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Sequence, Chains, Asymmetric and Biological Units

Title ENGINEERING THE ENOLASE ACTIVE SITE POCKET: CRYSTAL STRUCTURE OF THE S39A D321A MUTANT OF YEAST ENOLASE 1
Keywords LYASE, TIM-BARREL, ENOLASE SUPERFAMILY, GLYCOLYSIS, GLUCONEO METAL BINDING
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2XH4     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENOLASE 1  A 438 3264 0
2  Protein   ENOLASE 1  B 415 3059 0
3  Protein   ENOLASE 1  C 438 3264 0
4  Protein   ENOLASE 1  D 415 3055 0
5  Ligand   ENOLASE 1  A 2 0 12
6  Ligand   ENOLASE 1  B 4 0 14
7  Ligand   ENOLASE 1  C 2 0 12
8  Ligand   ENOLASE 1  D 3 0 13
9 Water     1693 0 1693
total       3410 12642 1744

Proteins
Unit 1 ALA1 VAL2 SER3 LYS4 VAL5 TYR6 ALA7 ARG8 SER9 VAL10 TYR11 ASP12 SER13 ARG14 GLY15 ASN16 PRO17 THR18 VAL19 GLU20 VAL21 GLU22 LEU23 THR24 THR25 GLU26 LYS27 GLY28 VAL29 PHE30 ARG31 SER32 ILE33 VAL34 PRO35 SER36 GLY37 ALA38 ALA39 THR40 GLY41 VAL42 HIS43 GLU44 ALA45 LEU46 GLU47 MET48 ARG49 ASP50 GLY51 ASP52 LYS53 SER54 LYS55 TRP56 MET57 GLY58 LYS59 GLY60 VAL61 LEU62 HIS63 ALA64 VAL65 LYS66 ASN67 VAL68 ASN69 ASP70 VAL71 ILE72 ALA73 PRO74 ALA75 PHE76 VAL77 LYS78 ALA79 ASN80 ILE81 ASP82 VAL83 LYS84 ASP85 GLN86 LYS87 ALA88 VAL89 ASP90 ASP91 PHE92 LEU93 ILE94 SER95 LEU96 ASP97 GLY98 THR99 ALA100 ASN101 LYS102 SER103 LYS104 LEU105 GLY106 ALA107 ASN108 ALA109 ILE110 LEU111 GLY112 VAL113 SER114 LEU115 ALA116 ALA117 SER118 ARG119 ALA120 ALA121 ALA122 ALA123 GLU124 LYS125 ASN126 VAL127 PRO128 LEU129 TYR130 LYS131 HIS132 LEU133 ALA134 ASP135 LEU136 SER137 LYS138 SER139 LYS140 THR141 SER142 PRO143 TYR144 VAL145 LEU146 PRO147 VAL148 PRO149 PHE150 LEU151 ASN152 VAL153 LEU154 ASN155 GLY156 GLY157 SER158 HIS159 ALA160 GLY161 GLY162 ALA163 LEU164 ALA165 LEU166 GLN167 GLU168 PHE169 MET170 ILE171 ALA172 PRO173 THR174 GLY175 ALA176 LYS177 THR178 PHE179 ALA180 GLU181 ALA182 LEU183 ARG184 ILE185 GLY186 SER187 GLU188 VAL189 TYR190 HIS191 ASN192 LEU193 LYS194 SER195 LEU196 THR197 LYS198 LYS199 ARG200 TYR201 GLY202 ALA203 SER204 ALA205 GLY206 ASN207 VAL208 GLY209 ASP210 GLU211 GLY212 GLY213 VAL214 ALA215 PRO216 ASN217 ILE218 GLN219 THR220 ALA221 GLU222 GLU223 ALA224 LEU225 ASP226 LEU227 ILE228 VAL229 ASP230 ALA231 ILE232 LYS233 ALA234 ALA235 GLY236 HIS237 ASP238 GLY239 LYS240 ILE241 LYS242 ILE243 GLY244 LEU245 ASP246 CYS247 ALA248 SER249 SER250 GLU251 PHE252 PHE253 LYS254 ASP255 GLY256 LYS257 TYR258 ASP259 LEU260 ASP261 PHE262 LYS263 ASN264 PRO265 ASN266 SER267 ASP268 LYS269 SER270 LYS271 TRP272 LEU273 THR274 GLY275 PRO276 GLN277 LEU278 ALA279 ASP280 LEU281 TYR282 HIS283 SER284 LEU285 MET286 LYS287 ARG288 TYR289 PRO290 ILE291 VAL292 SER293 ILE294 GLU295 ASP296 PRO297 PHE298 ALA299 GLU300 ASP301 ASP302 TRP303 GLU304 ALA305 TRP306 SER307 HIS308 PHE309 PHE310 LYS311 THR312 ALA313 GLY314 ILE315 GLN316 ILE317 VAL318 ALA319 ASP320 ALA321 LEU322 THR323 VAL324 THR325 ASN326 PRO327 LYS328 ARG329 ILE330 ALA331 THR332 ALA333 ILE334 GLU335 LYS336 LYS337 ALA338 ALA339 ASP340 ALA341 LEU342 LEU343 LEU344 LYS345 VAL346 ASN347 GLN348 ILE349 GLY350 THR351 LEU352 SER353 GLU354 SER355 ILE356 LYS357 ALA358 ALA359 GLN360 ASP361 SER362 PHE363 ALA364 ALA365 GLY366 TRP367 GLY368 VAL369 MET370 VAL371 SER372 HIS373 ARG374 SER375 GLY376 GLU377 THR378 GLU379 ASP380 THR381 PHE382 ILE383 ALA384 ASP385 LEU386 VAL387 VAL388 GLY389 LEU390 ARG391 THR392 GLY393 GLN394 ILE395 LYS396 THR397 GLY398 ALA399 PRO400 ALA401 ARG402 SER403 GLU404 ARG405 LEU406 ALA407 LYS408 LEU409 ASN410 GLN411 LEU412 LEU413 ARG414 ILE415 GLU416 GLU417 GLU418 LEU419 GLY420 ASP421 ASN422 ALA423 VAL424 PHE425 ALA426 GLY427 GLU428 ASN429 PHE430 HIS431 HIS432 GLY433 ASP434 LYS435 LEU436 LEU437 HIS438
Unit 2 ALA1 VAL2 SER3 LYS4 VAL5 TYR6 ALA7 ARG8 SER9 VAL10 TYR11 ASP12 SER13 ARG14 GLY15 ASN16 PRO17 THR18 VAL19 GLU20 VAL21 GLU22 LEU23 THR24 THR25 GLU26 LYS27 GLY28 VAL29 PHE30 ARG31 SER32 ILE33 VAL34 PRO35 SER36 GLY37 GLY60 VAL61 LEU62 HIS63 ALA64 VAL65 LYS66 ASN67 VAL68 ASN69 ASP70 VAL71 ILE72 ALA73 PRO74 ALA75 PHE76 VAL77 LYS78 ALA79 ASN80 ILE81 ASP82 VAL83 LYS84 ASP85 GLN86 LYS87 ALA88 VAL89 ASP90 ASP91 PHE92 LEU93 ILE94 SER95 LEU96 ASP97 GLY98 THR99 ALA100 ASN101 LYS102 SER103 LYS104 LEU105 GLY106 ALA107 ASN108 ALA109 ILE110 LEU111 GLY112 VAL113 SER114 LEU115 ALA116 ALA117 SER118 ARG119 ALA120 ALA121 ALA122 ALA123 GLU124 LYS125 ASN126 VAL127 PRO128 LEU129 TYR130 LYS131 HIS132 LEU133 ALA134 ASP135 LEU136 SER137 LYS138 SER139 LYS140 THR141 SER142 PRO143 TYR144 VAL145 LEU146 PRO147 VAL148 PRO149 PHE150 LEU151 ASN152 VAL153 LEU154 ASN155 GLY156 GLY157 SER158 HIS159 ALA160 GLY161 GLY162 ALA163 LEU164 ALA165 LEU166 GLN167 GLU168 PHE169 MET170 ILE171 ALA172 PRO173 THR174 GLY175 ALA176 LYS177 THR178 PHE179 ALA180 GLU181 ALA182 LEU183 ARG184 ILE185 GLY186 SER187 GLU188 VAL189 TYR190 HIS191 ASN192 LEU193 LYS194 SER195 LEU196 THR197 LYS198 LYS199 ARG200 TYR201 GLY202 ALA203 SER204 ALA205 GLY206 ASN207 VAL208 GLY209 ASP210 GLU211 GLY212 GLY213 VAL214 ALA215 PRO216 ASN217 ILE218 GLN219 THR220 ALA221 GLU222 GLU223 ALA224 LEU225 ASP226 LEU227 ILE228 VAL229 ASP230 ALA231 ILE232 LYS233 ALA234 ALA235 GLY236 HIS237 ASP238 GLY239 LYS240 ILE241 LYS242 ILE243 GLY244 LEU245 ASP246 CYS247 ALA248 SER249 SER250 GLU251 PHE252 PHE253 LYS254 ASP255 GLY256 LYS257 TYR258 ASP259 LEU260 ASP261 PHE262 LYS263 ASN264 ASN266 SER267 ASP268 LYS269 SER270 LYS271 TRP272 LEU273 THR274 GLY275 PRO276 GLN277 LEU278 ALA279 ASP280 LEU281 TYR282 HIS283 SER284 LEU285 MET286 LYS287 ARG288 TYR289 PRO290 ILE291 VAL292 SER293 ILE294 GLU295 ASP296 PRO297 PHE298 ALA299 GLU300 ASP301 ASP302 TRP303 GLU304 ALA305 TRP306 SER307 HIS308 PHE309 PHE310 LYS311 THR312 ALA313 GLY314 ILE315 GLN316 ILE317 VAL318 ALA319 ASP320 ALA321 LEU322 THR323 VAL324 THR325 ASN326 PRO327 LYS328 ARG329 ILE330 ALA331 THR332 ALA333 ILE334 GLU335 LYS336 LYS337 ALA338 ALA339 ASP340 ALA341 LEU342 LEU343 LEU344 LYS345 VAL346 ASN347 GLN348 ILE349 GLY350 THR351 LEU352 SER353 GLU354 SER355 ILE356 LYS357 ALA358 ALA359 GLN360 ASP361 SER362 PHE363 ALA364 ALA365 GLY366 TRP367 GLY368 VAL369 MET370 VAL371 SER372 HIS373 ARG374 SER375 GLY376 GLU377 THR378 GLU379 ASP380 THR381 PHE382 ILE383 ALA384 ASP385 LEU386 VAL387 VAL388 GLY389 LEU390 ARG391 THR392 GLY393 GLN394 ILE395 LYS396 THR397 GLY398 ALA399 PRO400 ALA401 ARG402 SER403 GLU404 ARG405 LEU406 ALA407 LYS408 LEU409 ASN410 GLN411 LEU412 LEU413 ARG414 ILE415 GLU416 GLU417 GLU418 LEU419 GLY420 ASP421 ASN422 ALA423 VAL424 PHE425 ALA426 GLY427 GLU428 ASN429 PHE430 HIS431 HIS432 GLY433 ASP434 LYS435 LEU436 LEU437 HIS438
Unit 3 ALA1 VAL2 SER3 LYS4 VAL5 TYR6 ALA7 ARG8 SER9 VAL10 TYR11 ASP12 SER13 ARG14 GLY15 ASN16 PRO17 THR18 VAL19 GLU20 VAL21 GLU22 LEU23 THR24 THR25 GLU26 LYS27 GLY28 VAL29 PHE30 ARG31 SER32 ILE33 VAL34 PRO35 SER36 GLY37 ALA38 ALA39 THR40 GLY41 VAL42 HIS43 GLU44 ALA45 LEU46 GLU47 MET48 ARG49 ASP50 GLY51 ASP52 LYS53 SER54 LYS55 TRP56 MET57 GLY58 LYS59 GLY60 VAL61 LEU62 HIS63 ALA64 VAL65 LYS66 ASN67 VAL68 ASN69 ASP70 VAL71 ILE72 ALA73 PRO74 ALA75 PHE76 VAL77 LYS78 ALA79 ASN80 ILE81 ASP82 VAL83 LYS84 ASP85 GLN86 LYS87 ALA88 VAL89 ASP90 ASP91 PHE92 LEU93 ILE94 SER95 LEU96 ASP97 GLY98 THR99 ALA100 ASN101 LYS102 SER103 LYS104 LEU105 GLY106 ALA107 ASN108 ALA109 ILE110 LEU111 GLY112 VAL113 SER114 LEU115 ALA116 ALA117 SER118 ARG119 ALA120 ALA121 ALA122 ALA123 GLU124 LYS125 ASN126 VAL127 PRO128 LEU129 TYR130 LYS131 HIS132 LEU133 ALA134 ASP135 LEU136 SER137 LYS138 SER139 LYS140 THR141 SER142 PRO143 TYR144 VAL145 LEU146 PRO147 VAL148 PRO149 PHE150 LEU151 ASN152 VAL153 LEU154 ASN155 GLY156 GLY157 SER158 HIS159 ALA160 GLY161 GLY162 ALA163 LEU164 ALA165 LEU166 GLN167 GLU168 PHE169 MET170 ILE171 ALA172 PRO173 THR174 GLY175 ALA176 LYS177 THR178 PHE179 ALA180 GLU181 ALA182 LEU183 ARG184 ILE185 GLY186 SER187 GLU188 VAL189 TYR190 HIS191 ASN192 LEU193 LYS194 SER195 LEU196 THR197 LYS198 LYS199 ARG200 TYR201 GLY202 ALA203 SER204 ALA205 GLY206 ASN207 VAL208 GLY209 ASP210 GLU211 GLY212 GLY213 VAL214 ALA215 PRO216 ASN217 ILE218 GLN219 THR220 ALA221 GLU222 GLU223 ALA224 LEU225 ASP226 LEU227 ILE228 VAL229 ASP230 ALA231 ILE232 LYS233 ALA234 ALA235 GLY236 HIS237 ASP238 GLY239 LYS240 ILE241 LYS242 ILE243 GLY244 LEU245 ASP246 CYS247 ALA248 SER249 SER250 GLU251 PHE252 PHE253 LYS254 ASP255 GLY256 LYS257 TYR258 ASP259 LEU260 ASP261 PHE262 LYS263 ASN264 PRO265 ASN266 SER267 ASP268 LYS269 SER270 LYS271 TRP272 LEU273 THR274 GLY275 PRO276 GLN277 LEU278 ALA279 ASP280 LEU281 TYR282 HIS283 SER284 LEU285 MET286 LYS287 ARG288 TYR289 PRO290 ILE291 VAL292 SER293 ILE294 GLU295 ASP296 PRO297 PHE298 ALA299 GLU300 ASP301 ASP302 TRP303 GLU304 ALA305 TRP306 SER307 HIS308 PHE309 PHE310 LYS311 THR312 ALA313 GLY314 ILE315 GLN316 ILE317 VAL318 ALA319 ASP320 ALA321 LEU322 THR323 VAL324 THR325 ASN326 PRO327 LYS328 ARG329 ILE330 ALA331 THR332 ALA333 ILE334 GLU335 LYS336 LYS337 ALA338 ALA339 ASP340 ALA341 LEU342 LEU343 LEU344 LYS345 VAL346 ASN347 GLN348 ILE349 GLY350 THR351 LEU352 SER353 GLU354 SER355 ILE356 LYS357 ALA358 ALA359 GLN360 ASP361 SER362 PHE363 ALA364 ALA365 GLY366 TRP367 GLY368 VAL369 MET370 VAL371 SER372 HIS373 ARG374 SER375 GLY376 GLU377 THR378 GLU379 ASP380 THR381 PHE382 ILE383 ALA384 ASP385 LEU386 VAL387 VAL388 GLY389 LEU390 ARG391 THR392 GLY393 GLN394 ILE395 LYS396 THR397 GLY398 ALA399 PRO400 ALA401 ARG402 SER403 GLU404 ARG405 LEU406 ALA407 LYS408 LEU409 ASN410 GLN411 LEU412 LEU413 ARG414 ILE415 GLU416 GLU417 GLU418 LEU419 GLY420 ASP421 ASN422 ALA423 VAL424 PHE425 ALA426 GLY427 GLU428 ASN429 PHE430 HIS431 HIS432 GLY433 ASP434 LYS435 LEU436 LEU437 HIS438
Unit 4 ALA1 VAL2 SER3 LYS4 VAL5 TYR6 ALA7 ARG8 SER9 VAL10 TYR11 ASP12 SER13 ARG14 GLY15 ASN16 PRO17 THR18 VAL19 GLU20 VAL21 GLU22 LEU23 THR24 THR25 GLU26 LYS27 GLY28 VAL29 PHE30 ARG31 SER32 ILE33 VAL34 PRO35 SER36 GLY37 GLY60 VAL61 LEU62 HIS63 ALA64 VAL65 LYS66 ASN67 VAL68 ASN69 ASP70 VAL71 ILE72 ALA73 PRO74 ALA75 PHE76 VAL77 LYS78 ALA79 ASN80 ILE81 ASP82 VAL83 LYS84 ASP85 GLN86 LYS87 ALA88 VAL89 ASP90 ASP91 PHE92 LEU93 ILE94 SER95 LEU96 ASP97 GLY98 THR99 ALA100 ASN101 LYS102 SER103 LYS104 LEU105 GLY106 ALA107 ASN108 ALA109 ILE110 LEU111 GLY112 VAL113 SER114 LEU115 ALA116 ALA117 SER118 ARG119 ALA120 ALA121 ALA122 ALA123 GLU124 LYS125 ASN126 VAL127 PRO128 LEU129 TYR130 LYS131 HIS132 LEU133 ALA134 ASP135 LEU136 SER137 LYS138 SER139 LYS140 THR141 SER142 PRO143 TYR144 VAL145 LEU146 PRO147 VAL148 PRO149 PHE150 LEU151 ASN152 VAL153 LEU154 ASN155 GLY156 GLY157 SER158 HIS159 ALA160 GLY161 GLY162 ALA163 LEU164 ALA165 LEU166 GLN167 GLU168 PHE169 MET170 ILE171 ALA172 PRO173 THR174 GLY175 ALA176 LYS177 THR178 PHE179 ALA180 GLU181 ALA182 LEU183 ARG184 ILE185 GLY186 SER187 GLU188 VAL189 TYR190 HIS191 ASN192 LEU193 LYS194 SER195 LEU196 THR197 LYS198 LYS199 ARG200 TYR201 GLY202 ALA203 SER204 ALA205 GLY206 ASN207 VAL208 GLY209 ASP210 GLU211 GLY212 GLY213 VAL214 ALA215 PRO216 ASN217 ILE218 GLN219 THR220 ALA221 GLU222 GLU223 ALA224 LEU225 ASP226 LEU227 ILE228 VAL229 ASP230 ALA231 ILE232 LYS233 ALA234 ALA235 GLY236 HIS237 ASP238 GLY239 LYS240 ILE241 LYS242 ILE243 GLY244 LEU245 ASP246 CYS247 ALA248 SER249 SER250 GLU251 PHE252 PHE253 LYS254 ASP255 GLY256 LYS257 TYR258 ASP259 LEU260 ASP261 PHE262 LYS263 ASN264 ASN266 SER267 ASP268 LYS269 SER270 LYS271 TRP272 LEU273 THR274 GLY275 PRO276 GLN277 LEU278 ALA279 ASP280 LEU281 TYR282 HIS283 SER284 LEU285 MET286 LYS287 ARG288 TYR289 PRO290 ILE291 VAL292 SER293 ILE294 GLU295 ASP296 PRO297 PHE298 ALA299 GLU300 ASP301 ASP302 TRP303 GLU304 ALA305 TRP306 SER307 HIS308 PHE309 PHE310 LYS311 THR312 ALA313 GLY314 ILE315 GLN316 ILE317 VAL318 ALA319 ASP320 ALA321 LEU322 THR323 VAL324 THR325 ASN326 PRO327 LYS328 ARG329 ILE330 ALA331 THR332 ALA333 ILE334 GLU335 LYS336 LYS337 ALA338 ALA339 ASP340 ALA341 LEU342 LEU343 LEU344 LYS345 VAL346 ASN347 GLN348 ILE349 GLY350 THR351 LEU352 SER353 GLU354 SER355 ILE356 LYS357 ALA358 ALA359 GLN360 ASP361 SER362 PHE363 ALA364 ALA365 GLY366 TRP367 GLY368 VAL369 MET370 VAL371 SER372 HIS373 ARG374 SER375 GLY376 GLU377 THR378 GLU379 ASP380 THR381 PHE382 ILE383 ALA384 ASP385 LEU386 VAL387 VAL388 GLY389 LEU390 ARG391 THR392 GLY393 GLN394 ILE395 LYS396 THR397 GLY398 ALA399 PRO400 ALA401 ARG402 SER403 GLU404 ARG405 LEU406 ALA407 LYS408 LEU409 ASN410 GLN411 LEU412 LEU413 ARG414 ILE415 GLU416 GLU417 GLU418 LEU419 GLY420 ASP421 ASN422 ALA423 VAL424 PHE425 ALA426 GLY427 GLU428 ASN429 PHE430 HIS431 HIS432 GLY433 ASP434 LYS435 LEU436 LEU437 HIS438

Ligands
Unit 5 MG1439 2PG1440
Unit 6 MG1439 2PG1440 MG1441 MG1442
Unit 7 MG1439 2PG1440
Unit 8 MG1439 2PG1440 MG1441

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany