Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYO-EM STRUCTURE OF THE ACTIVE YEAST SSH1 COMPLEX BOUND TO 80S RIBOSOME
Keywords RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRANSMEMBRANE, PHOSPHO SIGNAL SEQUENCE, MEMBRANE, RIBOSOME, TRANSPORT, RNA-BINDING BINDING, TRANSLOCATION, PROTEIN CONDUCTING CHANNEL, PROTEIN TUNNEL, ENDOPLASMIC RETICULUM, COTRANSLATIONAL PROTEIN TRANSLOCATION, ISOPEPTIDE BOND, PROTEIN TRANSPORT
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2WW9     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SEC SIXTY-ONE PROTEIN HOMOLOG  A 490 3770 0
2  Protein   PROTEIN TRANSPORT PROTEIN SSS1PROTEIN TRANSPORT PROTEIN SEB225S RRNA  B 60 472 0
3  Protein   PROTEIN TRANSPORT PROTEIN SSS1PROTEIN TRANSPORT PROTEIN SEB225S RRNA  C 21 162 0
4  RNA    D 63 1347 0
5  RNA    E 34 740 0
6  RNA    F 25 536 0
7  RNA    G 18 379 0
8  Protein   60S RIBOSOMAL PROTEIN L4-B  H 269 2039 0
9  Protein   60S RIBOSOMAL PROTEIN L17-A  I 153 1212 0
10  Protein   60S RIBOSOMAL PROTEIN L19  J 53 410 0
11  Protein   60S RIBOSOMAL PROTEIN L25  K 83 663 0
12  Protein   60S RIBOSOMAL PROTEIN L26-A  L 127 1002 0
13  Protein   60S RIBOSOMAL PROTEIN L31-A  M 84 706 0
14  Protein   60S RIBOSOMAL PROTEIN L35  N 69 547 0
15  Protein   60S RIBOSOMAL PROTEIN L39  O 37 316 0
total       1586 14301 0
Proteins
Unit 1 MET1 SER2 GLY3 PHE4 ARG5 LEU6 ILE7 ASP8 ILE9 VAL10 LYS11 PRO12 ILE13 LEU14 PRO15 ILE16 LEU17 PRO18 GLU19 VAL20 GLU21 LEU22 PRO23 PHE24 GLU25 LYS26 LEU27 PRO28 PHE29 ASP30 ASP31 LYS32 ILE33 VAL34 TYR35 THR36 ILE37 PHE38 ALA39 GLY40 LEU41 ILE42 TYR43 LEU44 PHE45 ALA46 GLN47 PHE48 PRO49 LEU50 VAL51 GLY52 LEU53 PRO54 LYS55 ALA56 THR57 THR58 PRO59 ASN60 VAL61 ASN62 ASP63 PRO64 ILE65 TYR66 PHE67 LEU68 ARG69 GLY70 VAL71 PHE72 GLY73 CYS74 GLU75 PRO76 ARG77 THR78 LEU79 LEU80 GLU81 PHE82 GLY83 LEU84 PHE85 PRO86 ASN87 ILE88 SER89 SER90 GLY91 LEU92 ILE93 LEU94 GLN95 LEU96 LEU97 ALA98 GLY99 LEU100 LYS101 VAL102 ILE103 LYS104 VAL105 ASN106 PHE107 LYS108 ILE109 GLN110 SER111 ASP112 ARG113 GLU114 LEU115 PHE116 GLN117 SER118 LEU119 THR120 LYS121 VAL122 PHE123 ALA124 ILE125 VAL126 GLN127 TYR128 VAL129 ILE130 LEU131 THR132 ASN133 ILE134 PHE135 ILE136 PHE137 ALA138 GLY139 TYR140 PHE141 GLY142 ASP143 ASP144 LEU145 SER146 VAL147 VAL148 GLN149 ILE150 GLY151 LEU152 ILE153 ASN154 PHE155 GLN156 LEU157 VAL158 GLY159 ALA160 GLY161 ILE162 PHE163 THR164 THR165 LEU166 LEU167 ALA168 GLU169 VAL170 ILE171 ASP172 LYS173 GLY174 PHE175 GLY176 PHE177 SER178 SER179 GLY180 ALA181 MET182 ILE183 ILE184 ASN185 THR186 VAL187 VAL188 ILE189 ALA190 THR191 ASN192 LEU193 VAL194 ALA195 ASP196 THR197 PHE198 GLY199 VAL200 SER201 GLN202 ILE203 LYS204 VAL205 GLY206 GLU207 ASP208 ASP209 GLN210 THR211 GLU212 ALA213 GLN214 GLY215 ALA216 LEU217 ILE218 ASN219 LEU220 ILE221 GLN222 GLY223 LEU224 ARG225 SER226 LYS227 HIS228 LYS229 THR230 PHE231 ILE232 GLY233 GLY234 ILE235 ILE236 SER237 ALA238 PHE239 ASN240 ARG241 ASP242 TYR243 LEU244 PRO245 ASN246 LEU247 THR248 THR249 THR250 ILE251 ILE252 VAL253 LEU254 ALA255 ILE256 ALA257 ILE258 ILE259 VAL260 CYS261 TYR262 LEU263 GLN264 SER265 VAL266 ARG267 VAL268 GLU269 LEU270 PRO271 ILE272 ARG273 SER274 THR275 ARG276 ALA277 ARG278 GLY279 THR280 ASN281 ASN282 VAL283 TYR284 PRO285 ILE286 LYS287 LEU288 LEU289 TYR290 THR291 GLY292 CYS293 LEU294 SER295 VAL296 LEU297 PHE298 SER299 TYR300 THR301 ILE302 LEU303 PHE304 TYR305 ILE306 HIS307 ILE308 PHE309 ALA310 PHE311 VAL312 LEU313 ILE314 GLN315 LEU316 VAL317 ALA318 LYS319 ASN320 GLU321 PRO322 THR323 HIS324 ILE325 ILE326 CYS327 LYS328 ILE329 MET330 GLY331 HIS332 TYR333 GLU334 ASN335 ALA336 ASN337 ASN338 LEU339 LEU340 ALA341 VAL342 PRO343 THR344 PHE345 PRO346 LEU347 SER348 LEU349 LEU350 ALA351 PRO352 PRO353 THR354 SER355 PHE356 PHE357 LYS358 GLY359 VAL360 THR361 GLN362 GLN363 PRO364 LEU365 THR366 PHE367 ILE368 THR369 TYR370 SER371 ALA372 PHE373 ILE374 LEU375 VAL376 THR377 GLY378 ILE379 TRP380 PHE381 ALA382 ASP383 LYS384 TRP385 GLN386 ALA387 ILE388 SER389 GLY390 SER391 SER392 ALA393 ARG394 ASP395 VAL396 ALA397 LEU398 GLU399 PHE400 LYS401 ASP402 GLN403 GLY404 ILE405 THR406 LEU407 MET408 GLY409 ARG410 ARG411 GLU412 GLN413 ASN414 VAL415 ALA416 LYS417 GLU418 LEU419 ASN420 LYS421 VAL422 ILE423 PRO424 ILE425 ALA426 ALA427 VAL428 THR429 GLY430 ALA431 SER432 VAL433 LEU434 SER435 LEU436 ILE437 THR438 VAL439 ILE440 GLY441 GLU442 SER443 LEU444 GLY445 LEU446 LYS447 GLY448 LYS449 ALA450 ALA451 GLY452 ILE453 VAL454 VAL455 GLY456 ILE457 ALA458 GLY459 GLY460 PHE461 SER462 LEU463 LEU464 GLU465 VAL466 ILE467 THR468 ILE469 GLU470 TYR471 GLN472 GLN473 SER474 GLY475 GLY476 GLN477 SER478 ALA479 LEU480 ASN481 GLN482 VAL483 LEU484 GLY485 VAL486 PRO487 GLY488 ALA489 MET490
Unit 2 LEU21 VAL22 GLU23 ALA24 PRO25 VAL26 GLU27 PHE28 VAL29 ARG30 GLU31 GLY32 THR33 GLN34 PHE35 LEU36 ALA37 LYS38 CYS39 LYS40 LYS41 PRO42 ASP43 LEU44 LYS45 GLU46 TYR47 THR48 LYS49 ILE50 VAL51 LYS52 ALA53 VAL54 GLY55 ILE56 GLY57 PHE58 ILE59 ALA60 VAL61 GLY62 ILE63 ILE64 GLY65 TYR66 ALA67 ILE68 LYS69 LEU70 ILE71 HIS72 ILE73 PRO74 ILE75 ARG76 TYR77 VAL78 ILE79 VAL80
Unit 3 ARG58 VAL59 ASP60 SER61 LEU62 VAL63 VAL64 LEU65 PHE66 LEU67 SER68 VAL69 GLY70 PHE71 ILE72 PHE73 SER74 VAL75 ILE76 ALA77 LEU78
Unit 8 MET1 SER2 ARG3 PRO4 GLN5 VAL6 THR7 VAL8 HIS9 SER10 LEU11 THR12 GLY13 GLU14 ALA15 THR16 ALA17 ASN18 ALA19 LEU20 PRO21 LEU22 PRO23 ALA24 VAL25 PHE26 SER27 ALA28 PRO29 ILE30 ARG31 PRO32 ASP33 ILE34 VAL35 HIS36 THR37 VAL38 PHE39 THR40 SER41 VAL42 ASN43 LYS44 ASN45 LYS46 ARG47 GLN48 ALA49 TYR50 ALA51 VAL52 SER53 GLU54 LYS55 ALA56 GLY57 HIS58 GLN59 THR60 SER61 ALA62 GLU63 SER64 TRP65 GLY66 THR67 GLY68 ARG69 ALA70 VAL71 ALA72 ARG73 ILE74 PRO75 ARG76 VAL77 GLY78 GLY79 GLY80 GLY81 THR82 GLY83 ARG84 SER85 GLY86 GLN87 GLY88 ALA89 PHE90 GLY91 ASN92 MET93 CYS94 ARG95 GLY96 GLY97 ARG98 MET99 PHE100 ALA101 PRO102 THR103 LYS104 THR105 TRP106 ARG107 LYS108 TRP109 ASN110 VAL111 LYS112 VAL113 ASN114 HIS115 ASN116 GLU117 LYS118 ARG119 TYR120 ALA121 THR122 ALA123 SER124 ALA125 ILE126 ALA127 ALA128 THR129 ALA130 VAL131 ALA132 SER133 LEU134 VAL135 LEU136 ALA137 ARG138 GLY139 HIS140 ARG141 VAL142 GLU143 LYS144 ILE145 PRO146 GLU147 ILE148 PRO149 LEU150 VAL151 VAL152 SER153 THR154 ASP155 LEU156 GLU157 SER158 ILE159 GLN160 LYS161 THR162 LYS163 GLU164 ALA165 VAL166 ALA167 ALA168 LEU169 LYS170 ALA171 VAL172 GLY173 ALA174 HIS175 SER176 ASP177 LEU178 LEU179 LYS180 VAL181 LEU182 LYS183 SER184 LYS185 LYS186 LEU187 ARG188 ALA189 GLY190 LYS191 GLY192 LYS193 TYR194 ARG195 ASN196 ARG197 ARG198 TRP199 THR200 GLN201 ARG202 ARG203 GLY204 PRO205 LEU206 VAL207 VAL208 TYR209 ALA210 GLU211 ASP212 ASN213 GLY214 ILE215 VAL216 LYS217 ALA218 LEU219 ARG220 ASN221 VAL222 PRO223 GLY224 VAL225 GLU226 THR227 ALA228 ASN229 VAL230 ALA231 SER232 LEU233 ASN234 LEU235 LEU236 GLN237 LEU238 ALA239 PRO240 GLY241 ALA242 HIS243 LEU244 GLY245 ARG246 PHE247 VAL248 ILE249 TRP250 THR251 GLU252 ALA253 ALA254 PHE255 THR256 LYS257 LEU258 ASP259 GLN260 VAL261 TRP262 GLY263 SER264 GLU265 THR266 VAL267 ALA268 SER269
Unit 9 MET1 ALA2 ARG3 TYR4 GLY5 ALA6 THR7 SER8 THR9 ASN10 PRO11 ALA12 LYS13 SER14 ALA15 SER16 ALA17 ARG18 GLY19 SER20 TYR21 LEU22 ARG23 VAL24 SER25 PHE26 LYS27 ASN28 THR29 ARG30 GLU31 THR32 ALA33 GLN34 ALA35 ILE36 ASN37 GLY38 TRP39 GLU40 LEU41 THR42 LYS43 ALA44 GLN45 LYS46 TYR47 LEU48 GLU49 GLN50 VAL51 LEU52 ASP53 HIS54 GLN55 ARG56 ALA57 ILE58 PRO59 PHE60 ARG61 ARG62 PHE63 ASN64 SER65 SER66 ILE67 GLY68 ARG69 THR70 ALA71 GLN72 GLY73 LYS74 GLU75 PHE76 GLY77 VAL78 THR79 LYS80 ALA81 ARG82 TRP83 PRO84 ALA85 LYS86 SER87 VAL88 LYS89 PHE90 VAL91 GLN92 GLY93 LEU94 LEU95 GLN96 ASN97 ALA98 ALA99 ALA100 ASN101 ALA102 GLU103 ALA104 LYS105 GLY106 LEU107 ASP108 ALA109 THR110 LYS111 LEU112 TYR113 VAL114 SER115 HIS116 ILE117 GLN118 VAL119 ASN120 GLN121 ALA122 PRO123 LYS124 GLN125 ARG126 ARG127 ARG128 THR129 TYR130 ARG131 ALA132 HIS133 GLY134 ARG135 ILE136 ASN137 LYS138 TYR139 GLU140 SER141 SER142 PRO143 SER144 HIS145 ILE146 GLU147 LEU148 VAL149 VAL150 THR151 GLU152 LYS153
Unit 10 MET1 ALA2 ASN3 LEU4 ARG5 THR6 GLN7 LYS8 ARG9 LEU10 ALA11 ALA12 SER13 VAL14 VAL15 GLY16 VAL17 GLY18 LYS19 ARG20 LYS21 VAL22 TRP23 LEU24 ASP25 PRO26 ASN27 GLU28 THR29 SER30 GLU31 ILE32 ALA33 GLN34 ALA35 ASN36 SER37 ARG38 ASN39 ALA40 ILE41 ARG42 LYS43 LEU44 VAL45 LYS46 ASN47 GLY48 THR49 ILE50 VAL51 LYS52 LYS53
Unit 11 LEU57 ASP58 SER59 TYR60 LYS61 VAL62 ILE63 GLU64 GLN65 PRO66 ILE67 THR68 SER69 GLU70 THR71 ALA72 MET73 LYS74 LYS75 VAL76 GLU77 ASP78 GLY79 ASN80 ILE81 LEU82 VAL83 PHE84 GLN85 VAL86 SER87 MET88 LYS89 ALA90 ASN91 LYS92 TYR93 GLN94 ILE95 LYS96 LYS97 ALA98 VAL99 LYS100 GLU101 LEU102 TYR103 GLU104 VAL105 ASP106 VAL107 LEU108 LYS109 VAL110 ASN111 THR112 LEU113 VAL114 ARG115 PRO116 ASN117 GLY118 THR119 LYS120 LYS121 ALA122 TYR123 VAL124 ARG125 LEU126 THR127 ALA128 ASP129 TYR130 ASP131 ALA132 LEU133 ASP134 ILE135 ALA136 ASN137 ARG138 ILE139
Unit 12 MET1 ALA2 LYS3 GLN4 SER5 LEU6 ASP7 VAL8 SER9 SER10 ASP11 ARG12 ARG13 LYS14 ALA15 ARG16 LYS17 ALA18 TYR19 PHE20 THR21 ALA22 PRO23 SER24 SER25 GLN26 ARG27 ARG28 VAL29 LEU30 LEU31 SER32 ALA33 PRO34 LEU35 SER36 LYS37 GLU38 LEU39 ARG40 ALA41 GLN42 TYR43 GLY44 ILE45 LYS46 ALA47 LEU48 PRO49 ILE50 ARG51 ARG52 ASP53 ASP54 GLU55 VAL56 LEU57 VAL58 VAL59 ARG60 GLY61 SER62 LYS63 LYS64 GLY65 GLN66 GLU67 GLY68 LYS69 ILE70 SER71 SER72 VAL73 TYR74 ARG75 LEU76 LYS77 PHE78 ALA79 VAL80 GLN81 VAL82 ASP83 LYS84 VAL85 THR86 LYS87 GLU88 LYS89 VAL90 ASN91 GLY92 ALA93 SER94 VAL95 PRO96 ILE97 ASN98 LEU99 HIS100 PRO101 SER102 LYS103 LEU104 VAL105 ILE106 THR107 LYS108 LEU109 HIS110 LEU111 ASP112 LYS113 ASP114 ARG115 LYS116 ALA117 LEU118 ILE119 GLN120 ARG121 LYS122 GLY123 GLY124 LYS125 LEU126 GLU127
Unit 13 THR9 ARG10 GLU11 TYR12 THR13 ILE14 ASN15 LEU16 HIS17 LYS18 ARG19 LEU20 HIS21 GLY22 VAL23 SER24 PHE25 LYS26 LYS27 ARG28 ALA29 PRO30 ARG31 ALA32 VAL33 LYS34 GLU35 ILE36 LYS37 LYS38 PHE39 ALA40 LYS41 LEU42 HIS43 MET44 GLY45 THR46 ASP47 ASP48 VAL49 ARG50 LEU51 ALA52 PRO53 GLU54 LEU55 ASN56 GLN57 ALA58 ILE59 TRP60 LYS61 ARG62 GLY63 VAL64 LYS65 GLY66 VAL67 GLU68 TYR69 ARG70 LEU71 ARG72 LEU73 ARG74 ILE75 SER76 ARG77 LYS78 ARG79 ASN80 GLU81 GLU82 GLU83 ASP84 ALA85 LYS86 ASN87 PRO88 LEU89 PHE90 SER91 TYR92
Unit 14 MET1 ALA2 GLY3 VAL4 LYS5 ALA6 TYR7 GLU8 LEU9 ARG10 THR11 LYS12 SER13 LYS14 GLU15 GLN16 LEU17 ALA18 SER19 GLN20 LEU21 VAL22 ASP23 LEU24 LYS25 LYS26 GLU27 LEU28 ALA29 GLU30 LEU31 LYS32 VAL33 GLN34 LYS35 LEU36 SER37 ARG38 PRO39 SER40 LEU41 PRO42 LYS43 ILE44 LYS45 THR46 VAL47 ARG48 LYS49 SER50 ILE51 ALA52 CYS53 VAL54 LEU55 THR56 VAL57 ILE58 ASN59 GLU60 GLN61 GLN62 ARG63 GLU64 ALA65 VAL66 ARG67 GLN68 LEU69
Unit 15 MET1 ALA2 ALA3 GLN4 LYS5 SER6 PHE7 ARG8 ILE9 LYS10 GLN11 LYS12 MET13 ALA14 LYS15 ALA16 LYS17 LYS18 GLN19 ASN20 ARG21 PRO22 LEU23 PRO24 GLN25 TRP26 ILE27 ARG28 LEU29 ARG30 THR31 ASN32 ASN33 THR34 ILE35 ARG36 TYR37
Nucleic acids
Unit 4 A41 G42 A43 A44 C45 G46 C47 A48 G49 C50 G51 A52 A53 A54 U55 G56 C57 G58 A59 U60 A61 C62 G63 U64 A65 A66 U67 G68 U69 G70 A71 A72 U73 U74 G75 C76 A77 G78 A79 A80 U81 U82 C83 C84 G85 U86 G87 A88 A89 U90 C91 A92 U93 C94 G95 A96 A97 U98 C99 U100 U101 U102 G103
Unit 5 U528 G529 A530 A531 A532 A533 G534 A535 A536 C537 U538 U539 U540 G541 A542 A543 A544 A545 G546 A547 G548 A549 G550 U551 G552 A553 A554 A555 A556 A557 G558 U559 A560 C561
Unit 6 C1654 C1655 A1656 C1657 G1658 U1659 C1660 A1661 A1662 C1663 A1664 G1665 C1666 A1667 G1668 U1669 U1670 G1671 G1672 A1673 C1674 G1675 U1676 G1677 G1678
Unit 7 G912 C913 C914 A915 G916 C917 A918 C919 C920 U921 U922 U923 G924 C925 U926 G927 G928 C929
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany