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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MYCOBACTERIUM SMEGMATIS METHIONYL-TRNA IN COMPLEX WITH METHIONINE AND ADENOSINE
Keywords NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, LIGASE, AMINOACYL- SYNTHETASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2X1L     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   METHIONYL-TRNA SYNTHETASE  A 511 4076 0
2  Protein   METHIONYL-TRNA SYNTHETASE  B 474 3773 0
3  Protein   METHIONYL-TRNA SYNTHETASE  C 476 3789 0
4  Protein   METHIONYL-TRNA SYNTHETASE  A 4 0 47
5  Protein   METHIONYL-TRNA SYNTHETASE  B 4 0 47
6  Protein   METHIONYL-TRNA SYNTHETASE  C 4 0 47
7 Water     484 0 484
total       1957 11638 625

Proteins
Unit 1 SER2 GLU3 PRO4 PHE5 TYR6 ILE7 THR8 THR9 ALA10 ILE11 ALA12 TYR13 PRO14 ASN15 GLY16 VAL17 PRO18 HIS19 ILE20 GLY21 HIS22 ALA23 TYR24 GLU25 TYR26 ILE27 ALA28 THR29 ASP30 ALA31 ILE32 ALA33 ARG34 PHE35 LYS36 ARG37 LEU38 ASP39 GLY40 TYR41 ASP42 VAL43 ARG44 TYR45 LEU46 THR47 GLY48 THR49 ASP50 VAL51 HIS52 GLY53 GLN54 LYS55 MET56 ALA57 GLU58 THR59 ALA60 ALA61 LYS62 GLU63 GLY64 ILE65 PRO66 ALA67 ALA68 GLU69 LEU70 ALA71 ARG72 ARG73 ASN74 SER75 ASP76 VAL77 PHE78 GLN79 ARG80 LEU81 GLN82 GLU83 LYS84 LEU85 ASN86 ILE87 SER88 PHE89 ASP90 ARG91 PHE92 ILE93 ARG94 THR95 SER96 ASP97 ALA98 ASP99 HIS100 TYR101 GLU102 ALA103 SER104 LYS105 ALA106 ILE107 TRP108 LYS109 ARG110 MET111 ALA112 ASP113 ALA114 GLY115 ASP116 ILE117 TYR118 LEU119 ASP120 ALA121 TYR122 LYS123 GLY124 TRP125 TYR126 SER127 ILE128 ARG129 ASP130 GLU131 ARG132 PHE133 PHE134 THR135 GLU136 ASN137 GLU138 THR139 THR140 GLU141 GLN142 PRO143 ASP144 GLY145 THR146 ARG147 ILE148 ALA149 THR150 GLU151 THR152 GLY153 ALA154 PRO155 VAL156 THR157 TRP158 THR159 GLU160 GLU161 GLN162 THR163 TYR164 PHE165 PHE166 ARG167 LEU168 SER169 ALA170 TYR171 THR172 ASP173 ARG174 LEU175 LEU176 ALA177 LEU178 TYR179 GLU180 GLU181 HIS182 PRO183 GLU184 PHE185 ILE186 GLY187 PRO188 ASP189 ALA190 ARG191 ARG192 ASN193 GLU194 ILE195 VAL196 SER197 PHE198 VAL199 SER200 GLY201 GLY202 LEU203 LYS204 ASP205 LEU206 SER207 ILE208 SER209 ARG210 THR211 THR212 PHE213 ASP214 TRP215 GLY216 VAL217 PRO218 VAL219 PRO220 ASP221 HIS222 PRO223 ASP224 HIS225 VAL226 MET227 TYR228 VAL229 TRP230 VAL231 ASP232 ALA233 LEU234 THR235 ASN236 TYR237 LEU238 THR239 GLY240 VAL241 GLY242 PHE243 PRO244 ASP245 THR246 GLU247 SER248 GLU249 SER250 PHE251 ARG252 ARG253 TYR254 TRP255 PRO256 ALA257 ASP258 LEU259 HIS260 MET261 ILE262 GLY263 LYS264 ASP265 ILE266 ILE267 ARG268 PHE269 HIS270 THR271 VAL272 TYR273 TRP274 PRO275 ALA276 PHE277 LEU278 MET279 SER280 ALA281 GLY282 LEU283 PRO284 LEU285 PRO286 LYS287 ARG288 ILE289 PHE290 ALA291 HIS292 GLY293 TRP294 LEU295 LEU296 ASN297 ARG298 GLY299 GLU300 LYS301 MET302 SER303 LYS304 SER305 ILE306 GLY307 ASN308 VAL309 VAL310 ASP311 PRO312 VAL313 ASN314 LEU315 VAL316 ASP317 THR318 PHE319 GLY320 LEU321 ASP322 GLN323 VAL324 ARG325 TYR326 PHE327 LEU328 LEU329 ARG330 GLU331 VAL332 PRO333 PHE334 GLY335 GLN336 ASP337 GLY338 SER339 TYR340 ASN341 GLU342 ASP343 ALA344 ILE345 ILE346 GLY347 ARG348 VAL349 ASN350 ALA351 ASP352 LEU353 ALA354 ASN355 GLU356 LEU357 GLY358 ASN359 LEU360 ALA361 GLN362 ARG363 SER364 LEU365 SER366 MET367 VAL368 ALA369 LYS370 ASN371 LEU372 GLY373 ALA374 ALA375 VAL376 PRO377 ASP378 PRO379 GLY380 GLU381 PHE382 THR383 ASP384 GLU385 ASP386 THR387 ALA388 LEU389 LEU390 ALA391 ALA392 ALA393 ASP394 ALA395 LEU396 LEU397 GLU398 ARG399 VAL400 ARG401 GLU402 HIS403 PHE404 ASP405 VAL406 PRO407 ALA408 MET409 HIS410 LEU411 ALA412 LEU413 GLU414 ALA415 ILE416 TRP417 SER418 VAL419 LEU420 GLY421 ALA422 ALA423 ASN424 ARG425 TYR426 PHE427 SER428 ALA429 GLN430 GLU431 PRO432 TRP433 VAL434 LEU435 ARG436 LYS437 SER438 ASP439 ALA440 ALA441 GLU442 ASP443 GLN444 GLN445 ARG446 PHE447 ARG448 THR449 VAL450 LEU451 TYR452 THR453 THR454 LEU455 GLU456 VAL457 VAL458 ARG459 ILE460 ALA461 SER462 LEU463 LEU464 LEU465 GLN466 PRO467 VAL468 MET469 PRO470 GLU471 SER472 THR473 ALA474 LYS475 LEU476 LEU477 ASP478 LEU479 LEU480 GLY481 GLN482 PRO483 THR484 ASP485 GLU486 ARG487 ASP488 PHE489 SER490 ALA491 ILE492 ALA493 ASN494 ARG495 ILE496 LYS497 PRO498 GLY499 THR500 SER501 LEU502 PRO503 ALA504 PRO505 SER506 GLY507 ILE508 PHE509 PRO510 ARG511 TYR512
Unit 2 SER2 GLU3 PRO4 PHE5 TYR6 ILE7 THR8 THR9 ALA10 ILE11 ALA12 TYR13 PRO14 ASN15 GLY16 VAL17 PRO18 HIS19 ILE20 GLY21 HIS22 ALA23 TYR24 GLU25 TYR26 ILE27 ALA28 THR29 ASP30 ALA31 ILE32 ALA33 ARG34 PHE35 LYS36 ARG37 LEU38 ASP39 GLY40 TYR41 ASP42 VAL43 ARG44 TYR45 LEU46 THR47 GLY48 THR49 ASP50 VAL51 HIS52 GLY53 GLN54 LYS55 MET56 ALA57 GLU58 THR59 ALA60 ALA61 LYS62 GLU63 GLY64 ILE65 PRO66 ALA67 ALA68 GLU69 LEU70 ALA71 ARG72 ARG73 ASN74 SER75 ASP76 VAL77 PHE78 GLN79 ARG80 LEU81 GLN82 GLU83 LYS84 LEU85 ASN86 ILE87 SER88 PHE89 ASP90 ARG91 PHE92 ILE93 ARG94 THR95 SER96 ASP97 ALA98 ASP99 HIS100 TYR101 GLU102 ALA103 SER104 LYS105 ALA106 ILE107 TRP108 LYS109 ARG110 MET111 ALA112 ASP113 ALA114 GLY115 ASP116 ILE117 TYR118 LEU119 ASP120 ALA121 TYR122 LYS123 GLU161 GLN162 THR163 TYR164 PHE165 PHE166 ARG167 LEU168 SER169 ALA170 TYR171 THR172 ASP173 ARG174 LEU175 LEU176 ALA177 LEU178 TYR179 GLU180 GLU181 HIS182 PRO183 GLU184 PHE185 ILE186 GLY187 PRO188 ASP189 ALA190 ARG191 ARG192 ASN193 GLU194 ILE195 VAL196 SER197 PHE198 VAL199 SER200 GLY201 GLY202 LEU203 LYS204 ASP205 LEU206 SER207 ILE208 SER209 ARG210 THR211 THR212 PHE213 ASP214 TRP215 GLY216 VAL217 PRO218 VAL219 PRO220 ASP221 HIS222 PRO223 ASP224 HIS225 VAL226 MET227 TYR228 VAL229 TRP230 VAL231 ASP232 ALA233 LEU234 THR235 ASN236 TYR237 LEU238 THR239 GLY240 VAL241 GLY242 PHE243 PRO244 ASP245 THR246 GLU247 SER248 GLU249 SER250 PHE251 ARG252 ARG253 TYR254 TRP255 PRO256 ALA257 ASP258 LEU259 HIS260 MET261 ILE262 GLY263 LYS264 ASP265 ILE266 ILE267 ARG268 PHE269 HIS270 THR271 VAL272 TYR273 TRP274 PRO275 ALA276 PHE277 LEU278 MET279 SER280 ALA281 GLY282 LEU283 PRO284 LEU285 PRO286 LYS287 ARG288 ILE289 PHE290 ALA291 HIS292 GLY293 TRP294 LEU295 LEU296 ASN297 ARG298 GLY299 GLU300 LYS301 MET302 SER303 LYS304 SER305 ILE306 GLY307 ASN308 VAL309 VAL310 ASP311 PRO312 VAL313 ASN314 LEU315 VAL316 ASP317 THR318 PHE319 GLY320 LEU321 ASP322 GLN323 VAL324 ARG325 TYR326 PHE327 LEU328 LEU329 ARG330 GLU331 VAL332 PRO333 PHE334 GLY335 GLN336 ASP337 GLY338 SER339 TYR340 ASN341 GLU342 ASP343 ALA344 ILE345 ILE346 GLY347 ARG348 VAL349 ASN350 ALA351 ASP352 LEU353 ALA354 ASN355 GLU356 LEU357 GLY358 ASN359 LEU360 ALA361 GLN362 ARG363 SER364 LEU365 SER366 MET367 VAL368 ALA369 LYS370 ASN371 LEU372 GLY373 ALA374 ALA375 VAL376 PRO377 ASP378 PRO379 GLY380 GLU381 PHE382 THR383 ASP384 GLU385 ASP386 THR387 ALA388 LEU389 LEU390 ALA391 ALA392 ALA393 ASP394 ALA395 LEU396 LEU397 GLU398 ARG399 VAL400 ARG401 GLU402 HIS403 PHE404 ASP405 VAL406 PRO407 ALA408 MET409 HIS410 LEU411 ALA412 LEU413 GLU414 ALA415 ILE416 TRP417 SER418 VAL419 LEU420 GLY421 ALA422 ALA423 ASN424 ARG425 TYR426 PHE427 SER428 ALA429 GLN430 GLU431 PRO432 TRP433 VAL434 LEU435 ARG436 LYS437 SER438 ASP439 ALA440 ALA441 GLU442 ASP443 GLN444 GLN445 ARG446 PHE447 ARG448 THR449 VAL450 LEU451 TYR452 THR453 THR454 LEU455 GLU456 VAL457 VAL458 ARG459 ILE460 ALA461 SER462 LEU463 LEU464 LEU465 GLN466 PRO467 VAL468 MET469 PRO470 GLU471 SER472 THR473 ALA474 LYS475 LEU476 LEU477 ASP478 LEU479 LEU480 GLY481 GLN482 PRO483 THR484 ASP485 GLU486 ARG487 ASP488 PHE489 SER490 ALA491 ILE492 ALA493 ASN494 ARG495 ILE496 LYS497 PRO498 GLY499 THR500 SER501 LEU502 PRO503 ALA504 PRO505 SER506 GLY507 ILE508 PHE509 PRO510 ARG511 TYR512
Unit 3 SER2 GLU3 PRO4 PHE5 TYR6 ILE7 THR8 THR9 ALA10 ILE11 ALA12 TYR13 PRO14 ASN15 GLY16 VAL17 PRO18 HIS19 ILE20 GLY21 HIS22 ALA23 TYR24 GLU25 TYR26 ILE27 ALA28 THR29 ASP30 ALA31 ILE32 ALA33 ARG34 PHE35 LYS36 ARG37 LEU38 ASP39 GLY40 TYR41 ASP42 VAL43 ARG44 TYR45 LEU46 THR47 GLY48 THR49 ASP50 VAL51 HIS52 GLY53 GLN54 LYS55 MET56 ALA57 GLU58 THR59 ALA60 ALA61 LYS62 GLU63 GLY64 ILE65 PRO66 ALA67 ALA68 GLU69 LEU70 ALA71 ARG72 ARG73 ASN74 SER75 ASP76 VAL77 PHE78 GLN79 ARG80 LEU81 GLN82 GLU83 LYS84 LEU85 ASN86 ILE87 SER88 PHE89 ASP90 ARG91 PHE92 ILE93 ARG94 THR95 SER96 ASP97 ALA98 ASP99 HIS100 TYR101 GLU102 ALA103 SER104 LYS105 ALA106 ILE107 TRP108 LYS109 ARG110 MET111 ALA112 ASP113 ALA114 GLY115 ASP116 ILE117 TYR118 LEU119 ASP120 ALA121 TYR122 THR159 GLU160 GLU161 GLN162 THR163 TYR164 PHE165 PHE166 ARG167 LEU168 SER169 ALA170 TYR171 THR172 ASP173 ARG174 LEU175 LEU176 ALA177 LEU178 TYR179 GLU180 GLU181 HIS182 PRO183 GLU184 PHE185 ILE186 GLY187 PRO188 ASP189 ALA190 ARG191 ARG192 ASN193 GLU194 ILE195 VAL196 SER197 PHE198 VAL199 SER200 GLY201 GLY202 LEU203 LYS204 ASP205 LEU206 SER207 ILE208 SER209 ARG210 THR211 THR212 PHE213 ASP214 TRP215 GLY216 VAL217 PRO218 VAL219 PRO220 ASP221 HIS222 PRO223 ASP224 HIS225 VAL226 MET227 TYR228 VAL229 TRP230 VAL231 ASP232 ALA233 LEU234 THR235 ASN236 TYR237 LEU238 THR239 GLY240 VAL241 GLY242 PHE243 PRO244 ASP245 THR246 GLU247 SER248 GLU249 SER250 PHE251 ARG252 ARG253 TYR254 TRP255 PRO256 ALA257 ASP258 LEU259 HIS260 MET261 ILE262 GLY263 LYS264 ASP265 ILE266 ILE267 ARG268 PHE269 HIS270 THR271 VAL272 TYR273 TRP274 PRO275 ALA276 PHE277 LEU278 MET279 SER280 ALA281 GLY282 LEU283 PRO284 LEU285 PRO286 LYS287 ARG288 ILE289 PHE290 ALA291 HIS292 GLY293 TRP294 LEU295 LEU296 ASN297 ARG298 GLY299 GLU300 LYS301 MET302 SER303 LYS304 SER305 ILE306 GLY307 ASN308 VAL309 VAL310 ASP311 PRO312 VAL313 ASN314 LEU315 VAL316 ASP317 THR318 PHE319 GLY320 LEU321 ASP322 GLN323 VAL324 ARG325 TYR326 PHE327 LEU328 LEU329 ARG330 GLU331 VAL332 PRO333 PHE334 GLY335 GLN336 ASP337 GLY338 SER339 TYR340 ASN341 GLU342 ASP343 ALA344 ILE345 ILE346 GLY347 ARG348 VAL349 ASN350 ALA351 ASP352 LEU353 ALA354 ASN355 GLU356 LEU357 GLY358 ASN359 LEU360 ALA361 GLN362 ARG363 SER364 LEU365 SER366 MET367 VAL368 ALA369 LYS370 ASN371 LEU372 GLY373 ALA374 ALA375 VAL376 PRO377 ASP378 PRO379 GLY380 GLU381 PHE382 THR383 ASP384 GLU385 ASP386 THR387 ALA388 LEU389 LEU390 ALA391 ALA392 ALA393 ASP394 ALA395 LEU396 LEU397 GLU398 ARG399 VAL400 ARG401 GLU402 HIS403 PHE404 ASP405 VAL406 PRO407 ALA408 MET409 HIS410 LEU411 ALA412 LEU413 GLU414 ALA415 ILE416 TRP417 SER418 VAL419 LEU420 GLY421 ALA422 ALA423 ASN424 ARG425 TYR426 PHE427 SER428 ALA429 GLN430 GLU431 PRO432 TRP433 VAL434 LEU435 ARG436 LYS437 SER438 ASP439 ALA440 ALA441 GLU442 ASP443 GLN444 GLN445 ARG446 PHE447 ARG448 THR449 VAL450 LEU451 TYR452 THR453 THR454 LEU455 GLU456 VAL457 VAL458 ARG459 ILE460 ALA461 SER462 LEU463 LEU464 LEU465 GLN466 PRO467 VAL468 MET469 PRO470 GLU471 SER472 THR473 ALA474 LYS475 LEU476 LEU477 ASP478 LEU479 LEU480 GLY481 GLN482 PRO483 THR484 ASP485 GLU486 ARG487 ASP488 PHE489 SER490 ALA491 ILE492 ALA493 ASN494 ARG495 ILE496 LYS497 PRO498 GLY499 THR500 SER501 LEU502 PRO503 ALA504 PRO505 SER506 GLY507 ILE508 PHE509 PRO510 ARG511 TYR512 GLN513
Unit 4 MET600 ADN601 CXS602 2HP603
Unit 5 MET600 ADN601 CXS602 2HP603
Unit 6 MET600 ADN601 CXS602 2HP603

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany