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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL INSIGHTS INTO THE BINDING OF VEGF-B BY VEGFR-1D2: RECOGNITION AND SPECIFICITY
Keywords TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT PROTEIN, MITOGEN, TRANSFERASE, SIGNALING PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2XAC     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VASCULAR ENDOTHELIAL GROWTH FACTOR B  A 99 748 0
2  Protein   VASCULAR ENDOTHELIAL GROWTH FACTOR B  B 98 716 0
3  Protein   VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1  C 98 744 0
4  Protein   VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1  X 95 766 0
5  Ligand   VASCULAR ENDOTHELIAL GROWTH FACTOR B  B 1 0 6
6 Water     33 0 33
total       424 2974 39

Proteins
Unit 1 HIS10 GLN11 ARG12 LYS13 VAL14 VAL15 SER16 TRP17 ILE18 ASP19 VAL20 TYR21 THR22 ARG23 ALA24 THR25 CYS26 GLN27 PRO28 ARG29 GLU30 VAL31 VAL32 VAL33 PRO34 LEU35 THR36 VAL37 GLU38 LEU39 MET40 GLY41 THR42 VAL43 ALA44 LYS45 GLN46 LEU47 VAL48 PRO49 SER50 CYS51 VAL52 THR53 VAL54 GLN55 ARG56 CYS57 GLY58 GLY59 CYS60 CYS61 PRO62 ASP63 ASP64 GLY65 LEU66 GLU67 CYS68 VAL69 PRO70 THR71 GLY72 GLN73 HIS74 GLN75 VAL76 ARG77 MET78 GLN79 ILE80 LEU81 MET82 ILE83 ARG84 TYR85 PRO86 SER87 SER88 GLN89 LEU90 GLY91 GLU92 MET93 SER94 LEU95 GLU96 GLU97 HIS98 SER99 GLN100 CYS101 GLU102 CYS103 ARG104 PRO105 LYS106 LYS107 LYS108
Unit 2 GLN11 ARG12 LYS13 VAL14 VAL15 SER16 TRP17 ILE18 ASP19 VAL20 TYR21 THR22 ARG23 ALA24 THR25 CYS26 GLN27 PRO28 ARG29 GLU30 VAL31 VAL32 VAL33 PRO34 LEU35 THR36 VAL37 GLU38 LEU39 MET40 GLY41 THR42 VAL43 ALA44 LYS45 GLN46 LEU47 VAL48 PRO49 SER50 CYS51 VAL52 THR53 VAL54 GLN55 ARG56 CYS57 GLY58 GLY59 CYS60 CYS61 PRO62 ASP63 ASP64 GLY65 LEU66 GLU67 CYS68 VAL69 PRO70 THR71 GLY72 GLN73 HIS74 GLN75 VAL76 ARG77 MET78 GLN79 ILE80 LEU81 MET82 ILE83 ARG84 TYR85 PRO86 SER87 SER88 GLN89 LEU90 GLY91 GLU92 MET93 SER94 LEU95 GLU96 GLU97 HIS98 SER99 GLN100 CYS101 GLU102 CYS103 ARG104 PRO105 LYS106 LYS107 LYS108
Unit 3 SER129 ASP130 THR131 GLY132 ARG133 PRO134 PHE135 VAL136 GLU137 MET138 TYR139 SER140 GLU141 ILE142 PRO143 GLU144 ILE145 ILE146 HIS147 MET148 THR149 GLU150 GLY151 ARG152 GLU153 LEU154 VAL155 ILE156 PRO157 CYS158 ARG159 VAL160 THR161 SER162 PRO163 ASN164 ILE165 THR166 VAL167 THR168 LEU169 LYS170 LYS171 PHE172 PRO173 LEU174 ASP175 THR176 LEU177 ILE178 PRO179 ASP180 GLY181 LYS182 ARG183 ILE184 ILE185 TRP186 ASP187 SER188 ARG189 LYS190 GLY191 PHE192 ILE193 ILE194 SER195 ASN196 ALA197 THR198 TYR199 LYS200 GLU201 ILE202 GLY203 LEU204 LEU205 THR206 CYS207 GLU208 ALA209 THR210 VAL211 ASN212 GLY213 HIS214 LEU215 TYR216 LYS217 THR218 ASN219 TYR220 LEU221 THR222 HIS223 ARG224 GLN225 THR226
Unit 4 GLY132 ARG133 PRO134 PHE135 VAL136 GLU137 MET138 TYR139 SER140 GLU141 ILE142 PRO143 GLU144 ILE145 ILE146 HIS147 MET148 THR149 GLU150 GLY151 ARG152 GLU153 LEU154 VAL155 ILE156 PRO157 CYS158 ARG159 VAL160 THR161 SER162 PRO163 ASN164 ILE165 THR166 VAL167 THR168 LEU169 LYS170 LYS171 PHE172 PRO173 LEU174 ASP175 THR176 LEU177 ILE178 PRO179 ASP180 GLY181 LYS182 ARG183 ILE184 ILE185 TRP186 ASP187 SER188 ARG189 LYS190 GLY191 PHE192 ILE193 ILE194 SER195 ASN196 ALA197 THR198 TYR199 LYS200 GLU201 ILE202 GLY203 LEU204 LEU205 THR206 CYS207 GLU208 ALA209 THR210 VAL211 ASN212 GLY213 HIS214 LEU215 TYR216 LYS217 THR218 ASN219 TYR220 LEU221 THR222 HIS223 ARG224 GLN225 THR226

Ligands
Unit 5 GOL1109

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany