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Sequence, Chains, Asymmetric and Biological Units

Title HCV-H77 NS5B APO POLYMERASE
Keywords TRANSFERASE, NONSTRUCTURAL PROTEIN, REPLICATION, RDRP, DE NO PRIMING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2XI2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA-DIRECTED RNA POLYMERASE  A 562 4347 0
2  Protein   RNA-DIRECTED RNA POLYMERASE  B 559 4325 0
3  Protein   RNA-DIRECTED RNA POLYMERASE  C 561 4339 0
4  Ligand   RNA-DIRECTED RNA POLYMERASE  A 7 0 35
5  Ligand   RNA-DIRECTED RNA POLYMERASE  B 7 0 35
6  Ligand   RNA-DIRECTED RNA POLYMERASE  C 6 0 30
7 Water     1264 0 1264
total       2966 13011 1364
Proteins
Unit 1 SER1 MET2 SER3 TYR4 SER5 TRP6 THR7 GLY8 ALA9 LEU10 VAL11 THR12 PRO13 CYS14 ALA15 ALA16 GLU17 GLU18 GLN19 LYS20 LEU21 PRO22 ILE23 ASN24 ALA25 LEU26 SER27 ASN28 SER29 LEU30 LEU31 ARG32 HIS33 HIS34 ASN35 LEU36 VAL37 TYR38 SER39 THR40 THR41 SER42 ARG43 SER44 ALA45 CYS46 GLN47 ARG48 GLN49 LYS50 LYS51 VAL52 THR53 PHE54 ASP55 ARG56 LEU57 GLN58 VAL59 LEU60 ASP61 SER62 HIS63 TYR64 HIS65 ASP66 VAL67 LEU68 LYS69 GLU70 VAL71 LYS72 ALA73 ALA74 ALA75 SER76 LYS77 VAL78 LYS79 ALA80 ASN81 LEU82 LEU83 SER84 VAL85 GLU86 GLU87 ALA88 CYS89 SER90 LEU91 THR92 PRO93 PRO94 HIS95 SER96 ALA97 LYS98 SER99 LYS100 PHE101 GLY102 TYR103 GLY104 ALA105 LYS106 ASP107 VAL108 ARG109 CYS110 HIS111 ALA112 ARG113 LYS114 ALA115 VAL116 ALA117 HIS118 ILE119 ASN120 SER121 VAL122 TRP123 LYS124 ASP125 LEU126 LEU127 GLU128 ASP129 SER130 VAL131 THR132 PRO133 ILE134 ASP135 THR136 THR137 ILE138 MET139 ALA140 LYS141 ASN142 GLU143 VAL144 PHE145 CYS146 VAL147 GLN148 PRO149 GLU150 LYS151 GLY152 GLY153 ARG154 LYS155 PRO156 ALA157 ARG158 LEU159 ILE160 VAL161 PHE162 PRO163 ASP164 LEU165 GLY166 VAL167 ARG168 VAL169 CYS170 GLU171 LYS172 MET173 ALA174 LEU175 TYR176 ASP177 VAL178 VAL179 SER180 LYS181 LEU182 PRO183 LEU184 ALA185 VAL186 MET187 GLY188 SER189 SER190 TYR191 GLY192 PHE193 GLN194 TYR195 SER196 PRO197 GLY198 GLN199 ARG200 VAL201 GLU202 PHE203 LEU204 VAL205 GLN206 ALA207 TRP208 LYS209 SER210 LYS211 LYS212 THR213 PRO214 MET215 GLY216 PHE217 SER218 TYR219 ASP220 THR221 ARG222 CYS223 PHE224 ASP225 SER226 THR227 VAL228 THR229 GLU230 SER231 ASP232 ILE233 ARG234 THR235 GLU236 GLU237 ALA238 ILE239 TYR240 GLN241 CYS242 CYS243 ASP244 LEU245 ASP246 PRO247 GLN248 ALA249 ARG250 VAL251 ALA252 ILE253 LYS254 SER255 LEU256 THR257 GLU258 ARG259 LEU260 TYR261 VAL262 GLY263 GLY264 PRO265 LEU266 THR267 ASN268 SER269 ARG270 GLY271 GLU272 ASN273 CYS274 GLY275 TYR276 ARG277 ARG278 CYS279 ARG280 ALA281 SER282 GLY283 VAL284 LEU285 THR286 THR287 SER288 CYS289 GLY290 ASN291 THR292 LEU293 THR294 CYS295 TYR296 ILE297 LYS298 ALA299 ARG300 ALA301 ALA302 CYS303 ARG304 ALA305 ALA306 GLY307 LEU308 GLN309 ASP310 CYS311 THR312 MET313 LEU314 VAL315 CYS316 GLY317 ASP318 ASP319 LEU320 VAL321 VAL322 ILE323 CYS324 GLU325 SER326 ALA327 GLY328 VAL329 GLN330 GLU331 ASP332 ALA333 ALA334 SER335 LEU336 ARG337 ALA338 PHE339 THR340 GLU341 ALA342 MET343 THR344 ARG345 TYR346 SER347 ALA348 PRO349 PRO350 GLY351 ASP352 PRO353 PRO354 GLN355 PRO356 GLU357 TYR358 ASP359 LEU360 GLU361 LEU362 ILE363 THR364 SER365 CYS366 SER367 SER368 ASN369 VAL370 SER371 VAL372 ALA373 HIS374 ASP375 GLY376 ALA377 GLY378 LYS379 ARG380 VAL381 TYR382 TYR383 LEU384 THR385 ARG386 ASP387 PRO388 THR389 THR390 PRO391 LEU392 ALA393 ARG394 ALA395 ALA396 TRP397 GLU398 THR399 ALA400 ARG401 HIS402 THR403 PRO404 VAL405 ASN406 SER407 TRP408 LEU409 GLY410 ASN411 ILE412 ILE413 MET414 PHE415 ALA416 PRO417 THR418 LEU419 TRP420 ALA421 ARG422 MET423 ILE424 LEU425 MET426 THR427 HIS428 PHE429 PHE430 SER431 VAL432 LEU433 ILE434 ALA435 ARG436 ASP437 GLN438 LEU439 GLU440 GLN441 ALA442 LEU443 ASN444 CYS445 GLU446 ILE447 TYR448 GLY449 ALA450 CYS451 TYR452 SER453 ILE454 GLU455 PRO456 LEU457 ASP458 LEU459 PRO460 PRO461 ILE462 ILE463 GLN464 ARG465 LEU466 HIS467 GLY468 LEU469 SER470 ALA471 PHE472 SER473 LEU474 HIS475 SER476 TYR477 SER478 PRO479 GLY480 GLU481 ILE482 ASN483 ARG484 VAL485 ALA486 ALA487 CYS488 LEU489 ARG490 LYS491 LEU492 GLY493 VAL494 PRO495 PRO496 LEU497 ARG498 ALA499 TRP500 ARG501 HIS502 ARG503 ALA504 ARG505 SER506 VAL507 ARG508 ALA509 ARG510 LEU511 LEU512 SER513 ARG514 GLY515 GLY516 ARG517 ALA518 ALA519 ILE520 CYS521 GLY522 LYS523 TYR524 LEU525 PHE526 ASN527 TRP528 ALA529 VAL530 ARG531 THR532 LYS533 LEU534 LYS535 LEU536 THR537 PRO538 ILE539 ALA540 ALA541 ALA542 GLY543 ARG544 LEU545 ASP546 LEU547 SER548 GLY549 TRP550 PHE551 THR552 ALA553 GLY554 TYR555 SER556 GLY557 GLY558 ASP559 ILE560 TYR561 HIS562
Unit 2 SER1 MET2 SER3 TYR4 SER5 TRP6 THR7 GLY8 ALA9 LEU10 VAL11 THR12 PRO13 CYS14 ALA15 ALA16 GLU17 GLU18 GLN19 LYS20 LEU21 PRO22 ILE23 ASN24 ALA25 LEU26 SER27 ASN28 SER29 LEU30 LEU31 ARG32 HIS33 HIS34 ASN35 LEU36 VAL37 TYR38 SER39 THR40 THR41 SER42 ARG43 SER44 ALA45 CYS46 GLN47 ARG48 GLN49 LYS50 LYS51 VAL52 THR53 PHE54 ASP55 ARG56 LEU57 GLN58 VAL59 LEU60 ASP61 SER62 HIS63 TYR64 HIS65 ASP66 VAL67 LEU68 LYS69 GLU70 VAL71 LYS72 ALA73 ALA74 ALA75 SER76 LYS77 VAL78 LYS79 ALA80 ASN81 LEU82 LEU83 SER84 VAL85 GLU86 GLU87 ALA88 CYS89 SER90 LEU91 THR92 PRO93 PRO94 HIS95 SER96 ALA97 LYS98 SER99 LYS100 PHE101 GLY102 TYR103 GLY104 ALA105 LYS106 ASP107 VAL108 ARG109 CYS110 HIS111 ALA112 ARG113 LYS114 ALA115 VAL116 ALA117 HIS118 ILE119 ASN120 SER121 VAL122 TRP123 LYS124 ASP125 LEU126 LEU127 GLU128 ASP129 SER130 VAL131 THR132 PRO133 ILE134 ASP135 THR136 THR137 ILE138 MET139 ALA140 LYS141 ASN142 GLU143 VAL144 PHE145 CYS146 VAL147 GLN148 PRO149 GLU150 LYS151 GLY152 GLY153 ARG154 LYS155 PRO156 ALA157 ARG158 LEU159 ILE160 VAL161 PHE162 PRO163 ASP164 LEU165 GLY166 VAL167 ARG168 VAL169 CYS170 GLU171 LYS172 MET173 ALA174 LEU175 TYR176 ASP177 VAL178 VAL179 SER180 LYS181 LEU182 PRO183 LEU184 ALA185 VAL186 MET187 GLY188 SER189 SER190 TYR191 GLY192 PHE193 GLN194 TYR195 SER196 PRO197 GLY198 GLN199 ARG200 VAL201 GLU202 PHE203 LEU204 VAL205 GLN206 ALA207 TRP208 LYS209 SER210 LYS211 LYS212 THR213 PRO214 MET215 GLY216 PHE217 SER218 TYR219 ASP220 THR221 ARG222 CYS223 PHE224 ASP225 SER226 THR227 VAL228 THR229 GLU230 SER231 ASP232 ILE233 ARG234 THR235 GLU236 GLU237 ALA238 ILE239 TYR240 GLN241 CYS242 CYS243 ASP244 LEU245 ASP246 PRO247 GLN248 ALA249 ARG250 VAL251 ALA252 ILE253 LYS254 SER255 LEU256 THR257 GLU258 ARG259 LEU260 TYR261 VAL262 GLY263 GLY264 PRO265 LEU266 THR267 ASN268 SER269 ARG270 GLY271 GLU272 ASN273 CYS274 GLY275 TYR276 ARG277 ARG278 CYS279 ARG280 ALA281 SER282 GLY283 VAL284 LEU285 THR286 THR287 SER288 CYS289 GLY290 ASN291 THR292 LEU293 THR294 CYS295 TYR296 ILE297 LYS298 ALA299 ARG300 ALA301 ALA302 CYS303 ARG304 ALA305 ALA306 GLY307 LEU308 GLN309 ASP310 CYS311 THR312 MET313 LEU314 VAL315 CYS316 GLY317 ASP318 ASP319 LEU320 VAL321 VAL322 ILE323 CYS324 GLU325 SER326 ALA327 GLY328 VAL329 GLN330 GLU331 ASP332 ALA333 ALA334 SER335 LEU336 ARG337 ALA338 PHE339 THR340 GLU341 ALA342 MET343 THR344 ARG345 TYR346 SER347 ALA348 PRO349 PRO350 GLY351 ASP352 PRO353 PRO354 GLN355 PRO356 GLU357 TYR358 ASP359 LEU360 GLU361 LEU362 ILE363 THR364 SER365 CYS366 SER367 SER368 ASN369 VAL370 SER371 VAL372 ALA373 HIS374 ASP375 GLY376 ALA377 GLY378 LYS379 ARG380 VAL381 TYR382 TYR383 LEU384 THR385 ARG386 ASP387 PRO388 THR389 THR390 PRO391 LEU392 ALA393 ARG394 ALA395 ALA396 TRP397 GLU398 THR399 ALA400 ARG401 HIS402 THR403 PRO404 VAL405 ASN406 SER407 TRP408 LEU409 GLY410 ASN411 ILE412 ILE413 MET414 PHE415 ALA416 PRO417 THR418 LEU419 TRP420 ALA421 ARG422 MET423 ILE424 LEU425 MET426 THR427 HIS428 PHE429 PHE430 SER431 VAL432 LEU433 ILE434 ALA435 ARG436 ASP437 GLN438 LEU439 GLU440 GLN441 ALA442 LEU443 ASN444 CYS445 GLU446 ILE447 TYR448 GLY449 ALA450 CYS451 TYR452 SER453 ILE454 GLU455 PRO456 LEU457 ASP458 LEU459 PRO460 PRO461 ILE462 ILE463 GLN464 ARG465 LEU466 HIS467 GLY468 LEU469 SER470 ALA471 PHE472 SER473 LEU474 HIS475 SER476 TYR477 SER478 PRO479 GLY480 GLU481 ILE482 ASN483 ARG484 VAL485 ALA486 ALA487 CYS488 LEU489 ARG490 LYS491 LEU492 GLY493 VAL494 PRO495 PRO496 LEU497 ARG498 ALA499 TRP500 ARG501 HIS502 ARG503 ALA504 ARG505 SER506 VAL507 ARG508 ALA509 ARG510 LEU511 LEU512 SER513 ARG514 GLY515 GLY516 ARG517 ALA518 ALA519 ILE520 CYS521 GLY522 LYS523 TYR524 LEU525 PHE526 ASN527 TRP528 ALA529 VAL530 ARG531 THR532 LYS533 LEU534 LYS535 LEU536 THR537 PRO538 ILE539 ALA540 ALA541 ALA542 GLY543 ARG544 LEU545 GLY549 TRP550 PHE551 THR552 ALA553 GLY554 TYR555 SER556 GLY557 GLY558 ASP559 ILE560 TYR561 HIS562
Unit 3 SER1 MET2 SER3 TYR4 SER5 TRP6 THR7 GLY8 ALA9 LEU10 VAL11 THR12 PRO13 CYS14 ALA15 ALA16 GLU17 GLU18 GLN19 LYS20 LEU21 PRO22 ILE23 ASN24 ALA25 LEU26 SER27 ASN28 SER29 LEU30 LEU31 ARG32 HIS33 HIS34 ASN35 LEU36 VAL37 TYR38 SER39 THR40 THR41 SER42 ARG43 SER44 ALA45 CYS46 GLN47 ARG48 GLN49 LYS50 LYS51 VAL52 THR53 PHE54 ASP55 ARG56 LEU57 GLN58 VAL59 LEU60 ASP61 SER62 HIS63 TYR64 HIS65 ASP66 VAL67 LEU68 LYS69 GLU70 VAL71 LYS72 ALA73 ALA74 ALA75 SER76 LYS77 VAL78 LYS79 ALA80 ASN81 LEU82 LEU83 SER84 VAL85 GLU86 GLU87 ALA88 CYS89 SER90 LEU91 THR92 PRO93 PRO94 HIS95 SER96 ALA97 LYS98 SER99 LYS100 PHE101 GLY102 TYR103 GLY104 ALA105 LYS106 ASP107 VAL108 ARG109 CYS110 HIS111 ALA112 ARG113 LYS114 ALA115 VAL116 ALA117 HIS118 ILE119 ASN120 SER121 VAL122 TRP123 LYS124 ASP125 LEU126 LEU127 GLU128 ASP129 SER130 VAL131 THR132 PRO133 ILE134 ASP135 THR136 THR137 ILE138 MET139 ALA140 LYS141 ASN142 GLU143 VAL144 PHE145 CYS146 VAL147 GLN148 PRO149 GLU150 LYS151 GLY152 GLY153 ARG154 LYS155 PRO156 ALA157 ARG158 LEU159 ILE160 VAL161 PHE162 PRO163 ASP164 LEU165 GLY166 VAL167 ARG168 VAL169 CYS170 GLU171 LYS172 MET173 ALA174 LEU175 TYR176 ASP177 VAL178 VAL179 SER180 LYS181 LEU182 PRO183 LEU184 ALA185 VAL186 MET187 GLY188 SER189 SER190 TYR191 GLY192 PHE193 GLN194 TYR195 SER196 PRO197 GLY198 GLN199 ARG200 VAL201 GLU202 PHE203 LEU204 VAL205 GLN206 ALA207 TRP208 LYS209 SER210 LYS211 LYS212 THR213 PRO214 MET215 GLY216 PHE217 SER218 TYR219 ASP220 THR221 ARG222 CYS223 PHE224 ASP225 SER226 THR227 VAL228 THR229 GLU230 SER231 ASP232 ILE233 ARG234 THR235 GLU236 GLU237 ALA238 ILE239 TYR240 GLN241 CYS242 CYS243 ASP244 LEU245 ASP246 PRO247 GLN248 ALA249 ARG250 VAL251 ALA252 ILE253 LYS254 SER255 LEU256 THR257 GLU258 ARG259 LEU260 TYR261 VAL262 GLY263 GLY264 PRO265 LEU266 THR267 ASN268 SER269 ARG270 GLY271 GLU272 ASN273 CYS274 GLY275 TYR276 ARG277 ARG278 CYS279 ARG280 ALA281 SER282 GLY283 VAL284 LEU285 THR286 THR287 SER288 CYS289 GLY290 ASN291 THR292 LEU293 THR294 CYS295 TYR296 ILE297 LYS298 ALA299 ARG300 ALA301 ALA302 CYS303 ARG304 ALA305 ALA306 GLY307 LEU308 GLN309 ASP310 CYS311 THR312 MET313 LEU314 VAL315 CYS316 GLY317 ASP318 ASP319 LEU320 VAL321 VAL322 ILE323 CYS324 GLU325 SER326 ALA327 GLY328 VAL329 GLN330 GLU331 ASP332 ALA333 ALA334 SER335 LEU336 ARG337 ALA338 PHE339 THR340 GLU341 ALA342 MET343 THR344 ARG345 TYR346 SER347 ALA348 PRO349 PRO350 GLY351 ASP352 PRO353 PRO354 GLN355 PRO356 GLU357 TYR358 ASP359 LEU360 GLU361 LEU362 ILE363 THR364 SER365 CYS366 SER367 SER368 ASN369 VAL370 SER371 VAL372 ALA373 HIS374 ASP375 GLY376 ALA377 GLY378 LYS379 ARG380 VAL381 TYR382 TYR383 LEU384 THR385 ARG386 ASP387 PRO388 THR389 THR390 PRO391 LEU392 ALA393 ARG394 ALA395 ALA396 TRP397 GLU398 THR399 ALA400 ARG401 HIS402 THR403 PRO404 VAL405 ASN406 SER407 TRP408 LEU409 GLY410 ASN411 ILE412 ILE413 MET414 PHE415 ALA416 PRO417 THR418 LEU419 TRP420 ALA421 ARG422 MET423 ILE424 LEU425 MET426 THR427 HIS428 PHE429 PHE430 SER431 VAL432 LEU433 ILE434 ALA435 ARG436 ASP437 GLN438 LEU439 GLU440 GLN441 ALA442 LEU443 ASN444 CYS445 GLU446 ILE447 TYR448 GLY449 ALA450 CYS451 TYR452 SER453 ILE454 GLU455 PRO456 LEU457 ASP458 LEU459 PRO460 PRO461 ILE462 ILE463 GLN464 ARG465 LEU466 HIS467 GLY468 LEU469 SER470 ALA471 PHE472 SER473 LEU474 HIS475 SER476 TYR477 SER478 PRO479 GLY480 GLU481 ILE482 ASN483 ARG484 VAL485 ALA486 ALA487 CYS488 LEU489 ARG490 LYS491 LEU492 GLY493 VAL494 PRO495 PRO496 LEU497 ARG498 ALA499 TRP500 ARG501 HIS502 ARG503 ALA504 ARG505 SER506 VAL507 ARG508 ALA509 ARG510 LEU511 LEU512 SER513 ARG514 GLY515 GLY516 ARG517 ALA518 ALA519 ILE520 CYS521 GLY522 LYS523 TYR524 LEU525 PHE526 ASN527 TRP528 ALA529 VAL530 ARG531 THR532 LYS533 LEU534 LYS535 LEU536 THR537 PRO538 ILE539 ALA540 ALA541 ALA542 GLY543 ARG544 LEU545 LEU547 SER548 GLY549 TRP550 PHE551 THR552 ALA553 GLY554 TYR555 SER556 GLY557 GLY558 ASP559 ILE560 TYR561 HIS562
Ligands
Unit 4 SO41563 SO41564 SO41565 SO41566 SO41567 SO41568 SO41569
Unit 5 SO41563 SO41564 SO41565 SO41566 SO41567 SO41568 SO41569
Unit 6 SO41563 SO41564 SO41565 SO41566 SO41567 SO41568
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany