51 LEU52 CYS53 GLY54 CYS55 ARG56 LEU57 GLY58 GLU59 VAL60 GLY61 ARG62 ARG63 LEU64 TYR65 TYR66 LYS67 LEU68 GLY69 ARG70 LYS71 LEU72 CYS73 ARG74 ARG75 ASP76 TYR77 LEU78 ARG79 LEU80 PHE81 GLY82 GLN83 ASP84 GLY85 LEU86 CYS87 ALA88 SER89 CYS90 ASP91 LYS92 ARG93 ILE94 ARG95 ALA96 TYR97 GLU98 MET99 THR100 MET101 ARG102 VAL103 LYS104 ASP105 LYS106 VAL107 TYR108 HIS109 LEU110 GLU111 CYS112 PHE113 LYS114 CYS115 ALA116 ALA117 CYS118 GLN119 LYS120 HIS121 PHE122 CYS123 VAL124 GLY125 ASP126 ARG127 TYR128 LEU129 LEU130 ILE131 ASN132 SER133 ASP134 ILE135 VAL136 CYS137 GLU138 GLN139 ASP140 ILE141 TYR142 GLU143 TRP144 THR145 LYS146 ILE147 ASN148
Unit 4 SER19 LEU20 LEU21 THR22 CYS23 GLY24 GLY25 CYS26 GLN27 GLN28 ASN29 ILE30 GLY31 ASP32 ARG33 TYR34 PHE35 LEU36 LYS37 ALA38 ILE39 ASP40 GLN41 TYR42 TRP43 HIS44 GLU45 ASP46 CYS47 LEU48 SER49 CYS50 ASP51 LEU52 CYS53 GLY54 CYS55 ARG56 LEU57 GLY58 GLU59 VAL60 GLY61 ARG62 ARG63 LEU64 TYR65 TYR66 LYS67 LEU68 GLY69 ARG70 LYS71 LEU72 CYS73 ARG74 ARG75 ASP76 TYR77 LEU78 ARG79 LEU80 PHE81 GLY82 GLN83 ASP84 GLY85 LEU86 CYS87 ALA88 SER89 CYS90 ASP91 LYS92 ARG93 ILE94 ARG95 ALA96 TYR97 GLU98 MET99 THR100 MET101 ARG102 VAL103 LYS104 ASP105 LYS106 VAL107 TYR108 HIS109 LEU110 GLU111 CYS112 PHE113 LYS114 CYS115 ALA116 ALA117 CYS118 GLN119 LYS120 HIS121 PHE122 CYS123 VAL124 GLY125 ASP126 ARG127 TYR128 LEU129 LEU130 ILE131 ASN132 SER133 ASP134 ILE135 VAL136 CYS137 GLU138 GLN139 ASP140 ILE141 TYR142 GLU143 TRP144 THR145 LYS146 ILE147
Unit 5 CYS23 GLY24 GLY25 CYS26 GLN27 GLN28 ASN29 ILE30 GLY31 ASP32 ARG33 TYR34 PHE35 LEU36 LYS37 ALA38 ILE39 ASP40 GLN41 TYR42 TRP43 HIS44 GLU45 ASP46 CYS47 LEU48 SER49 CYS50 ASP51 LEU52 CYS53 GLY54 CYS55 ARG56 LEU57 GLY58 GLU59 VAL60 GLY61 ARG62 ARG63 LEU64 TYR65 TYR66 LYS67 LEU68 GLY69 ARG70 LYS71 LEU72 CYS73 ARG74 ARG75 ASP76 TYR77 LEU78 ARG79 LEU80 PHE81 GLY82 GLN83 ASP84 GLY85 LEU86 CYS87 ALA88 SER89 CYS90 ASP91 LYS92 ARG93 ILE94 ARG95 ALA96 TYR97 GLU98 MET99 THR100 MET101 ARG102 VAL103 LYS104 ASP105 LYS106 VAL107 TYR108 HIS109 LEU110 GLU111 CYS112 PHE113 LYS114 CYS115 ALA116 ALA117 CYS118 GLN119 LYS120 HIS121 PHE122 CYS123 VAL124 GLY125 ASP126 ARG127 TYR128 LEU129 LEU130 ILE131 ASN132 SER133 ASP134 ILE135 VAL136 CYS137 GLU138 GLN139 ASP140 ILE141 TYR142 GLU143 TRP144 THR145 LYS146 ILE147 ASN148 GLY149
Unit 6 ASP336 VAL337 MET338 VAL339 VAL340 GLY341 GLU342 PRO343 THR344 LEU345 MET346 GLY347 GLY348 GLU349 PHE350 GLY351 ASP352 GLU353 ASP354 GLU355 ARG356 LEU357 ILE358 THR359 ARG360 LEU361 GLU362 ASN363 THR364
Unit 7 SER333 VAL334 PRO335 ASP336 VAL337 MET338 VAL339 VAL340 GLY341 GLU342 PRO343 THR344 LEU345 MET346 GLY347 GLY348 GLU349 PHE350 GLY351 ASP352 GLU353 ASP354 GLU355 ARG356 LEU357 ILE358 THR359 ARG360 LEU361 GLU362 ASN363
Unit 8 ASP336 VAL337 MET338 VAL339 VAL340 GLY341 GLU342 PRO343 THR344 LEU345 MET346 GLY347 GLY348 GLU349 PHE350 GLY351 ASP352 GLU353 ASP354 GLU355 ARG356
Unit 9 ASP336 VAL337 MET338 VAL339 VAL340 GLY341 GLU342 PRO343 THR344 LEU345 MET346 GLY347 GLY348 GLU349 PHE350 GLY351 ASP352 GLU353 ASP354 GLU355 ARG356 LEU357 ILE358 THR359 ARG360 LEU361 GLU362 ASN363 THR364
Unit 10 ASP336 VAL337 MET338 VAL339 VAL340 GLY341 GLU342 PRO343 THR344 LEU345 MET346 GLY347 GLY348 GLU349 PHE350 GLY351 ASP352 GLU353 ASP354 GLU355 ARG356 LEU357 ILE358 THR359 ARG360 LEU361

Ligands
Unit 11 ZN201 ZN202 ZN203 ZN204
Unit 12 ZN201 ZN202 ZN203 ZN204 CL1149
Unit 13 ZN201 ZN202 ZN203 ZN204
Unit 14 ZN201 ZN202 ZN203 ZN204 CL1148
Unit 15 ZN201 ZN202 ZN203 ZN204

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany