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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN FOAMY VIRUS INTEGRASE - CATALYTIC CORE. MANGANESE- BOUND STRUCTURE.
Keywords VIRAL PROTEIN, RETROVIRAL INTEGRASE, DNA-DIRECTED DNA POLYME NUCLEOTIDYLTRANSFERASE, DNA INTEGRATION, ASPARTYL PROTEASE, RECOMBINATION, TRANSFERASE, NUCLEASE, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2X6N     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INTEGRASE  A 188 1503 0
2  Protein   INTEGRASE  B 183 1473 0
3  Protein   INTEGRASE  C 180 1434 0
4  Protein   INTEGRASE  D 178 1426 0
5  Protein   INTEGRASE  E 179 1432 0
6  Protein   INTEGRASE  F 180 1440 0
7  Ligand   INTEGRASE  A 1 0 1
8  Ligand   INTEGRASE  B 1 0 1
9  Ligand   INTEGRASE  C 1 0 1
10  Ligand   INTEGRASE  D 1 0 1
11  Ligand   INTEGRASE  E 1 0 1
12  Ligand   INTEGRASE  F 1 0 1
13 Water     314 0 314
total       1408 8708 320
Proteins
Unit 1 PRO118 GLN119 LYS120 PRO121 PHE122 ASP123 LYS124 PHE125 PHE126 MET127 ASP128 TYR129 ILE130 GLY131 PRO132 LEU133 PRO134 PRO135 SER136 GLN137 GLY138 TYR139 LEU140 TYR141 VAL142 LEU143 VAL144 VAL145 VAL146 ASP147 GLY148 MET149 THR150 GLY151 PHE152 THR153 TRP154 LEU155 TYR156 PRO157 THR158 LYS159 ALA160 PRO161 SER162 THR163 SER164 ALA165 THR166 VAL167 LYS168 SER169 LEU170 ASN171 VAL172 LEU173 THR174 SER175 ILE176 ALA177 ILE178 PRO179 ARG180 VAL181 ILE182 HIS183 SER184 ASP185 GLN186 GLY187 ALA188 ALA189 PHE190 THR191 SER192 SER193 THR194 PHE195 ALA196 GLU197 TRP198 ALA199 LYS200 GLU201 ARG202 GLY203 ILE204 HIS205 LEU206 GLU207 PHE208 SER209 THR210 PRO211 TYR212 HIS213 PRO214 GLN215 SER216 GLY217 SER218 LYS219 VAL220 GLU221 ARG222 LYS223 ASN224 SER225 ASP226 MET227 LYS228 ARG229 LEU230 LEU231 THR232 LYS233 LEU234 LEU235 VAL236 GLY237 ARG238 PRO239 THR240 LYS241 TRP242 TYR243 ASP244 LEU245 LEU246 PRO247 VAL248 VAL249 GLN250 LEU251 ALA252 MET253 ASN254 ASN255 THR256 TYR257 SER258 PRO259 VAL260 LEU261 LYS262 TYR263 THR264 PRO265 HIS266 GLN267 LEU268 LEU269 PHE270 GLY271 ILE272 ASP273 SER274 ASN275 THR276 PRO277 PHE278 ALA279 ASN280 GLN281 ASP282 THR283 LEU284 ASP285 LEU286 THR287 ARG288 GLU289 GLU290 GLU291 LEU292 SER293 LEU294 LEU295 GLN296 GLU297 ILE298 ARG299 THR300 SER301 LEU302 TYR303 HIS304 PRO305
Unit 2 GLN119 LYS120 PRO121 PHE122 ASP123 LYS124 PHE125 PHE126 MET127 ASP128 TYR129 ILE130 GLY131 PRO132 LEU133 PRO134 PRO135 SER136 GLN137 GLY138 TYR139 LEU140 TYR141 VAL142 LEU143 VAL144 VAL145 VAL146 ASP147 GLY148 MET149 THR150 GLY151 PHE152 THR153 TRP154 LEU155 TYR156 PRO157 THR158 LYS159 ALA160 PRO161 SER162 THR163 SER164 ALA165 THR166 VAL167 LYS168 SER169 LEU170 ASN171 VAL172 LEU173 THR174 SER175 ILE176 ALA177 ILE178 PRO179 ARG180 VAL181 ILE182 HIS183 SER184 ASP185 GLN186 GLY187 ALA188 ALA189 PHE190 THR191 SER192 SER193 THR194 PHE195 ALA196 GLU197 TRP198 ALA199 LYS200 GLU201 ARG202 GLY203 ILE204 HIS205 LEU206 GLU207 PHE208 SER209 THR210 PRO211 TYR212 HIS213 PRO214 GLN215 LYS219 VAL220 GLU221 ARG222 LYS223 ASN224 SER225 ASP226 MET227 LYS228 ARG229 LEU230 LEU231 THR232 LYS233 LEU234 LEU235 VAL236 GLY237 ARG238 PRO239 THR240 LYS241 TRP242 TYR243 ASP244 LEU245 LEU246 PRO247 VAL248 VAL249 GLN250 LEU251 ALA252 MET253 ASN254 ASN255 THR256 TYR257 SER258 PRO259 VAL260 LEU261 LYS262 TYR263 THR264 PRO265 HIS266 GLN267 LEU268 LEU269 PHE270 GLY271 ILE272 ASP273 SER274 ASN275 THR276 PRO277 PHE278 ALA279 ASN280 GLN281 ASP282 THR283 LEU284 ASP285 LEU286 THR287 ARG288 GLU289 GLU290 GLU291 LEU292 SER293 LEU294 LEU295 GLN296 GLU297 ILE298 ARG299 THR300 SER301 LEU302 TYR303 HIS304
Unit 3 GLN119 LYS120 PRO121 PHE122 ASP123 LYS124 PHE125 PHE126 MET127 ASP128 TYR129 ILE130 GLY131 PRO132 LEU133 PRO134 PRO135 SER136 GLN137 GLY138 TYR139 LEU140 TYR141 VAL142 LEU143 VAL144 VAL145 VAL146 ASP147 GLY148 MET149 THR150 GLY151 PHE152 THR153 TRP154 LEU155 TYR156 PRO157 THR158 LYS159 ALA160 PRO161 SER162 THR163 SER164 ALA165 THR166 VAL167 LYS168 SER169 LEU170 ASN171 VAL172 LEU173 THR174 SER175 ILE176 ALA177 ILE178 PRO179 ARG180 VAL181 ILE182 HIS183 SER184 ASP185 GLN186 GLY187 ALA188 ALA189 PHE190 THR191 SER192 SER193 THR194 PHE195 ALA196 GLU197 TRP198 ALA199 LYS200 GLU201 ARG202 GLY203 ILE204 HIS205 LEU206 GLU207 PHE208 SER209 THR210 PRO211 LYS219 VAL220 GLU221 ARG222 LYS223 ASN224 SER225 ASP226 MET227 LYS228 ARG229 LEU230 LEU231 THR232 LYS233 LEU234 LEU235 VAL236 GLY237 ARG238 PRO239 THR240 LYS241 TRP242 TYR243 ASP244 LEU245 LEU246 PRO247 VAL248 VAL249 GLN250 LEU251 ALA252 MET253 ASN254 ASN255 THR256 TYR257 SER258 PRO259 VAL260 LEU261 LYS262 TYR263 THR264 PRO265 HIS266 GLN267 LEU268 LEU269 PHE270 GLY271 ILE272 ASP273 SER274 ASN275 THR276 PRO277 PHE278 ALA279 ASN280 GLN281 ASP282 THR283 LEU284 ASP285 LEU286 THR287 ARG288 GLU289 GLU290 GLU291 LEU292 SER293 LEU294 LEU295 GLN296 GLU297 ILE298 ARG299 THR300 SER301 LEU302 TYR303 HIS304 PRO305
Unit 4 PRO118 GLN119 LYS120 PRO121 PHE122 ASP123 LYS124 PHE125 PHE126 MET127 ASP128 TYR129 ILE130 GLY131 PRO132 LEU133 PRO134 PRO135 SER136 GLN137 GLY138 TYR139 LEU140 TYR141 VAL142 LEU143 VAL144 VAL145 VAL146 ASP147 GLY148 MET149 THR150 GLY151 PHE152 THR153 TRP154 LEU155 TYR156 PRO157 THR158 LYS159 ALA160 PRO161 SER162 THR163 SER164 ALA165 THR166 VAL167 LYS168 SER169 LEU170 ASN171 VAL172 LEU173 THR174 SER175 ILE176 ALA177 ILE178 PRO179 ARG180 VAL181 ILE182 HIS183 SER184 ASP185 GLN186 GLY187 ALA188 ALA189 PHE190 THR191 SER192 SER193 THR194 PHE195 ALA196 GLU197 TRP198 ALA199 LYS200 GLU201 ARG202 GLY203 ILE204 HIS205 LEU206 GLU207 PHE208 SER209 THR210 VAL220 GLU221 ARG222 LYS223 ASN224 SER225 ASP226 MET227 LYS228 ARG229 LEU230 LEU231 THR232 LYS233 LEU234 LEU235 VAL236 GLY237 ARG238 PRO239 THR240 LYS241 TRP242 TYR243 ASP244 LEU245 LEU246 PRO247 VAL248 VAL249 GLN250 LEU251 ALA252 MET253 ASN254 ASN255 THR256 TYR257 SER258 PRO259 VAL260 LEU261 LYS262 TYR263 THR264 PRO265 HIS266 GLN267 LEU268 LEU269 PHE270 GLY271 ILE272 ASP273 SER274 ASN275 THR276 PRO277 PHE278 ALA279 ASN280 GLN281 ASP282 THR283 LEU284 ASP285 LEU286 THR287 ARG288 GLU289 GLU290 GLU291 LEU292 SER293 LEU294 LEU295 GLN296 GLU297 ILE298 ARG299 THR300 SER301 LEU302 TYR303 HIS304
Unit 5 PRO118 GLN119 LYS120 PRO121 PHE122 ASP123 LYS124 PHE125 PHE126 MET127 ASP128 TYR129 ILE130 GLY131 PRO132 LEU133 PRO134 PRO135 SER136 GLN137 GLY138 TYR139 LEU140 TYR141 VAL142 LEU143 VAL144 VAL145 VAL146 ASP147 GLY148 MET149 THR150 GLY151 PHE152 THR153 TRP154 LEU155 TYR156 PRO157 THR158 LYS159 ALA160 PRO161 SER162 THR163 SER164 ALA165 THR166 VAL167 LYS168 SER169 LEU170 ASN171 VAL172 LEU173 THR174 SER175 ILE176 ALA177 ILE178 PRO179 ARG180 VAL181 ILE182 HIS183 SER184 ASP185 GLN186 GLY187 ALA188 ALA189 PHE190 THR191 SER192 SER193 THR194 PHE195 ALA196 GLU197 TRP198 ALA199 LYS200 GLU201 ARG202 GLY203 ILE204 HIS205 LEU206 GLU207 PHE208 SER209 THR210 PRO211 TYR212 HIS213 PRO214 VAL220 GLU221 ARG222 LYS223 ASN224 SER225 ASP226 MET227 LYS228 ARG229 LEU230 LEU231 THR232 LYS233 LEU234 LEU235 VAL236 GLY237 ARG238 PRO239 THR240 LYS241 TRP242 TYR243 ASP244 LEU245 LEU246 PRO247 VAL248 VAL249 GLN250 LEU251 ALA252 MET253 ASN254 ASN255 THR256 TYR257 SER258 PRO259 VAL260 LEU261 LYS262 TYR263 THR264 PRO265 HIS266 GLN267 LEU268 LEU269 PHE270 GLY271 ILE272 ASP273 SER274 ASN275 THR276 PRO277 PHE278 ALA279 ASN280 GLN281 ASP282 THR283 LEU284 ASP285 LEU286 THR287 ARG288 GLU289 GLU290 GLU291 LEU292 SER293 LEU294 LEU295 GLN296 GLU297 ILE298 ARG299 THR300 SER301
Unit 6 GLN119 LYS120 PRO121 PHE122 ASP123 LYS124 PHE125 PHE126 MET127 ASP128 TYR129 ILE130 GLY131 PRO132 LEU133 PRO134 PRO135 SER136 GLN137 GLY138 TYR139 LEU140 TYR141 VAL142 LEU143 VAL144 VAL145 VAL146 ASP147 GLY148 MET149 THR150 GLY151 PHE152 THR153 TRP154 LEU155 TYR156 PRO157 THR158 LYS159 ALA160 PRO161 SER162 THR163 SER164 ALA165 THR166 VAL167 LYS168 SER169 LEU170 ASN171 VAL172 LEU173 THR174 SER175 ILE176 ALA177 ILE178 PRO179 ARG180 VAL181 ILE182 HIS183 SER184 ASP185 GLN186 GLY187 ALA188 ALA189 PHE190 THR191 SER192 SER193 THR194 PHE195 ALA196 GLU197 TRP198 ALA199 LYS200 GLU201 ARG202 GLY203 ILE204 HIS205 LEU206 GLU207 PHE208 SER209 THR210 PRO211 TYR212 HIS213 LYS219 VAL220 GLU221 ARG222 LYS223 ASN224 SER225 ASP226 MET227 LYS228 ARG229 LEU230 LEU231 THR232 LYS233 LEU234 LEU235 VAL236 GLY237 ARG238 PRO239 THR240 LYS241 TRP242 TYR243 ASP244 LEU245 LEU246 PRO247 VAL248 VAL249 GLN250 LEU251 ALA252 MET253 ASN254 ASN255 THR256 TYR257 SER258 PRO259 VAL260 LEU261 LYS262 TYR263 THR264 PRO265 HIS266 GLN267 LEU268 LEU269 PHE270 GLY271 ILE272 ASP273 SER274 ASN275 THR276 PRO277 PHE278 ALA279 ASN280 GLN281 ASP282 THR283 LEU284 ASP285 LEU286 THR287 ARG288 GLU289 GLU290 GLU291 LEU292 SER293 LEU294 LEU295 GLN296 GLU297 ILE298 ARG299 THR300 SER301 LEU302 TYR303
Ligands
Unit 7 MN1197
Unit 8 MN1196
Unit 9 MN1197
Unit 10 MN1196
Unit 11 MN1193
Unit 12 MN1195
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany