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Title | CRYSTAL STRUCTURE OF HUMAN TBX5 IN THE DNA-BOUND AND DNA- FREE FORM | |
Keywords | TRANSCRIPTION-DNA COMPLEX, HOLT-ORAM-SYNDROME, DEVELOPMENTAL PROTEIN, TRANSCRIPTION REGULATION, REPRESSOR, DNA-BINDING, TRANSCRIPTION, NUCLEAR PROTEIN | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2X6V | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | T-BOX TRANSCRIPTION FACTOR TBX5 | A | 177 | 1442 | 0 |
2 | Protein | T-BOX TRANSCRIPTION FACTOR TBX5 | B | 172 | 1407 | 0 |
3 | Other macromolecule | 5'-D(*TP*CP*TP*CP*AP*CP*AP*CP*CP*TP*TP)-3' | C | 11 | 198 | 0 |
4 | Other macromolecule | 5'-D(*TP*AP*AP*GP*GP*TP*GP*TP*GP*AP*GP)-3' | D | 11 | 230 | 0 |
5 | Ligand | T-BOX TRANSCRIPTION FACTOR TBX5 | A | 1 | 0 | 1 |
6 | Ligand | T-BOX TRANSCRIPTION FACTOR TBX5 | B | 2 | 0 | 25 |
7 | Water | 368 | 0 | 368 | ||
total | 742 | 3277 | 394 |
Unit 1 | GLY53 ILE54 LYS55 VAL56 PHE57 LEU58 HIS59 GLU60 ARG61 GLU62 LEU63 TRP64 LEU65 LYS66 PHE67 HIS68 GLU69 VAL70 GLY71 THR72 GLU73 MET74 ILE75 ILE76 THR77 LYS78 ALA79 GLY80 ARG81 ARG82 MET83 PHE84 PRO85 SER86 TYR87 LYS88 VAL89 LYS90 VAL91 THR92 GLY93 LEU94 ASN95 PRO96 LYS97 THR98 LYS99 TYR100 ILE101 LEU102 LEU103 MET104 ASP105 ILE106 VAL107 PRO108 ALA109 ASP110 ASP111 HIS112 ARG113 TYR114 LYS115 PHE116 ALA117 ASP118 ASN119 LYS120 TRP121 SER122 VAL123 THR124 GLY125 LYS126 ALA127 GLU128 PRO129 ALA130 MET131 PRO132 GLY133 ARG134 LEU135 TYR136 VAL137 HIS138 PRO139 ASP140 SER141 PRO142 ALA143 THR144 GLY145 ALA146 HIS147 TRP148 MET149 ARG150 GLN151 LEU152 VAL153 SER154 PHE155 GLN156 LYS157 LEU158 LYS159 LEU160 THR161 ASN162 ASN163 HIS164 LEU165 ASP166 PRO167 PHE168 GLY169 HIS170 ILE171 ILE172 LEU173 ASN174 SER175 MET176 HIS177 LYS178 TYR179 GLN180 PRO181 ARG182 LEU183 HIS184 ILE185 VAL186 LYS187 ALA188 ASP189 THR199 ALA200 PHE201 CYS202 THR203 HIS204 VAL205 PHE206 PRO207 GLU208 THR209 ALA210 PHE211 ILE212 ALA213 VAL214 THR215 SER216 TYR217 GLN218 ASN219 HIS220 LYS221 ILE222 THR223 GLN224 LEU225 LYS226 ILE227 GLU228 ASN229 ASN230 PRO231 PHE232 ALA233 LYS234 GLY235 PHE236 ARG237 GLY238 |
Unit 2 | GLU52 GLY53 ILE54 LYS55 VAL56 PHE57 LEU58 HIS59 GLU60 ARG61 GLU62 LEU63 TRP64 LEU65 LYS66 PHE67 HIS68 GLU69 VAL70 GLY71 THR72 GLU73 MET74 ILE75 ILE76 THR77 LYS78 ALA79 GLY80 ARG81 ARG82 MET83 PHE84 PRO85 SER86 TYR87 LYS88 VAL89 LYS90 VAL91 THR92 GLY93 LEU94 ASN95 PRO96 LYS97 THR98 LYS99 TYR100 ILE101 LEU102 LEU103 MET104 ASP105 ILE106 VAL107 PRO108 ALA109 ASP110 ASP111 HIS112 ARG113 TYR114 LYS115 PHE116 ALA117 ASP118 ASN119 LYS120 TRP121 SER122 VAL123 THR124 GLY125 LYS126 ALA127 GLU128 PRO129 ALA130 MET131 PRO132 GLY133 ARG134 LEU135 TYR136 VAL137 HIS138 PRO139 ASP140 SER141 PRO142 ALA143 THR144 GLY145 ALA146 HIS147 TRP148 MET149 ARG150 GLN151 LEU152 VAL153 SER154 PHE155 GLN156 LYS157 LEU158 LYS159 LEU160 THR161 ASN162 ASN163 HIS164 LEU165 ASP166 PRO167 PHE168 GLY169 HIS170 ILE171 ILE172 LEU173 ASN174 SER175 MET176 HIS177 LYS178 TYR179 GLN180 PRO181 ARG182 LEU183 HIS184 ILE185 VAL186 LYS187 ALA188 ASP189 THR199 ALA200 PHE201 CYS202 THR203 HIS204 VAL205 PHE206 PRO207 GLU208 THR209 ALA210 PHE211 ILE212 ALA213 VAL214 THR215 SER216 TYR217 GLN218 ASN219 HIS220 LYS221 ILE222 THR223 GLN224 LEU225 LYS226 ILE227 GLU228 ASN229 ASN230 PRO231 PHE232 |
Unit 3 | DT1 DC2 DT3 DC4 DA5 DC6 DA7 DC8 DC9 DT10 DT11 |
Unit 4 | DT12 DA13 DA14 DG15 DG16 DT17 DG18 DT19 DG20 DA21 DG22 |
Unit 5 | MG1239 |
Unit 6 | MG1233 PE41234 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |